Wall clock time and date at job start Tue Mar 31 2020 17:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.21391 * 2 1 4 4 C 1.54436 * 110.24216 * 237.99420 * 2 1 3 5 5 C 1.54579 * 101.66514 * 215.49189 * 4 2 1 6 6 H 1.08997 * 110.47945 * 143.64145 * 5 4 2 7 7 N 1.46501 * 110.48186 * 266.26835 * 5 4 2 8 8 C 1.34774 * 119.99960 * 201.25736 * 7 5 4 9 9 O 1.21589 * 120.00222 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99862 * 180.02562 * 8 7 5 11 11 C 1.46504 * 120.00265 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46503 * 35.00074 * 11 10 8 13 13 C 1.50702 * 109.47424 * 154.99795 * 11 10 8 14 14 H 1.08008 * 119.99591 * 0.02562 * 13 11 10 15 15 C 1.37868 * 120.00045 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00102 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99985 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47384 * 59.99305 * 17 15 13 19 19 H 1.48497 * 109.47168 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46904 * 299.99421 * 17 15 13 21 21 C 1.52994 * 109.47289 * 275.00395 * 11 10 8 22 22 F 1.39900 * 109.47353 * 59.99779 * 21 11 10 23 23 F 1.39896 * 109.47211 * 179.97438 * 21 11 10 24 24 F 1.39901 * 109.47049 * 299.99532 * 21 11 10 25 25 C 1.51469 * 104.22105 * 24.95565 * 5 4 2 26 26 N 1.31168 * 141.93737 * 163.42113 * 25 5 4 27 27 C 1.33165 * 109.83471 * 180.25639 * 26 25 5 28 28 N 1.30651 * 108.95120 * 359.95749 * 27 26 25 29 29 N 1.34115 * 110.05342 * 343.55007 * 25 5 4 30 30 H 1.09002 * 109.47153 * 299.52611 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.52802 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.52784 * 1 2 3 33 33 H 1.08997 * 110.98694 * 333.58867 * 4 2 1 34 34 H 1.08997 * 110.98957 * 97.39959 * 4 2 1 35 35 H 0.97001 * 120.00029 * 21.26163 * 7 5 4 36 36 H 0.97001 * 120.00127 * 0.02562 * 10 8 7 37 37 H 0.97002 * 120.00165 * 180.02562 * 16 15 13 38 38 H 1.08005 * 125.52688 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0643 -0.7680 -1.2287 5 6 3.3289 -1.4427 -0.6499 6 1 3.4628 -2.4350 -1.0806 7 7 4.5107 -0.6124 -0.8951 8 6 5.7394 -1.1659 -0.8736 9 8 5.8670 -2.3543 -0.6503 10 7 6.8267 -0.4020 -1.0987 11 6 8.1623 -1.0034 -1.0748 12 1 8.1120 -2.0158 -1.4758 13 6 9.1009 -0.1763 -1.9151 14 1 8.7388 0.7091 -2.4164 15 6 10.4217 -0.5500 -2.0438 16 7 10.8628 -1.6279 -1.4329 17 14 11.5853 0.4757 -3.0847 18 1 11.6541 1.8545 -2.5377 19 1 12.9391 -0.1341 -3.0606 20 1 11.0878 0.5222 -4.4832 21 6 8.6747 -1.0505 0.3660 22 9 7.8035 -1.8184 1.1460 23 9 9.9499 -1.6254 0.3889 24 9 8.7392 0.2487 0.8807 25 6 3.0504 -1.5428 0.8356 26 7 3.4547 -2.1545 1.9232 27 6 2.7237 -1.7577 2.9631 28 7 1.8417 -0.8852 2.5534 29 7 2.0383 -0.7288 1.1696 30 1 -0.3633 0.5065 0.8942 31 1 -0.3633 -1.0277 -0.0085 32 1 -0.3634 0.5212 -0.8857 33 1 1.3442 -1.5131 -1.5668 34 1 2.3224 -0.0823 -2.0358 35 1 4.4090 0.3357 -1.0729 36 1 6.7249 0.5463 -1.2758 37 1 11.7922 -1.8905 -1.5231 38 1 2.8410 -2.1011 3.9803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932893923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:55 Heat of formation + Delta-G solvation = -76.496151 kcal Electronic energy + Delta-G solvation = -29938.840442 eV Core-core repulsion = 25210.983981 eV Total energy + Delta-G solvation = -4727.856461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.38165 -48.01832 -47.69828 -43.56013 -40.95716 -38.63783 -36.51577 -35.29208 -34.41521 -32.51096 -31.54603 -30.59248 -29.25630 -26.55502 -25.79347 -23.92030 -23.51714 -22.10773 -21.57299 -21.50115 -20.12961 -18.87422 -18.76932 -18.55543 -18.24707 -17.65119 -16.89926 -16.69104 -16.42058 -16.38264 -15.83324 -15.49398 -15.35325 -15.13313 -14.91667 -14.83481 -14.48466 -14.42346 -14.25755 -14.00202 -13.87906 -13.82900 -13.41487 -13.16497 -13.01125 -12.76906 -12.62814 -12.59981 -12.56261 -12.19601 -12.09413 -11.56547 -11.30794 -10.96086 -10.83198 -10.64611 -10.56106 -10.48615 -9.92188 -8.17404 -6.48681 0.44545 1.12731 1.48317 1.52258 1.55531 1.61676 2.02992 2.10503 2.40037 2.56328 2.69539 2.98273 3.19868 3.29483 3.41228 3.77444 3.82561 3.91561 3.97757 4.04063 4.16127 4.21588 4.39045 4.62767 4.74090 4.83851 4.89809 4.93935 5.19408 5.31635 5.35721 5.45094 5.46052 5.53965 5.62810 5.68402 6.07308 6.56472 7.12141 7.15073 7.22571 7.65075 8.75217 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.003532 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.252224 B = 7925.509792 C = 8666.787830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.135 3.865 3 H 0.121 0.879 4 C -0.108 4.108 5 C 0.233 3.767 6 H 0.110 0.890 7 N -0.716 5.716 8 C 0.697 3.303 9 O -0.612 6.612 10 N -0.717 5.717 11 C 0.273 3.727 12 H 0.048 0.952 13 C -0.559 4.559 14 H 0.096 0.904 15 C 0.014 3.986 16 N -0.876 5.876 17 Si 0.984 3.016 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.259 1.259 21 C 0.409 3.591 22 F -0.220 7.220 23 F -0.152 7.152 24 F -0.206 7.206 25 C 0.227 3.773 26 N -0.565 5.565 27 C 0.187 3.813 28 N -0.317 5.317 29 N -0.386 5.386 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.417 0.583 36 H 0.411 0.589 37 H 0.268 0.732 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.639 7.658 -3.499 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.035 3.965 3 H 0.139 0.861 4 C -0.147 4.147 5 C 0.123 3.877 6 H 0.128 0.872 7 N -0.375 5.375 8 C 0.397 3.603 9 O -0.491 6.491 10 N -0.371 5.371 11 C 0.165 3.835 12 H 0.066 0.934 13 C -0.596 4.596 14 H 0.114 0.886 15 C -0.192 4.192 16 N -0.510 5.510 17 Si 0.808 3.192 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.183 1.183 21 C 0.352 3.648 22 F -0.202 7.202 23 F -0.133 7.133 24 F -0.188 7.188 25 C -0.052 4.052 26 N -0.293 5.293 27 C -0.115 4.115 28 N -0.145 5.145 29 N -0.178 5.178 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.151 0.849 34 H 0.177 0.823 35 H 0.255 0.745 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -19.763 6.691 -2.699 21.038 hybrid contribution 1.147 0.681 0.575 1.453 sum -18.615 7.371 -2.125 20.134 Atomic orbital electron populations 1.22041 0.90555 1.03471 1.04644 1.22716 0.98066 0.96828 0.78894 0.86090 1.23450 0.92806 1.01817 0.96600 1.20018 0.86439 0.98312 0.82938 0.87167 1.44749 1.02739 1.12952 1.77035 1.16243 0.81462 0.85115 0.77509 1.90952 1.85807 1.15937 1.56370 1.44946 1.04121 1.12540 1.75529 1.19178 0.80324 0.97791 0.86211 0.93388 1.21196 0.94123 1.12598 1.31683 0.88616 1.26023 1.00025 0.96648 0.96464 1.70545 1.17072 1.24504 1.38863 0.85197 0.76717 0.78280 0.79021 1.19158 1.21319 1.18332 1.23506 0.76767 0.72115 0.92366 1.93093 1.70954 1.76840 1.79291 1.93368 1.39240 1.84442 1.96278 1.92973 1.96497 1.39907 1.89426 1.26185 0.89458 0.90885 0.98707 1.70150 1.30497 1.30156 0.98532 1.26679 0.90272 0.93892 1.00673 1.77842 1.25390 1.23108 0.88168 1.52112 1.27098 1.32707 1.05842 0.92684 0.92209 0.86328 0.84859 0.82328 0.74454 0.75278 0.92241 0.74073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.48 71.98 0.68 -0.55 16 2 C 0.13 1.60 4.13 45.41 0.19 1.79 16 3 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -0.86 6.28 31.62 0.20 -0.66 16 5 C 0.23 5.18 3.22 45.03 0.14 5.32 16 6 H 0.11 2.85 7.67 -2.39 -0.02 2.83 16 7 N -0.72 -17.73 5.13 -457.64 -2.35 -20.08 16 8 C 0.70 26.78 8.09 179.06 1.45 28.23 16 9 O -0.61 -30.02 14.63 -4.00 -0.06 -30.07 16 10 N -0.72 -28.22 4.99 -461.40 -2.30 -30.52 16 11 C 0.27 13.71 2.21 44.24 0.10 13.81 16 12 H 0.05 2.79 7.58 -2.38 -0.02 2.77 16 13 C -0.56 -27.71 8.46 25.60 0.22 -27.49 16 14 H 0.10 4.26 7.74 -2.91 -0.02 4.24 16 15 C 0.01 0.70 5.20 84.65 0.44 1.14 16 16 N -0.88 -48.83 9.50 21.44 0.20 -48.62 16 17 Si 0.98 39.89 29.54 68.60 2.03 41.92 16 18 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 21 C 0.41 21.93 2.81 71.98 0.20 22.13 16 22 F -0.22 -12.21 15.67 44.97 0.70 -11.50 16 23 F -0.15 -8.83 12.91 44.97 0.58 -8.25 16 24 F -0.21 -10.45 16.94 44.97 0.76 -9.69 16 25 C 0.23 6.85 8.28 138.47 1.15 8.00 16 26 N -0.57 -21.01 11.20 -191.10 -2.14 -23.15 16 27 C 0.19 5.71 13.03 180.81 2.36 8.07 16 28 N -0.32 -9.20 12.80 -61.32 -0.79 -9.98 16 29 N -0.39 -9.39 4.53 -314.10 -1.42 -10.81 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.13 0.54 7.91 -2.39 -0.02 0.52 16 34 H 0.16 0.05 8.03 -2.39 -0.02 0.03 16 35 H 0.42 6.65 8.59 -92.71 -0.80 5.85 16 36 H 0.41 13.01 8.55 -92.71 -0.79 12.22 16 37 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.24 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -83.11 335.36 1.91 -81.21 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.44 Total: 19.77 kcal Atomic # 6 Polarization: 52.66 SS G_CDS: 7.12 Total: 59.78 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -8.79 Total: -143.16 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.06 Total: -30.07 kcal Atomic # 9 Polarization: -31.49 SS G_CDS: 2.05 Total: -29.45 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -83.11 1.91 -81.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.710 kcal (2) G-P(sol) polarization free energy of solvation -83.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds