Wall clock time and date at job start Tue Mar 31 2020 18:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47101 * 2 1 4 4 S 1.80995 * 109.47241 * 120.00083 * 2 1 3 5 5 C 1.76205 * 100.00020 * 295.00125 * 4 2 1 6 6 N 1.31047 * 125.07516 * 359.97421 * 5 4 2 7 7 C 1.35878 * 109.61903 * 180.02562 * 6 5 4 8 8 C 1.39724 * 133.37243 * 179.97438 * 7 6 5 9 9 C 1.37695 * 119.77399 * 180.02562 * 8 7 6 10 10 C 1.38698 * 120.49633 * 359.97438 * 9 8 7 11 11 C 1.37975 * 120.43624 * 0.03957 * 10 9 8 12 12 C 1.38652 * 119.84956 * 359.97438 * 11 10 9 13 13 N 1.36634 * 125.07959 * 180.02562 * 5 4 2 14 14 C 1.46498 * 126.38529 * 359.97438 * 13 5 4 15 15 C 1.50703 * 109.47114 * 239.99929 * 2 1 3 16 16 O 1.21281 * 120.00223 * 265.00220 * 15 2 1 17 17 N 1.34779 * 120.00134 * 85.00059 * 15 2 1 18 18 C 1.46501 * 119.99493 * 359.97438 * 17 15 2 19 19 C 1.46495 * 120.00067 * 180.02562 * 17 15 2 20 20 C 1.50705 * 109.47375 * 90.00198 * 19 17 15 21 21 H 1.07997 * 119.99558 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00200 * 179.97438 * 20 19 17 23 23 N 1.31517 * 119.99756 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99877 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47219 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46861 * 120.00308 * 24 22 20 27 27 H 1.48502 * 109.47376 * 239.99783 * 24 22 20 28 28 H 1.09010 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47250 * 299.99550 * 1 2 3 30 30 H 1.08999 * 109.47024 * 60.00187 * 1 2 3 31 31 H 1.07996 * 120.11575 * 0.33538 * 8 7 6 32 32 H 1.08003 * 119.74676 * 179.97438 * 9 8 7 33 33 H 1.08002 * 119.78201 * 180.02562 * 10 9 8 34 34 H 1.07997 * 120.07641 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47462 * 269.97969 * 14 13 5 36 36 H 1.09003 * 109.47389 * 29.97445 * 14 13 5 37 37 H 1.09000 * 109.47220 * 149.97553 * 14 13 5 38 38 H 1.08998 * 109.47021 * 90.00515 * 18 17 15 39 39 H 1.09005 * 109.47139 * 210.00132 * 18 17 15 40 40 H 1.08999 * 109.47606 * 330.00070 * 18 17 15 41 41 H 1.09005 * 109.46727 * 209.99641 * 19 17 15 42 42 H 1.08992 * 109.47119 * 329.99711 * 19 17 15 43 43 H 0.97004 * 119.99586 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8532 1.4778 5 6 1.5439 0.2422 2.7257 6 7 0.8661 1.3416 2.5038 7 6 0.5723 1.9430 3.6863 8 6 -0.1142 3.1123 4.0236 9 6 -0.2505 3.4676 5.3469 10 6 0.2883 2.6731 6.3481 11 6 0.9692 1.5156 6.0315 12 6 1.1163 1.1426 4.7042 13 7 1.7261 0.0729 4.0692 14 6 2.4341 -1.0338 4.7175 15 6 2.0324 -0.7104 -1.2305 16 8 2.3208 -1.8872 -1.1761 17 7 2.1611 -0.0381 -2.3915 18 6 1.8121 1.3832 -2.4573 19 6 2.6489 -0.7289 -3.5877 20 6 1.4815 -1.3083 -4.3444 21 1 0.4767 -1.1757 -3.9712 22 6 1.6961 -2.0078 -5.5130 23 7 2.9197 -2.1697 -5.9671 24 14 0.2491 -2.7266 -6.4505 25 1 -1.0122 -2.4075 -5.7347 26 1 0.2045 -2.1430 -7.8153 27 1 0.4048 -4.2003 -6.5472 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.5409 3.7327 3.2494 32 1 -0.7808 4.3717 5.6072 33 1 0.1742 2.9626 7.3823 34 1 1.3860 0.9012 6.8157 35 1 1.7315 -1.8394 4.9308 36 1 3.2180 -1.4013 4.0553 37 1 2.8796 -0.6841 5.6489 38 1 2.6906 1.9842 -2.2228 39 1 1.4635 1.6256 -3.4613 40 1 1.0225 1.5973 -1.7371 41 1 3.1796 -0.0212 -4.2248 42 1 3.3255 -1.5311 -3.2935 43 1 3.0708 -2.6621 -6.7891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007093996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:56 Heat of formation + Delta-G solvation = 48.519419 kcal Electronic energy + Delta-G solvation = -25596.491375 eV Core-core repulsion = 21962.205950 eV Total energy + Delta-G solvation = -3634.285425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.12286 -39.19514 -37.45120 -34.94256 -34.55170 -33.18065 -32.22583 -30.67808 -29.54743 -27.82199 -27.19374 -26.02054 -24.37732 -23.80538 -22.57706 -22.22090 -21.03243 -18.90839 -17.60624 -17.43698 -16.72843 -16.67196 -16.54723 -16.11684 -15.44841 -14.88965 -14.65561 -14.30905 -14.27756 -14.26399 -13.88095 -13.58308 -13.22306 -13.07426 -12.97733 -12.26208 -12.22455 -12.20293 -12.06428 -11.95652 -11.73811 -11.71408 -11.53316 -11.22658 -10.89513 -10.63054 -10.56995 -10.36283 -10.18238 -10.09675 -9.65024 -9.18389 -9.07673 -8.46347 -8.35740 -7.75190 -7.53358 -6.07139 -4.11959 0.68377 0.97082 1.29892 1.94188 2.45341 2.52760 3.23004 3.28890 3.36782 3.41427 3.67099 3.85251 4.14288 4.40103 4.42441 4.67828 4.76872 4.84333 4.86859 5.03584 5.04647 5.13167 5.21678 5.23927 5.27702 5.29003 5.49957 5.60151 5.83511 5.86945 5.89155 5.95324 6.13880 6.19472 6.28149 6.29688 6.39784 6.62489 6.70825 6.95322 7.37099 7.44541 7.54338 7.88589 8.18528 8.25973 8.79005 8.96047 9.53146 11.01094 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.002577 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.851231 B =10861.398337 C =11354.600913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.119 0.881 4 S 0.059 5.941 5 C 0.258 3.742 6 N -0.495 5.495 7 C 0.059 3.941 8 C -0.067 4.067 9 C -0.128 4.128 10 C -0.108 4.108 11 C -0.109 4.109 12 C 0.050 3.950 13 N -0.480 5.480 14 C 0.077 3.923 15 C 0.525 3.475 16 O -0.528 6.528 17 N -0.590 5.590 18 C 0.075 3.925 19 C 0.245 3.755 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 10.103 24.472 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.233 4.233 3 H 0.137 0.863 4 S 0.291 5.709 5 C -0.114 4.114 6 N -0.219 5.219 7 C -0.062 4.062 8 C -0.088 4.088 9 C -0.149 4.149 10 C -0.128 4.128 11 C -0.130 4.130 12 C -0.060 4.060 13 N -0.172 5.172 14 C -0.065 4.065 15 C 0.308 3.692 16 O -0.406 6.406 17 N -0.322 5.322 18 C -0.069 4.069 19 C 0.126 3.874 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.562 8.548 23.638 25.266 hybrid contribution -1.175 0.484 0.056 1.272 sum -3.737 9.033 23.694 25.632 Atomic orbital electron populations 1.22024 0.90029 1.03794 1.04280 1.23647 1.02228 1.03774 0.93691 0.86281 1.86150 1.67114 1.24881 0.92761 1.25981 1.00017 0.98425 0.87019 1.71017 1.18842 1.06536 1.25507 1.19110 1.01737 0.96829 0.88482 1.20286 0.97950 0.94031 0.96501 1.20880 1.01600 1.00427 0.91986 1.20843 0.98370 0.94163 0.99432 1.19894 1.02762 0.98504 0.91835 1.18940 1.01274 0.90575 0.95258 1.45044 1.46543 1.20820 1.04804 1.22053 0.97454 0.87838 0.99152 1.19372 0.79320 0.86993 0.83517 1.90712 1.50278 1.15122 1.84477 1.48059 1.63488 1.10027 1.10609 1.21799 0.99581 0.82030 1.03454 1.19381 0.95416 0.92833 0.79758 1.21448 0.93409 1.34555 1.07122 0.92299 1.24938 0.95974 0.95903 0.97297 1.69944 1.19615 1.41485 1.22265 0.86431 0.82503 0.78988 0.79448 1.19753 1.20943 1.20845 0.91303 0.89565 0.90825 0.85287 0.85391 0.85412 0.86222 0.90257 0.88940 0.89482 0.93378 0.90305 0.91904 0.94605 0.93641 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.77 37.16 0.33 -1.83 16 2 C -0.10 -1.64 1.80 -27.88 -0.05 -1.69 16 3 H 0.12 1.78 6.91 -51.92 -0.36 1.43 16 4 S 0.06 0.90 20.30 -107.50 -2.18 -1.29 16 5 C 0.26 3.66 7.64 -88.45 -0.68 2.98 16 6 N -0.49 -7.35 8.64 -10.90 -0.09 -7.45 16 7 C 0.06 0.80 7.22 -84.68 -0.61 0.19 16 8 C -0.07 -0.73 10.10 -39.23 -0.40 -1.13 16 9 C -0.13 -1.09 10.01 -39.61 -0.40 -1.49 16 10 C -0.11 -0.86 10.03 -39.51 -0.40 -1.26 16 11 C -0.11 -1.01 10.04 -39.52 -0.40 -1.40 16 12 C 0.05 0.60 6.87 -83.84 -0.58 0.03 16 13 N -0.48 -5.76 3.23 -121.70 -0.39 -6.15 16 14 C 0.08 0.61 10.97 59.85 0.66 1.26 16 15 C 0.52 10.96 6.79 -10.98 -0.07 10.89 16 16 O -0.53 -13.14 15.71 5.56 0.09 -13.05 16 17 N -0.59 -12.51 2.86 -182.95 -0.52 -13.04 16 18 C 0.08 1.21 9.87 59.85 0.59 1.80 16 19 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 20 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 21 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 24 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 29 H 0.09 1.26 5.86 -51.93 -0.30 0.95 16 30 H 0.07 1.07 6.84 -51.93 -0.36 0.71 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.70 7.68 -51.93 -0.40 0.31 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.06 0.86 5.17 -51.93 -0.27 0.59 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -34.51 371.96 -10.07 -44.58 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.84 Total: -1.49 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.45 Total: 1.19 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.27 Total: -52.33 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.18 Total: -1.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.51 -10.07 -44.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007093996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.098 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds