Wall clock time and date at job start Tue Mar 31 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39876 * 126.03660 * 2 1 4 4 N 1.30840 * 108.20156 * 179.97438 * 3 2 1 5 5 N 1.40087 * 108.20275 * 359.97438 * 4 3 2 6 6 C 1.46507 * 126.03573 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46853 * 305.02468 * 6 5 4 8 8 C 1.35314 * 126.66542 * 89.99923 * 7 6 5 9 9 C 1.42271 * 103.91962 * 180.02562 * 8 7 6 10 10 C 1.48329 * 126.93782 * 180.02562 * 9 8 7 11 11 O 1.21494 * 120.00146 * 359.72586 * 10 9 8 12 12 N 1.34784 * 120.00035 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72791 * 12 10 9 14 14 C 1.50699 * 109.46700 * 180.02562 * 13 12 10 15 15 O 1.21293 * 120.00551 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99696 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99963 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99684 * 0.02562 * 17 16 14 19 19 C 1.38943 * 119.99918 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00286 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99832 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47263 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47346 * 120.00358 * 21 19 17 24 24 H 1.48501 * 109.47057 * 240.00213 * 21 19 17 25 25 N 1.30985 * 106.12401 * 0.26018 * 9 8 7 26 26 O 1.20911 * 111.43919 * 359.54092 * 25 9 8 27 27 C 1.34946 * 107.92710 * 0.26216 * 5 4 3 28 28 H 1.08997 * 109.47312 * 89.97612 * 1 2 3 29 29 H 1.08997 * 109.47092 * 209.97542 * 1 2 3 30 30 H 1.09005 * 109.47396 * 329.97385 * 1 2 3 31 31 H 1.07993 * 125.89741 * 0.02562 * 3 2 1 32 32 H 1.08989 * 109.47074 * 185.02593 * 6 5 4 33 33 H 1.09003 * 109.47129 * 65.02349 * 6 5 4 34 34 H 1.07999 * 128.03874 * 359.97438 * 8 7 6 35 35 H 0.97005 * 119.99846 * 359.72579 * 12 10 9 36 36 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 37 37 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 38 38 H 0.96997 * 120.00319 * 359.97438 * 16 14 13 39 39 H 0.97004 * 120.00588 * 180.02562 * 20 19 17 40 40 H 1.08003 * 126.12697 * 179.73624 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1311 0.0000 4 7 3.5754 0.7304 0.0006 5 7 3.5844 -0.6705 0.0015 6 6 4.7746 -1.5247 0.0029 7 6 5.6589 -1.1559 -1.1603 8 6 6.6509 -0.2356 -1.1612 9 6 7.1580 -0.2802 -2.4897 10 6 8.2668 0.5314 -3.0484 11 8 8.8397 1.3415 -2.3473 12 7 8.6354 0.3737 -4.3352 13 6 9.7265 1.1796 -4.8886 14 6 9.9378 0.8132 -6.3350 15 8 9.2455 -0.0377 -6.8526 16 7 10.8963 1.4311 -7.0535 17 6 11.0889 1.0974 -8.3693 18 1 10.4724 0.3397 -8.8301 19 6 12.0766 1.7347 -9.1102 20 7 12.8263 2.6569 -8.5497 21 14 12.3386 1.2806 -10.9031 22 1 11.3727 0.2218 -11.2918 23 1 12.1282 2.4798 -11.7533 24 1 13.7238 0.7788 -11.0893 25 7 6.4447 -1.1791 -3.1213 26 8 5.6152 -1.6753 -2.3949 27 6 2.3031 -1.0941 -0.0043 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 1.9949 2.1578 0.0004 32 1 4.4729 -2.5682 -0.0866 33 1 5.3222 -1.3834 0.9348 34 1 6.9805 0.3884 -0.3437 35 1 8.1781 -0.2733 -4.8949 36 1 9.4707 2.2366 -4.8156 37 1 10.6409 0.9875 -4.3274 38 1 11.4497 2.1118 -6.6398 39 1 13.5156 3.1022 -9.0670 40 1 1.9724 -2.1222 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640241663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:42 Heat of formation + Delta-G solvation = 72.376839 kcal Electronic energy + Delta-G solvation = -26455.426840 eV Core-core repulsion = 22275.882736 eV Total energy + Delta-G solvation = -4179.544104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.36518 -41.54972 -39.62709 -38.15390 -35.33484 -34.58337 -34.14167 -33.73283 -32.29695 -31.56415 -31.39955 -28.21899 -28.09694 -25.85393 -25.16347 -23.90308 -22.95853 -21.63261 -20.76086 -20.00041 -19.58610 -18.27848 -18.20659 -17.87969 -17.07984 -17.02220 -15.99155 -15.73734 -15.36205 -15.34314 -14.86044 -14.58184 -14.34912 -14.11403 -14.00069 -13.91091 -13.74466 -13.49687 -13.42522 -12.89994 -12.80107 -12.28349 -12.26480 -12.07207 -11.78056 -11.65204 -11.16045 -10.89816 -10.64582 -10.42150 -10.37765 -10.26462 -9.99357 -9.85496 -9.67314 -8.98607 -8.72924 -8.67898 -8.12849 -6.53707 -3.95771 0.78207 1.28550 1.50105 2.24669 2.45717 2.50851 2.95078 3.08702 3.15230 3.21786 3.28992 3.70046 3.77746 4.02111 4.07707 4.15756 4.38728 4.59665 4.65281 4.73530 4.80337 4.91708 5.01958 5.07230 5.13259 5.14410 5.37256 5.42694 5.58201 5.66583 5.78256 5.80079 5.86365 6.00187 6.28247 6.46560 6.55972 7.32009 7.44444 7.49346 7.80378 7.88878 8.15925 8.42252 9.02293 9.35801 9.83677 10.63136 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.001813 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.154991 B =15441.976314 C =15670.946530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.239 4.239 3 C 0.053 3.947 4 N -0.284 5.284 5 N -0.379 5.379 6 C 0.227 3.773 7 C -0.075 4.075 8 C -0.132 4.132 9 C -0.023 4.023 10 C 0.595 3.405 11 O -0.528 6.528 12 N -0.689 5.689 13 C 0.108 3.892 14 C 0.426 3.574 15 O -0.594 6.594 16 N -0.547 5.547 17 C -0.305 4.305 18 H 0.107 0.893 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.315 5.315 26 O 0.133 5.867 27 C 0.057 3.943 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.183 0.817 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.185 0.815 35 H 0.418 0.582 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 -7.519 21.200 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.251 4.251 3 C -0.135 4.135 4 N -0.104 5.104 5 N -0.163 5.163 6 C 0.104 3.896 7 C -0.138 4.138 8 C -0.155 4.155 9 C -0.182 4.182 10 C 0.378 3.622 11 O -0.404 6.404 12 N -0.343 5.343 13 C -0.020 4.020 14 C 0.212 3.788 15 O -0.481 6.481 16 N -0.182 5.182 17 C -0.434 4.434 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.012 5.012 26 O 0.053 5.947 27 C -0.088 4.088 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.200 0.800 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.202 0.798 35 H 0.257 0.743 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.563 -7.537 19.938 28.265 hybrid contribution -0.269 0.181 -0.314 0.451 sum -18.831 -7.356 19.623 28.174 Atomic orbital electron populations 1.20062 0.89158 1.02173 1.01714 1.20201 0.97239 0.91863 1.15767 1.23904 0.89909 1.00022 0.99620 1.77466 1.21253 0.88275 1.23370 1.48545 1.04784 1.04954 1.57984 1.19884 0.82557 0.93869 0.93258 1.24187 1.01113 0.99898 0.88629 1.22469 0.96056 0.99402 0.97539 1.23546 1.00978 1.00106 0.93600 1.16771 0.81373 0.82000 0.82081 1.90797 1.54508 1.35592 1.59493 1.45582 1.36198 1.41718 1.10774 1.21069 0.90507 0.96016 0.94360 1.19665 0.85064 0.86657 0.87426 1.90522 1.49679 1.36100 1.71779 1.41784 1.30088 1.35155 1.11176 1.19797 1.16992 1.21069 0.85587 0.87569 1.25333 0.95763 0.95820 1.00789 1.69618 1.21156 1.24822 1.37782 0.85743 0.78328 0.78552 0.81389 1.19113 1.20575 1.20581 1.74264 1.00757 1.09595 1.16570 1.84809 1.42836 1.49610 1.17433 1.22388 0.83751 1.00268 1.02373 0.92002 0.92113 0.91817 0.79986 0.85851 0.85944 0.79816 0.74327 0.89285 0.89256 0.76992 0.91599 0.80688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.37 36.00 0.37 0.02 16 2 C -0.24 -1.75 6.10 -105.05 -0.64 -2.39 16 3 C 0.05 0.46 11.96 -17.36 -0.21 0.26 16 4 N -0.28 -3.04 12.41 30.63 0.38 -2.66 16 5 N -0.38 -3.02 3.67 -62.54 -0.23 -3.25 16 6 C 0.23 1.20 7.07 -5.19 -0.04 1.16 16 7 C -0.07 -0.70 6.91 -35.35 -0.24 -0.95 16 8 C -0.13 -1.53 10.92 -39.08 -0.43 -1.96 16 9 C -0.02 -0.35 7.19 -82.53 -0.59 -0.94 16 10 C 0.59 10.40 7.85 -12.10 -0.09 10.31 16 11 O -0.53 -10.15 16.95 5.37 0.09 -10.06 16 12 N -0.69 -12.66 5.53 -62.28 -0.34 -13.01 16 13 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 14 C 0.43 10.04 7.85 -10.98 -0.09 9.95 16 15 O -0.59 -15.79 15.24 5.55 0.08 -15.70 16 16 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 17 C -0.31 -8.38 9.68 -14.93 -0.14 -8.53 16 18 H 0.11 3.05 7.16 -52.48 -0.38 2.68 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 21 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 N -0.31 -4.61 11.84 33.29 0.39 -4.21 16 26 O 0.13 1.56 11.18 17.25 0.19 1.76 16 27 C 0.06 0.36 11.36 -17.23 -0.20 0.17 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 0.21 8.07 -51.94 -0.42 -0.21 16 33 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.42 7.97 7.20 -40.82 -0.29 7.67 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.18 0.49 8.06 -52.48 -0.42 0.07 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -35.17 366.59 -5.04 -40.21 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.35 Total: 13.03 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.43 Total: 9.70 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.87 Total: -60.14 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.37 Total: -24.00 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.17 -5.04 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640241663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.589 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds