Wall clock time and date at job start Tue Mar 31 2020 18:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99587 * 2 1 4 4 H 1.48502 * 109.47133 * 269.99726 * 3 2 1 5 5 H 1.48501 * 109.47290 * 30.00209 * 3 2 1 6 6 H 1.48502 * 109.47097 * 149.99994 * 3 2 1 7 7 C 1.37872 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00323 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99950 * 180.02562 * 7 2 1 10 10 C 1.53496 * 114.20408 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98394 * 220.34339 * 10 9 7 12 12 C 1.34781 * 136.05549 * 207.08139 * 11 10 9 13 13 O 1.21279 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99699 * 180.02562 * 12 11 10 15 15 H 1.09003 * 115.59201 * 325.82615 * 14 12 11 16 16 C 1.53201 * 117.52187 * 111.64064 * 14 12 11 17 17 C 1.52113 * 117.52351 * 180.02562 * 14 12 11 18 18 C 1.52650 * 129.73191 * 133.60006 * 17 14 12 19 19 N 1.47659 * 87.64952 * 195.53447 * 18 17 14 20 20 C 1.46898 * 111.00389 * 137.99875 * 19 18 17 21 21 C 1.50695 * 109.47226 * 169.99789 * 20 19 18 22 22 N 1.29034 * 124.91330 * 90.00256 * 21 20 19 23 23 C 1.31776 * 117.12603 * 179.73408 * 22 21 20 24 24 C 1.33639 * 114.49979 * 359.97438 * 23 22 21 25 25 S 1.70972 * 124.92008 * 269.69560 * 21 20 19 26 26 C 1.47666 * 88.13622 * 26.18460 * 19 18 17 27 27 C 1.47064 * 87.88248 * 27.34391 * 11 10 9 28 28 H 0.96996 * 120.00254 * 359.97438 * 1 2 3 29 29 H 1.08996 * 113.28054 * 313.06819 * 9 7 2 30 30 H 1.09003 * 113.46852 * 105.56921 * 10 9 7 31 31 H 1.09000 * 113.52505 * 335.13435 * 10 9 7 32 32 H 1.09003 * 117.52365 * 0.02562 * 16 14 12 33 33 H 1.08995 * 117.57024 * 214.81845 * 16 14 12 34 34 H 1.09002 * 113.52674 * 80.83726 * 18 17 14 35 35 H 1.09001 * 113.52404 * 310.22815 * 18 17 14 36 36 H 1.09009 * 109.46778 * 49.99963 * 20 19 18 37 37 H 1.08999 * 109.47165 * 290.00396 * 20 19 18 38 38 H 1.07996 * 122.75531 * 179.97438 * 23 22 21 39 39 H 1.08002 * 126.03942 * 179.97438 * 24 23 22 40 40 H 1.09002 * 113.52164 * 88.51282 * 26 19 18 41 41 H 1.09004 * 113.51990 * 219.12005 * 26 19 18 42 42 H 1.09002 * 113.46686 * 87.43593 * 27 11 10 43 43 H 1.09003 * 113.46720 * 217.87093 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.1410 -2.5939 0.0010 11 7 5.1411 -2.0876 0.9530 12 6 6.4142 -2.3904 1.2757 13 8 6.9873 -3.2921 0.7018 14 6 7.1256 -1.6084 2.3497 15 1 6.8637 -0.5523 2.4149 16 6 7.4552 -2.3379 3.6560 17 6 8.5613 -1.9972 2.6682 18 6 9.7938 -1.1150 2.8495 19 7 10.6133 -2.3345 2.7027 20 6 11.7896 -2.0801 1.8603 21 6 12.7232 -3.2609 1.9315 22 7 12.6857 -4.2806 1.1417 23 6 13.5816 -5.2267 1.3391 24 6 14.4219 -4.9917 2.3513 25 16 13.9902 -3.4399 3.0654 26 6 9.5128 -2.9207 1.9117 27 6 4.1386 -1.1101 1.4025 28 1 -0.4850 0.8400 0.0004 29 1 3.9427 -0.5104 -0.7303 30 1 4.5641 -2.8796 -0.9620 31 1 3.4922 -3.3626 0.4209 32 1 7.1577 -3.3833 3.7379 33 1 7.4107 -1.7621 4.5804 34 1 9.8624 -0.6612 3.8382 35 1 9.9363 -0.3955 2.0433 36 1 12.3048 -1.1876 2.2157 37 1 11.4720 -1.9296 0.8286 38 1 13.6326 -6.1188 0.7326 39 1 15.2234 -5.6392 2.6751 40 1 9.5775 -2.7003 0.8461 41 1 9.3461 -3.9785 2.1154 42 1 3.4884 -1.4869 2.1921 43 1 4.5595 -0.1315 1.6335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278325310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:40 Heat of formation + Delta-G solvation = 127.481308 kcal Electronic energy + Delta-G solvation = -25171.351168 eV Core-core repulsion = 21540.489788 eV Total energy + Delta-G solvation = -3630.861380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91897 -39.83301 -39.31470 -37.35720 -35.16114 -32.67061 -31.83151 -29.75361 -28.62696 -26.19874 -25.95796 -25.11665 -24.99562 -23.23033 -22.73086 -20.24155 -20.07971 -18.86182 -18.34608 -18.03468 -17.21563 -16.79832 -16.22406 -16.04649 -15.50788 -15.11847 -15.00178 -14.78470 -14.42813 -14.07482 -14.00079 -13.64912 -13.25984 -13.11230 -12.86671 -12.82489 -12.37847 -12.01551 -11.84820 -11.79535 -11.69841 -11.61082 -10.89931 -10.73924 -10.67045 -10.46617 -10.38895 -10.12313 -9.88574 -9.82776 -9.68135 -9.39980 -9.23414 -9.15322 -9.02361 -8.68567 -8.05280 -6.23332 -4.26090 0.41810 1.09486 1.49022 2.55127 2.80784 3.18438 3.22769 3.27616 3.29156 3.59271 3.78300 4.09691 4.21870 4.28093 4.41100 4.55632 4.71521 4.87397 4.93812 4.99049 5.05680 5.09191 5.18436 5.20427 5.25962 5.35071 5.54019 5.61649 5.72166 5.75772 5.85962 5.89363 5.93225 5.94121 6.01177 6.11375 6.22991 6.32407 6.39891 6.54114 6.71496 7.11754 7.49095 7.52127 8.29522 8.37921 8.63106 8.80410 9.37499 10.88641 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.002100 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.874410 B =13327.897441 C =13683.595564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.513 4.513 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.114 3.886 11 N -0.641 5.641 12 C 0.561 3.439 13 O -0.555 6.555 14 C -0.161 4.161 15 H 0.123 0.877 16 C -0.107 4.107 17 C -0.140 4.140 18 C 0.043 3.957 19 N -0.468 5.468 20 C 0.091 3.909 21 C 0.067 3.933 22 N -0.470 5.470 23 C 0.041 3.959 24 C -0.267 4.267 25 S 0.132 5.868 26 C 0.066 3.934 27 C 0.087 3.913 28 H 0.267 0.733 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.652 -2.467 8.513 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.027 4.027 10 C -0.007 4.007 11 N -0.374 5.374 12 C 0.350 3.650 13 O -0.435 6.435 14 C -0.182 4.182 15 H 0.141 0.859 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.085 4.085 19 N -0.191 5.191 20 C -0.041 4.041 21 C -0.212 4.212 22 N -0.185 5.185 23 C -0.110 4.110 24 C -0.406 4.406 25 S 0.386 5.614 26 C -0.062 4.062 27 C -0.036 4.036 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 27.283 -2.628 9.238 28.924 hybrid contribution 0.143 0.498 -1.192 1.300 sum 27.426 -2.130 8.046 28.661 Atomic orbital electron populations 1.69893 1.06364 1.27329 1.49218 1.25018 0.94686 0.99187 0.93848 0.86879 0.80468 0.83537 0.78785 1.20175 1.21247 1.18525 1.20769 0.87453 0.94894 1.51937 0.90223 1.20801 0.96944 0.92829 0.92097 1.23109 0.86560 0.99408 0.91661 1.49889 1.09835 1.37577 1.40129 1.19040 0.80407 0.82955 0.82566 1.90652 1.66213 1.32204 1.54441 1.22068 0.97360 1.00817 0.97992 0.85943 1.22692 0.98191 1.01544 0.92050 1.21894 0.88104 1.00760 1.03392 1.23357 0.89554 0.92854 1.02739 1.68970 1.01520 1.13884 1.34773 1.21239 0.91842 0.92050 0.98953 1.26796 0.99935 0.98990 0.95433 1.66272 1.23858 1.01310 1.27083 1.21817 0.91978 0.99243 0.97987 1.27113 1.08284 1.01927 1.03285 1.83950 1.27270 1.15992 1.34224 1.23234 0.86583 1.00054 0.96329 1.23966 0.86988 0.90651 1.02005 0.92349 0.92178 0.92063 0.90175 0.87906 0.87391 0.88906 0.90422 0.88633 0.90258 0.80807 0.80656 0.89958 0.89394 0.89663 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 19.59 27.15 -169.99 -4.62 14.98 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.38 5.73 56.52 0.32 -5.06 16 7 C -0.51 -13.10 9.37 -34.44 -0.32 -13.42 16 8 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 9 C -0.01 -0.15 2.97 -91.12 -0.27 -0.42 16 10 C 0.11 2.27 8.17 -8.52 -0.07 2.20 16 11 N -0.64 -12.19 3.69 -185.08 -0.68 -12.87 16 12 C 0.56 10.23 7.86 -10.98 -0.09 10.15 16 13 O -0.56 -11.59 16.07 5.56 0.09 -11.50 16 14 C -0.16 -2.24 6.02 -92.12 -0.55 -2.80 16 15 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 16 C -0.11 -1.27 10.24 -27.05 -0.28 -1.55 16 17 C -0.14 -1.72 3.13 -155.75 -0.49 -2.21 16 18 C 0.04 0.42 7.71 -6.78 -0.05 0.36 16 19 N -0.47 -5.17 6.31 -245.39 -1.55 -6.72 16 20 C 0.09 0.88 5.39 -4.98 -0.03 0.85 16 21 C 0.07 0.72 6.97 -13.46 -0.09 0.63 16 22 N -0.47 -5.77 10.54 -11.87 -0.13 -5.89 16 23 C 0.04 0.40 11.35 -19.19 -0.22 0.18 16 24 C -0.27 -2.12 11.37 29.12 0.33 -1.79 16 25 S 0.13 1.11 23.18 -107.50 -2.49 -1.38 16 26 C 0.07 0.88 6.22 -6.77 -0.04 0.84 16 27 C 0.09 1.65 7.43 -8.39 -0.06 1.58 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.06 1.30 7.03 -51.93 -0.37 0.93 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 36 H 0.10 0.68 8.08 -51.92 -0.42 0.26 16 37 H 0.08 0.80 7.31 -51.93 -0.38 0.42 16 38 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 43 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -31.09 372.92 -11.50 -42.59 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.19 Total: 3.29 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.33 Total: -3.46 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -1.58 Total: -50.13 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.62 Total: 14.98 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.09 -11.50 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278325310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.066 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds