Wall clock time and date at job start Tue Mar 31 2020 17:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.21391 * 2 1 4 4 C 1.54436 * 110.24216 * 237.99420 * 2 1 3 5 5 C 1.54579 * 101.66514 * 215.49189 * 4 2 1 6 6 H 1.08997 * 110.47945 * 143.64145 * 5 4 2 7 7 N 1.46501 * 110.48186 * 266.26835 * 5 4 2 8 8 C 1.34774 * 119.99960 * 201.25736 * 7 5 4 9 9 O 1.21589 * 120.00222 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99862 * 180.02562 * 8 7 5 11 11 C 1.46504 * 120.00265 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46503 * 35.00074 * 11 10 8 13 13 C 1.50702 * 109.47424 * 154.99795 * 11 10 8 14 14 H 1.08008 * 119.99591 * 0.02562 * 13 11 10 15 15 C 1.37868 * 120.00045 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00102 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99985 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47384 * 59.99305 * 17 15 13 19 19 H 1.48497 * 109.47168 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46904 * 299.99421 * 17 15 13 21 21 C 1.52994 * 109.47289 * 275.00395 * 11 10 8 22 22 F 1.39900 * 109.47353 * 59.99779 * 21 11 10 23 23 F 1.39896 * 109.47211 * 179.97438 * 21 11 10 24 24 F 1.39901 * 109.47049 * 299.99532 * 21 11 10 25 25 C 1.51469 * 104.22105 * 24.95565 * 5 4 2 26 26 N 1.31168 * 141.93737 * 163.42113 * 25 5 4 27 27 C 1.33165 * 109.83471 * 180.25639 * 26 25 5 28 28 N 1.30651 * 108.95120 * 359.95749 * 27 26 25 29 29 N 1.34115 * 110.05342 * 343.55007 * 25 5 4 30 30 H 1.09002 * 109.47153 * 299.52611 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.52802 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.52784 * 1 2 3 33 33 H 1.08997 * 110.98694 * 333.58867 * 4 2 1 34 34 H 1.08997 * 110.98957 * 97.39959 * 4 2 1 35 35 H 0.97001 * 120.00029 * 21.26163 * 7 5 4 36 36 H 0.97001 * 120.00127 * 0.02562 * 10 8 7 37 37 H 0.97002 * 120.00165 * 180.02562 * 16 15 13 38 38 H 1.08005 * 125.52688 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0643 -0.7680 -1.2287 5 6 3.3289 -1.4427 -0.6499 6 1 3.4628 -2.4350 -1.0806 7 7 4.5107 -0.6124 -0.8951 8 6 5.7394 -1.1659 -0.8736 9 8 5.8670 -2.3543 -0.6503 10 7 6.8267 -0.4020 -1.0987 11 6 8.1623 -1.0034 -1.0748 12 1 8.1120 -2.0158 -1.4758 13 6 9.1009 -0.1763 -1.9151 14 1 8.7388 0.7091 -2.4164 15 6 10.4217 -0.5500 -2.0438 16 7 10.8628 -1.6279 -1.4329 17 14 11.5853 0.4757 -3.0847 18 1 11.6541 1.8545 -2.5377 19 1 12.9391 -0.1341 -3.0606 20 1 11.0878 0.5222 -4.4832 21 6 8.6747 -1.0505 0.3660 22 9 7.8035 -1.8184 1.1460 23 9 9.9499 -1.6254 0.3889 24 9 8.7392 0.2487 0.8807 25 6 3.0504 -1.5428 0.8356 26 7 3.4547 -2.1545 1.9232 27 6 2.7237 -1.7577 2.9631 28 7 1.8417 -0.8852 2.5534 29 7 2.0383 -0.7288 1.1696 30 1 -0.3633 0.5065 0.8942 31 1 -0.3633 -1.0277 -0.0085 32 1 -0.3634 0.5212 -0.8857 33 1 1.3442 -1.5131 -1.5668 34 1 2.3224 -0.0823 -2.0358 35 1 4.4090 0.3357 -1.0729 36 1 6.7249 0.5463 -1.2758 37 1 11.7922 -1.8905 -1.5231 38 1 2.8410 -2.1011 3.9803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932893923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:56 Heat of formation + Delta-G solvation = -50.056240 kcal Electronic energy + Delta-G solvation = -29937.693921 eV Core-core repulsion = 25210.983981 eV Total energy + Delta-G solvation = -4726.709941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.25494 -45.90122 -45.53406 -42.53288 -39.49978 -37.65483 -34.82824 -34.01207 -32.59397 -31.31904 -30.71849 -29.30992 -27.85180 -24.99841 -24.50430 -22.86139 -21.90930 -20.75594 -20.55860 -20.26878 -18.53002 -17.33730 -16.78845 -16.73367 -16.53829 -15.99199 -15.76360 -15.36892 -15.16137 -14.87683 -14.76530 -14.34001 -14.05682 -13.82757 -13.28029 -13.08530 -12.81400 -12.81088 -12.56849 -12.46464 -12.29444 -12.21893 -12.04632 -11.91652 -11.75330 -11.63008 -11.44037 -11.15296 -10.85960 -10.78445 -10.39307 -9.81304 -9.77065 -9.71049 -9.65246 -9.46163 -9.15545 -8.70770 -8.21581 -6.21723 -4.46200 1.53084 1.97293 2.77931 3.19812 3.23217 3.25933 3.28877 3.40442 3.69746 4.03450 4.08961 4.19032 4.32999 4.57941 4.62289 4.74636 4.85555 4.95901 4.96177 5.08192 5.19292 5.29944 5.37327 5.50666 5.64276 5.89680 5.94466 6.26815 6.37095 6.44133 6.47944 6.60030 6.79961 7.16524 7.31937 7.59582 7.65512 8.20742 8.48201 8.58669 9.11040 9.23359 10.69702 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.003532 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.252224 B = 7925.509792 C = 8666.787830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.101 0.899 4 C -0.133 4.133 5 C 0.240 3.760 6 H 0.127 0.873 7 N -0.741 5.741 8 C 0.699 3.301 9 O -0.563 6.563 10 N -0.723 5.723 11 C 0.264 3.736 12 H 0.086 0.914 13 C -0.553 4.553 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.838 5.838 17 Si 0.915 3.085 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.415 3.585 22 F -0.212 7.212 23 F -0.138 7.138 24 F -0.212 7.212 25 C 0.249 3.751 26 N -0.506 5.506 27 C 0.198 3.802 28 N -0.303 5.303 29 N -0.397 5.397 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.396 0.604 36 H 0.394 0.606 37 H 0.269 0.731 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 4.979 -1.414 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.119 0.881 4 C -0.172 4.172 5 C 0.130 3.870 6 H 0.144 0.856 7 N -0.399 5.399 8 C 0.399 3.601 9 O -0.438 6.438 10 N -0.376 5.376 11 C 0.157 3.843 12 H 0.104 0.896 13 C -0.590 4.590 14 H 0.094 0.906 15 C -0.144 4.144 16 N -0.471 5.471 17 Si 0.742 3.258 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.358 3.642 22 F -0.194 7.194 23 F -0.119 7.119 24 F -0.194 7.194 25 C -0.030 4.030 26 N -0.232 5.232 27 C -0.105 4.105 28 N -0.131 5.131 29 N -0.188 5.188 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.230 0.770 36 H 0.227 0.773 37 H 0.080 0.920 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -17.973 3.926 -0.585 18.406 hybrid contribution 0.715 1.520 -0.120 1.684 sum -17.259 5.445 -0.705 18.111 Atomic orbital electron populations 1.22050 0.92235 1.03560 1.03578 1.22095 0.96625 0.96128 0.80432 0.88110 1.23293 0.96017 1.01148 0.96720 1.19604 0.84917 0.98234 0.84265 0.85575 1.45040 1.04358 1.11740 1.78791 1.16038 0.80157 0.85798 0.78087 1.90980 1.84824 1.13577 1.54400 1.45249 1.05383 1.11725 1.75240 1.19621 0.77981 0.99187 0.87465 0.89599 1.20818 0.93985 1.12223 1.32011 0.90580 1.25071 0.98182 0.95687 0.95430 1.70401 1.16848 1.22681 1.37179 0.86277 0.79328 0.80002 0.80230 1.19900 1.20879 1.19809 1.23141 0.77300 0.72178 0.91567 1.93108 1.70804 1.76535 1.78972 1.93395 1.38231 1.84140 1.96165 1.92979 1.96537 1.40431 1.89408 1.25723 0.88745 0.90565 0.97985 1.70244 1.28294 1.27949 0.96739 1.26187 0.90544 0.93812 0.99951 1.77953 1.25294 1.23072 0.86744 1.51731 1.27929 1.33360 1.05825 0.91205 0.91492 0.90056 0.87245 0.86423 0.77018 0.77307 0.92044 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.48 37.16 0.35 -0.57 16 2 C 0.15 1.15 4.13 -66.97 -0.28 0.88 16 3 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -0.81 6.28 -25.15 -0.16 -0.96 16 5 C 0.24 2.86 3.22 -67.87 -0.22 2.64 16 6 H 0.13 1.64 7.67 -51.93 -0.40 1.24 16 7 N -0.74 -9.85 5.13 -58.62 -0.30 -10.15 16 8 C 0.70 13.50 8.09 -86.92 -0.70 12.79 16 9 O -0.56 -13.37 14.63 5.29 0.08 -13.30 16 10 N -0.72 -14.43 4.99 -59.81 -0.30 -14.73 16 11 C 0.26 6.53 2.21 -69.08 -0.15 6.38 16 12 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 13 C -0.55 -13.90 8.46 -34.44 -0.29 -14.19 16 14 H 0.08 1.78 7.74 -52.48 -0.41 1.37 16 15 C 0.07 1.69 5.20 -17.82 -0.09 1.59 16 16 N -0.84 -22.97 9.50 55.43 0.53 -22.45 16 17 Si 0.92 19.86 29.54 -169.99 -5.02 14.84 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.41 10.89 2.81 37.15 0.10 11.00 16 22 F -0.21 -5.71 15.67 2.25 0.04 -5.67 16 23 F -0.14 -3.90 12.91 2.25 0.03 -3.87 16 24 F -0.21 -5.37 16.94 2.25 0.04 -5.33 16 25 C 0.25 3.80 8.28 -155.32 -1.29 2.51 16 26 N -0.51 -9.12 11.20 -11.75 -0.13 -9.25 16 27 C 0.20 2.95 13.03 -91.93 -1.20 1.76 16 28 N -0.30 -4.45 12.80 29.27 0.37 -4.07 16 29 N -0.40 -5.10 4.53 -50.63 -0.23 -5.33 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.11 0.48 7.91 -51.93 -0.41 0.07 16 34 H 0.12 0.39 8.03 -51.93 -0.42 -0.03 16 35 H 0.40 3.83 8.59 -40.82 -0.35 3.48 16 36 H 0.39 6.61 8.55 -40.82 -0.35 6.26 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.22 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -36.12 335.36 -7.74 -43.86 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.97 Total: 6.58 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: -3.92 Total: 23.82 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.06 Total: -65.98 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.10 Total: -14.87 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.12 -7.74 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.197 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds