Wall clock time and date at job start Tue Mar 31 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47555 * 2 1 4 4 C 1.53004 * 109.47134 * 239.99738 * 2 1 3 5 5 N 1.46503 * 109.47105 * 185.00164 * 4 2 1 6 6 C 1.34775 * 119.99698 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00278 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99619 * 179.97438 * 6 5 4 9 9 H 1.08996 * 108.89052 * 41.35902 * 8 6 5 10 10 C 1.52789 * 108.91278 * 282.81081 * 8 6 5 11 11 S 1.81973 * 108.34396 * 186.94372 * 10 8 6 12 12 O 1.42094 * 108.81393 * 308.26606 * 11 10 8 13 13 O 1.42104 * 108.87260 * 176.55560 * 11 10 8 14 14 C 1.81773 * 100.35427 * 62.40306 * 11 10 8 15 15 C 1.50083 * 109.25430 * 315.02454 * 14 11 10 16 16 O 1.21277 * 116.83058 * 200.93317 * 15 14 11 17 17 N 1.31821 * 126.34170 * 20.96579 * 15 14 11 18 18 N 1.46502 * 109.47163 * 120.00191 * 2 1 3 19 19 C 1.46504 * 120.00209 * 59.99641 * 18 2 1 20 20 C 1.36940 * 119.99903 * 240.00013 * 18 2 1 21 21 H 1.07997 * 120.00137 * 21.94357 * 20 18 2 22 22 C 1.38811 * 119.99970 * 201.93839 * 20 18 2 23 23 N 1.31620 * 120.00021 * 12.69087 * 22 20 18 24 24 Si 1.86795 * 120.00247 * 192.68772 * 22 20 18 25 25 H 1.48499 * 109.47295 * 59.99958 * 24 22 20 26 26 H 1.48492 * 109.47643 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47179 * 300.00383 * 24 22 20 28 28 H 1.08997 * 109.47189 * 60.00014 * 1 2 3 29 29 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47428 * 300.00157 * 1 2 3 31 31 H 1.09001 * 109.46863 * 65.00068 * 4 2 1 32 32 H 1.08993 * 109.47028 * 305.00231 * 4 2 1 33 33 H 0.96997 * 119.99950 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.68839 * 306.65930 * 10 8 6 35 35 H 1.09002 * 109.69495 * 67.23357 * 10 8 6 36 36 H 1.08998 * 109.50583 * 195.09624 * 14 11 10 37 37 H 1.08996 * 109.54533 * 74.98085 * 14 11 10 38 38 H 0.97009 * 115.27131 * 174.25673 * 17 15 14 39 39 H 1.09002 * 109.46600 * 94.31475 * 19 18 2 40 40 H 1.08996 * 109.46896 * 214.31939 * 19 18 2 41 41 H 1.09004 * 109.46813 * 334.32071 * 19 18 2 42 42 H 0.96998 * 120.00546 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4284 -2.1911 7 8 3.5700 -1.8826 -3.1403 8 6 5.6750 -1.5361 -2.1310 9 1 5.9700 -1.7919 -1.1134 10 6 6.2835 -0.1828 -2.4955 11 16 8.0880 -0.3813 -2.6208 12 8 8.5636 -1.0061 -1.4365 13 8 8.6582 0.8517 -3.0376 14 6 8.1915 -1.5691 -3.9929 15 6 7.1817 -2.6590 -3.7813 16 8 7.3742 -3.7044 -4.3651 17 7 6.1055 -2.5904 -3.0231 18 7 2.0183 -0.6907 1.1962 19 6 1.6643 -2.0933 1.4280 20 6 2.8056 -0.0252 2.0976 21 1 2.7847 1.0538 2.1396 22 6 3.6304 -0.7374 2.9574 23 7 3.8494 -2.0183 2.7487 24 14 4.4296 0.1221 4.4106 25 1 3.3762 0.6744 5.2996 26 1 5.2567 -0.8513 5.1678 27 1 5.2919 1.2268 3.9193 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -0.1584 -2.1370 32 1 1.6053 -1.7198 -1.2951 33 1 3.9824 -0.4622 -0.4319 34 1 5.8837 0.1540 -3.4520 35 1 6.0472 0.5468 -1.7208 36 1 9.1917 -2.0010 -4.0257 37 1 7.9844 -1.0586 -4.9334 38 1 5.5163 -3.3596 -3.0698 39 1 2.4538 -2.7362 1.0389 40 1 1.5486 -2.2666 2.4979 41 1 0.7272 -2.3203 0.9196 42 1 4.4261 -2.5160 3.3492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717481663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:47 Heat of formation + Delta-G solvation = -98.683529 kcal Electronic energy + Delta-G solvation = -27999.093646 eV Core-core repulsion = 23915.283008 eV Total energy + Delta-G solvation = -4083.810638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.124 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.86438 -39.38437 -37.48470 -37.01901 -36.47315 -35.81437 -33.98597 -32.33762 -31.15486 -30.84347 -29.42461 -26.66033 -26.14738 -24.86347 -23.15347 -21.17279 -20.32709 -19.54931 -19.11020 -18.14605 -17.86165 -17.26011 -17.03203 -16.49472 -16.24946 -15.81070 -15.49909 -15.41664 -15.30369 -14.68765 -14.32474 -13.96528 -13.84444 -13.31168 -13.17610 -12.92761 -12.82017 -12.64613 -12.48842 -12.41344 -12.30180 -12.19730 -11.76365 -11.72402 -11.31354 -11.21276 -10.88118 -10.82616 -10.52600 -10.44017 -10.36163 -10.05627 -9.99083 -9.92042 -9.37434 -8.74139 -8.68719 -6.96301 -5.88321 -3.36367 -0.59791 1.96674 2.17263 2.43860 2.60414 3.13493 3.28484 3.34763 3.36536 3.37888 3.51681 3.63749 4.12327 4.31705 4.34776 4.48162 4.76289 4.90953 4.97652 5.18748 5.24056 5.24799 5.43223 5.78079 5.92696 5.98159 6.15266 6.25043 6.29125 6.55265 6.65695 6.70781 6.82201 6.89495 7.28090 7.59445 7.63381 7.67037 7.79674 8.21928 8.34397 9.06970 9.69530 10.18434 11.14680 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.004253 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.248249 B = 6581.990801 C = 7789.385326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.070 0.930 4 C 0.105 3.895 5 N -0.687 5.687 6 C 0.509 3.491 7 O -0.544 6.544 8 C 0.133 3.867 9 H 0.131 0.869 10 C -0.616 4.616 11 S 2.427 3.573 12 O -0.908 6.908 13 O -0.920 6.920 14 C -0.628 4.628 15 C 0.544 3.456 16 O -0.532 6.532 17 N -0.697 5.697 18 N -0.595 5.595 19 C 0.162 3.838 20 C -0.267 4.267 21 H 0.068 0.932 22 C 0.008 3.992 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.282 1.282 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.418 0.582 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.419 0.581 39 H 0.029 0.971 40 H 0.043 0.957 41 H -0.002 1.002 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 4.264 -10.931 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.088 0.912 4 C -0.021 4.021 5 N -0.337 5.337 6 C 0.291 3.709 7 O -0.423 6.423 8 C 0.023 3.977 9 H 0.148 0.852 10 C -0.745 4.745 11 S 2.605 3.395 12 O -0.905 6.905 13 O -0.917 6.917 14 C -0.757 4.757 15 C 0.327 3.673 16 O -0.408 6.408 17 N -0.351 5.351 18 N -0.318 5.318 19 C 0.018 3.982 20 C -0.397 4.397 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.208 1.208 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.256 0.744 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.258 0.742 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.078 3.879 -11.259 12.587 hybrid contribution -0.240 0.029 0.773 0.810 sum 3.838 3.909 -10.486 11.831 Atomic orbital electron populations 1.22173 0.97337 1.01548 1.00769 1.20653 0.92768 0.95897 0.85804 0.91195 1.22073 0.79062 1.01493 0.99428 1.45796 1.08653 1.56846 1.22422 1.20026 0.88127 0.79347 0.83444 1.90718 1.69314 1.48610 1.33661 1.20318 0.95036 0.85730 0.96628 0.85176 1.30515 1.25979 1.04062 1.13918 1.08126 0.77967 0.76459 0.76996 1.93688 1.77166 1.77009 1.42646 1.93646 1.74336 1.40782 1.82978 1.30390 1.08474 1.13969 1.22864 1.18179 0.81083 0.88615 0.79398 1.90819 1.74385 1.28701 1.46890 1.44827 1.24359 1.22280 1.43599 1.43959 1.57895 1.09703 1.20214 1.20770 0.93957 0.84361 0.99112 1.19162 1.17063 0.90952 1.12488 0.91436 1.24984 0.97897 0.96086 1.00153 1.70045 1.39250 1.07318 1.37857 0.86397 0.78984 0.78583 0.82898 1.21149 1.21589 1.20847 0.93548 0.92902 0.92306 0.92463 0.91938 0.74396 0.83191 0.81581 0.81200 0.81169 0.74172 0.95271 0.93850 0.98313 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.18 37.15 0.34 -2.00 16 2 C 0.16 2.64 2.87 -67.93 -0.19 2.44 16 3 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16 4 C 0.11 1.66 4.97 -4.04 -0.02 1.64 16 5 N -0.69 -10.58 5.39 -60.29 -0.32 -10.91 16 6 C 0.51 7.43 6.92 -10.99 -0.08 7.35 16 7 O -0.54 -9.38 16.21 5.56 0.09 -9.29 16 8 C 0.13 1.54 3.18 -70.17 -0.22 1.32 16 9 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 10 C -0.62 -5.14 5.78 37.05 0.21 -4.93 16 11 S 2.43 21.85 5.43 -107.50 -0.58 21.27 16 12 O -0.91 -11.72 17.92 -57.79 -1.04 -12.75 16 13 O -0.92 -10.35 18.11 -57.79 -1.05 -11.40 16 14 C -0.63 -4.99 6.51 35.71 0.23 -4.75 16 15 C 0.54 6.57 7.64 -12.58 -0.10 6.47 16 16 O -0.53 -8.43 17.60 5.56 0.10 -8.33 16 17 N -0.70 -8.42 4.64 -57.14 -0.26 -8.69 16 18 N -0.59 -12.44 2.29 -173.48 -0.40 -12.84 16 19 C 0.16 3.56 8.11 59.85 0.49 4.04 16 20 C -0.27 -6.24 9.33 -15.06 -0.14 -6.38 16 21 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 22 C 0.01 0.20 5.10 -17.43 -0.09 0.11 16 23 N -0.90 -23.21 10.63 55.49 0.59 -22.62 16 24 Si 0.90 19.91 29.57 -169.99 -5.03 14.88 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.80 6.66 -51.93 -0.35 0.45 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 33 H 0.42 6.76 7.89 -40.82 -0.32 6.44 16 34 H 0.15 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.17 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.17 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.17 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.42 5.46 7.91 -40.82 -0.32 5.14 16 39 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 40 H 0.04 1.05 7.20 -51.93 -0.37 0.68 16 41 H 0.00 -0.03 6.43 -51.93 -0.33 -0.37 16 42 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -34.08 359.16 -7.88 -41.96 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.83 Total: 7.97 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 0.43 Total: 5.32 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.40 Total: -55.05 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.89 Total: -41.76 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Atomic # 16 Polarization: 21.85 SS G_CDS: -0.58 Total: 21.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.08 -7.88 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717481663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.722 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds