Wall clock time and date at job start Tue Mar 31 2020 18:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47101 * 2 1 4 4 S 1.80995 * 109.47241 * 120.00083 * 2 1 3 5 5 C 1.76205 * 100.00020 * 295.00125 * 4 2 1 6 6 N 1.31047 * 125.07516 * 359.97421 * 5 4 2 7 7 C 1.35878 * 109.61903 * 180.02562 * 6 5 4 8 8 C 1.39724 * 133.37243 * 179.97438 * 7 6 5 9 9 C 1.37695 * 119.77399 * 180.02562 * 8 7 6 10 10 C 1.38698 * 120.49633 * 359.97438 * 9 8 7 11 11 C 1.37975 * 120.43624 * 0.03957 * 10 9 8 12 12 C 1.38652 * 119.84956 * 359.97438 * 11 10 9 13 13 N 1.36634 * 125.07959 * 180.02562 * 5 4 2 14 14 C 1.46498 * 126.38529 * 359.97438 * 13 5 4 15 15 C 1.50703 * 109.47114 * 239.99929 * 2 1 3 16 16 O 1.21281 * 120.00223 * 265.00220 * 15 2 1 17 17 N 1.34779 * 120.00134 * 85.00059 * 15 2 1 18 18 C 1.46501 * 119.99493 * 359.97438 * 17 15 2 19 19 C 1.46495 * 120.00067 * 180.02562 * 17 15 2 20 20 C 1.50705 * 109.47375 * 90.00198 * 19 17 15 21 21 H 1.07997 * 119.99558 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00200 * 179.97438 * 20 19 17 23 23 N 1.31517 * 119.99756 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99877 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47219 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46861 * 120.00308 * 24 22 20 27 27 H 1.48502 * 109.47376 * 239.99783 * 24 22 20 28 28 H 1.09010 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47250 * 299.99550 * 1 2 3 30 30 H 1.08999 * 109.47024 * 60.00187 * 1 2 3 31 31 H 1.07996 * 120.11575 * 0.33538 * 8 7 6 32 32 H 1.08003 * 119.74676 * 179.97438 * 9 8 7 33 33 H 1.08002 * 119.78201 * 180.02562 * 10 9 8 34 34 H 1.07997 * 120.07641 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47462 * 269.97969 * 14 13 5 36 36 H 1.09003 * 109.47389 * 29.97445 * 14 13 5 37 37 H 1.09000 * 109.47220 * 149.97553 * 14 13 5 38 38 H 1.08998 * 109.47021 * 90.00515 * 18 17 15 39 39 H 1.09005 * 109.47139 * 210.00132 * 18 17 15 40 40 H 1.08999 * 109.47606 * 330.00070 * 18 17 15 41 41 H 1.09005 * 109.46727 * 209.99641 * 19 17 15 42 42 H 1.08992 * 109.47119 * 329.99711 * 19 17 15 43 43 H 0.97004 * 119.99586 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1334 -0.8532 1.4778 5 6 1.5439 0.2422 2.7257 6 7 0.8661 1.3416 2.5038 7 6 0.5723 1.9430 3.6863 8 6 -0.1142 3.1123 4.0236 9 6 -0.2505 3.4676 5.3469 10 6 0.2883 2.6731 6.3481 11 6 0.9692 1.5156 6.0315 12 6 1.1163 1.1426 4.7042 13 7 1.7261 0.0729 4.0692 14 6 2.4341 -1.0338 4.7175 15 6 2.0324 -0.7104 -1.2305 16 8 2.3208 -1.8872 -1.1761 17 7 2.1611 -0.0381 -2.3915 18 6 1.8121 1.3832 -2.4573 19 6 2.6489 -0.7289 -3.5877 20 6 1.4815 -1.3083 -4.3444 21 1 0.4767 -1.1757 -3.9712 22 6 1.6961 -2.0078 -5.5130 23 7 2.9197 -2.1697 -5.9671 24 14 0.2491 -2.7266 -6.4505 25 1 -1.0122 -2.4075 -5.7347 26 1 0.2045 -2.1430 -7.8153 27 1 0.4048 -4.2003 -6.5472 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.5409 3.7327 3.2494 32 1 -0.7808 4.3717 5.6072 33 1 0.1742 2.9626 7.3823 34 1 1.3860 0.9012 6.8157 35 1 1.7315 -1.8394 4.9308 36 1 3.2180 -1.4013 4.0553 37 1 2.8796 -0.6841 5.6489 38 1 2.6906 1.9842 -2.2228 39 1 1.4635 1.6256 -3.4613 40 1 1.0225 1.5973 -1.7371 41 1 3.1796 -0.0212 -4.2248 42 1 3.3255 -1.5311 -3.2935 43 1 3.0708 -2.6621 -6.7891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007093996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:55 Heat of formation + Delta-G solvation = 28.613415 kcal Electronic energy + Delta-G solvation = -25597.354564 eV Core-core repulsion = 21962.205950 eV Total energy + Delta-G solvation = -3635.148614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.97257 -40.88605 -38.17529 -36.73475 -35.48172 -34.92739 -33.90557 -31.38249 -30.38653 -29.73911 -27.90872 -27.55056 -26.04474 -24.70200 -24.23941 -23.10607 -21.85087 -20.41005 -18.75652 -18.70368 -18.21100 -18.19620 -17.56763 -17.03313 -16.97516 -16.36670 -16.28545 -15.75311 -15.13959 -15.03682 -14.95679 -14.65649 -14.63117 -14.26173 -14.00242 -13.69320 -13.60800 -13.45326 -13.36431 -13.12099 -13.08736 -12.84483 -12.78340 -12.67161 -12.54380 -12.38481 -12.22995 -11.70829 -11.56188 -11.38164 -11.02798 -10.77804 -10.65734 -10.10858 -9.54089 -9.11667 -8.57947 -8.24031 -6.38265 -0.16178 -0.11274 0.55800 0.75522 1.36550 1.38725 1.50108 1.55845 1.61456 1.73931 2.21796 2.39924 2.90854 3.06211 3.32725 3.40768 3.73290 3.76266 3.93321 3.99297 4.14771 4.27652 4.30593 4.40155 4.49591 4.56330 4.58733 4.61962 4.63225 4.70645 4.83419 4.89510 4.95161 5.10555 5.16758 5.18989 5.43178 5.50297 5.57779 5.59577 5.76232 5.89623 5.93735 6.02543 6.54262 6.63286 6.70454 7.15075 7.34199 8.83678 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.002577 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.851231 B =10861.398337 C =11354.600913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.135 0.865 4 S 0.046 5.954 5 C 0.240 3.760 6 N -0.513 5.513 7 C 0.020 3.980 8 C -0.085 4.085 9 C -0.121 4.121 10 C -0.098 4.098 11 C -0.114 4.114 12 C 0.036 3.964 13 N -0.478 5.478 14 C 0.068 3.932 15 C 0.520 3.480 16 O -0.577 6.577 17 N -0.597 5.597 18 C 0.071 3.929 19 C 0.259 3.741 20 C -0.541 4.541 21 H 0.054 0.946 22 C 0.008 3.992 23 N -0.927 5.927 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.269 1.269 27 H -0.282 1.282 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.030 0.970 42 H 0.003 0.997 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 11.825 27.006 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.219 4.219 3 H 0.152 0.848 4 S 0.278 5.722 5 C -0.134 4.134 6 N -0.238 5.238 7 C -0.101 4.101 8 C -0.106 4.106 9 C -0.141 4.141 10 C -0.118 4.118 11 C -0.135 4.135 12 C -0.075 4.075 13 N -0.170 5.170 14 C -0.072 4.072 15 C 0.305 3.695 16 O -0.458 6.458 17 N -0.327 5.327 18 C -0.071 4.071 19 C 0.138 3.862 20 C -0.580 4.580 21 H 0.073 0.927 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.792 3.208 25 H -0.191 1.191 26 H -0.194 1.194 27 H -0.208 1.208 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.021 0.979 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.165 10.314 26.199 28.462 hybrid contribution -0.674 0.059 -0.542 0.867 sum -4.840 10.373 25.656 28.094 Atomic orbital electron populations 1.21963 0.89026 1.03190 1.05008 1.23411 1.02716 1.03743 0.92061 0.84760 1.86101 1.67783 1.25583 0.92766 1.25602 1.01444 0.98622 0.87688 1.70875 1.19079 1.06915 1.26932 1.19556 1.03611 0.98374 0.88513 1.20551 0.98370 0.93676 0.97972 1.21305 1.00571 1.01201 0.91010 1.21355 0.96301 0.92991 1.01108 1.20311 1.02725 0.99289 0.91166 1.19337 1.01484 0.90407 0.96229 1.45236 1.46213 1.21467 1.04074 1.22345 0.97566 0.87353 0.99963 1.20071 0.78244 0.86599 0.84561 1.90676 1.52219 1.17438 1.85449 1.48049 1.63234 1.11955 1.09483 1.22074 1.01629 0.79116 1.04325 1.18874 0.94297 0.91825 0.81206 1.21692 0.93618 1.35047 1.07633 0.92736 1.25841 0.98801 0.96143 0.98281 1.70055 1.21671 1.42123 1.22853 0.85368 0.79041 0.77950 0.78463 1.19122 1.19404 1.20764 0.92574 0.88689 0.90081 0.84910 0.82371 0.81807 0.83621 0.89148 0.89165 0.86791 0.90860 0.90453 0.89260 0.95173 0.97914 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.77 71.98 0.63 -3.39 16 2 C -0.09 -2.85 1.80 29.85 0.05 -2.80 16 3 H 0.13 3.96 6.91 -2.40 -0.02 3.94 16 4 S 0.05 1.44 20.30 -56.49 -1.15 0.29 16 5 C 0.24 6.79 7.64 179.59 1.37 8.17 16 6 N -0.51 -15.14 8.64 -188.40 -1.63 -16.76 16 7 C 0.02 0.51 7.22 39.42 0.28 0.80 16 8 C -0.09 -1.72 10.10 22.50 0.23 -1.49 16 9 C -0.12 -1.64 10.01 22.25 0.22 -1.42 16 10 C -0.10 -1.16 10.03 22.32 0.22 -0.93 16 11 C -0.11 -1.74 10.04 22.31 0.22 -1.52 16 12 C 0.04 0.81 6.87 38.72 0.27 1.07 16 13 N -0.48 -11.06 3.23 -538.95 -1.74 -12.81 16 14 C 0.07 0.99 10.97 127.77 1.40 2.39 16 15 C 0.52 22.40 6.79 87.66 0.60 22.99 16 16 O -0.58 -30.16 15.71 -3.03 -0.05 -30.20 16 17 N -0.60 -25.88 2.86 -851.13 -2.43 -28.32 16 18 C 0.07 2.21 9.87 127.77 1.26 3.47 16 19 C 0.26 14.02 5.16 85.64 0.44 14.46 16 20 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 21 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 22 C 0.01 0.49 5.46 84.65 0.46 0.95 16 23 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 24 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.09 2.74 5.86 -2.39 -0.01 2.73 16 30 H 0.08 2.28 6.84 -2.39 -0.02 2.27 16 31 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.34 7.68 -2.39 -0.02 1.32 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.45 8.07 -2.38 -0.02 2.43 16 40 H 0.09 2.31 5.17 -2.39 -0.01 2.30 16 41 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 42 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 43 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -78.13 371.96 4.25 -73.88 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.02 Total: 10.79 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 7.91 Total: 11.79 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -5.52 Total: -113.63 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.15 Total: 0.29 kcal Total: -78.13 4.25 -73.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007093996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.495 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds