Wall clock time and date at job start Tue Mar 31 2020 17:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47720 * 2 1 4 4 N 1.46492 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00303 * 272.19742 * 4 3 2 6 6 H 1.08003 * 119.99517 * 8.61509 * 5 4 3 7 7 C 1.38808 * 120.00464 * 188.60755 * 5 4 3 8 8 N 1.31622 * 119.99873 * 24.74790 * 7 5 4 9 9 Si 1.86798 * 120.00332 * 204.74033 * 7 5 4 10 10 H 1.48508 * 109.47093 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47237 * 120.00204 * 9 7 5 12 12 H 1.48503 * 109.47496 * 240.00488 * 9 7 5 13 13 C 1.46500 * 120.00434 * 92.20686 * 4 3 2 14 14 C 1.50694 * 109.47530 * 89.99360 * 13 4 3 15 15 N 1.29986 * 119.01718 * 0.02562 * 14 13 4 16 16 C 1.35206 * 121.54580 * 180.02562 * 15 14 13 17 17 S 1.75532 * 130.84477 * 179.97438 * 16 15 14 18 18 C 1.76308 * 92.41766 * 180.02562 * 17 16 15 19 19 C 1.32658 * 111.22926 * 359.97438 * 18 17 16 20 20 C 1.38524 * 119.54533 * 359.97438 * 16 15 14 21 21 C 1.42964 * 118.12696 * 359.97438 * 20 16 15 22 22 O 1.21892 * 120.75039 * 179.97438 * 21 20 16 23 23 N 1.34806 * 118.50186 * 0.02562 * 21 20 16 24 24 H 0.96993 * 119.84589 * 179.97438 * 23 21 20 25 25 C 1.52854 * 110.18426 * 180.02562 * 19 18 17 26 26 C 1.54141 * 104.99195 * 342.36895 * 25 19 18 27 27 C 1.52579 * 138.25564 * 179.97438 * 18 17 16 28 28 H 1.09004 * 109.46895 * 300.00082 * 1 2 3 29 29 H 1.09003 * 109.47123 * 59.99319 * 1 2 3 30 30 H 1.08996 * 109.47903 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46895 * 239.99918 * 2 1 3 32 32 H 1.09003 * 109.47123 * 120.00681 * 2 1 3 33 33 H 1.09004 * 109.46487 * 60.00087 * 3 2 1 34 34 H 1.08997 * 109.46969 * 300.00621 * 3 2 1 35 35 H 0.96999 * 119.99874 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46569 * 329.99180 * 13 4 3 37 37 H 1.09004 * 109.47349 * 210.00193 * 13 4 3 38 38 H 1.08996 * 110.35891 * 101.27890 * 25 19 18 39 39 H 1.09009 * 110.35712 * 223.46347 * 25 19 18 40 40 H 1.08998 * 111.00171 * 144.69939 * 26 25 19 41 41 H 1.08997 * 111.00586 * 268.55259 * 26 25 19 42 42 H 1.09003 * 110.36397 * 316.34835 * 27 18 17 43 43 H 1.08995 * 110.36340 * 78.55859 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1903 1.3965 1.1841 6 1 3.6598 1.2208 2.1083 7 6 5.5667 1.5759 1.1973 8 7 6.1520 2.2482 0.2288 9 14 6.5882 0.8634 2.5894 10 1 5.6980 0.1567 3.5452 11 1 7.5793 -0.0942 2.0363 12 1 7.2995 1.9606 3.2934 13 6 4.2371 1.4912 -1.2686 14 6 4.4882 2.9277 -1.6487 15 7 4.0582 3.8716 -0.8652 16 6 4.2548 5.1772 -1.1567 17 16 3.7872 6.6300 -0.2896 18 6 4.5109 7.6796 -1.5074 19 6 5.0596 6.9722 -2.4864 20 6 4.9299 5.5243 -2.3154 21 6 5.3964 4.4728 -3.1643 22 8 5.9955 4.7239 -4.1957 23 7 5.1579 3.1973 -2.7989 24 1 5.4654 2.4687 -3.3605 25 6 5.6795 7.9044 -3.5271 26 6 5.0367 9.2803 -3.2632 27 6 4.6893 9.1733 -1.7621 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 7.1138 2.3738 0.2382 36 1 3.6476 1.0070 -2.0473 37 1 5.1895 0.9726 -1.1586 38 1 6.7598 7.9585 -3.3922 39 1 5.4406 7.5612 -4.5338 40 1 5.7488 10.0854 -3.4446 41 1 4.1375 9.4133 -3.8647 42 1 3.7636 9.7078 -1.5486 43 1 5.5030 9.5673 -1.1533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049980989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:38 Heat of formation + Delta-G solvation = 28.559085 kcal Electronic energy + Delta-G solvation = -26794.657966 eV Core-core repulsion = 23159.506996 eV Total energy + Delta-G solvation = -3635.150970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35390 -39.65151 -38.88723 -37.63268 -35.43446 -34.61719 -33.15966 -32.31033 -30.00546 -29.16059 -27.49630 -27.24363 -25.70664 -24.45377 -22.99975 -21.89968 -21.61257 -20.76734 -19.26707 -19.05126 -18.49969 -17.95965 -17.15650 -16.93709 -16.75804 -16.25120 -15.85978 -15.68776 -15.53023 -14.84760 -14.65502 -14.24620 -13.97395 -13.83855 -13.69111 -13.55332 -13.37653 -13.27024 -13.05454 -12.77714 -12.56495 -12.50503 -12.19461 -12.07890 -12.03056 -11.97834 -11.92311 -11.79915 -11.69643 -11.32093 -11.22874 -10.74007 -10.54849 -10.48592 -9.43493 -8.93605 -8.70486 -7.87297 -5.12209 -0.44362 0.17691 0.71541 0.99830 1.37036 1.46638 1.54216 1.59915 1.89079 2.55067 2.77285 3.24915 3.38342 3.48266 3.53876 3.65519 3.94108 4.13907 4.17422 4.24398 4.34293 4.46573 4.59916 4.63301 4.65797 4.79105 4.80981 4.86232 4.87187 4.96255 5.05543 5.08286 5.14353 5.16465 5.30035 5.33671 5.34211 5.40749 5.51749 5.57545 5.68891 5.71497 5.75685 6.25250 6.87857 7.08310 7.24027 7.86764 8.25174 9.17490 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.004226 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.667941 B = 6623.356671 C = 7111.662414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.153 3.847 4 N -0.576 5.576 5 C -0.225 4.225 6 H 0.075 0.925 7 C -0.041 4.041 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.294 1.294 12 H -0.313 1.313 13 C 0.215 3.785 14 C 0.453 3.547 15 N -0.490 5.490 16 C 0.101 3.899 17 S 0.187 5.813 18 C -0.237 4.237 19 C -0.079 4.079 20 C -0.290 4.290 21 C 0.554 3.446 22 O -0.582 6.582 23 N -0.629 5.629 24 H 0.423 0.577 25 C -0.059 4.059 26 C -0.103 4.103 27 C -0.032 4.032 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 6.784 -5.279 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.028 3.972 4 N -0.293 5.293 5 C -0.355 4.355 6 H 0.093 0.907 7 C -0.235 4.235 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.242 1.242 13 C 0.084 3.916 14 C 0.183 3.817 15 N -0.213 5.213 16 C -0.135 4.135 17 S 0.451 5.549 18 C -0.353 4.353 19 C -0.090 4.090 20 C -0.306 4.306 21 C 0.350 3.650 22 O -0.465 6.465 23 N -0.270 5.270 24 H 0.263 0.737 25 C -0.098 4.098 26 C -0.142 4.142 27 C -0.072 4.072 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.971 7.327 -3.639 11.422 hybrid contribution 2.538 -0.969 -1.088 2.927 sum -5.432 6.358 -4.727 9.606 Atomic orbital electron populations 1.21668 0.94835 1.01826 1.01653 1.21946 0.95803 0.98006 1.01391 1.20918 0.82082 0.95001 0.99192 1.44101 1.01208 1.82677 1.01343 1.19407 0.89603 1.39192 0.87277 0.90737 1.25037 0.98077 1.00661 0.99767 1.69909 1.08572 1.42021 1.36450 0.85460 0.79008 0.77465 0.79909 1.19594 1.22087 1.24171 1.20246 0.98812 0.84558 0.87971 1.25321 0.79743 0.99697 0.76979 1.68002 1.29296 0.95862 1.28157 1.24146 0.96377 0.98239 0.94782 1.83501 1.57969 0.90491 1.22908 1.25911 1.08044 1.02543 0.98805 1.21104 0.99576 0.89203 0.99074 1.20553 1.14658 0.94790 1.00579 1.16895 0.79689 0.82902 0.85517 1.90796 1.44940 1.83716 1.27032 1.44513 1.49866 1.09584 1.23037 0.73749 1.21137 0.99598 0.93087 0.96011 1.22387 1.01879 0.95316 0.94576 1.21067 1.03465 0.85271 0.97385 0.93120 0.92485 0.91980 0.92305 0.93388 0.94674 0.93836 0.94961 0.89173 0.88252 0.90597 0.91654 0.87120 0.89647 0.88599 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.13 -3.83 6.25 30.59 0.19 -3.64 16 3 C 0.15 5.42 5.67 86.38 0.49 5.91 16 4 N -0.58 -24.21 1.89 -706.36 -1.34 -25.55 16 5 C -0.22 -10.84 9.69 84.03 0.81 -10.02 16 6 H 0.07 3.63 7.94 -2.91 -0.02 3.61 16 7 C -0.04 -2.07 4.90 84.86 0.42 -1.66 16 8 N -0.92 -47.94 8.89 21.65 0.19 -47.75 16 9 Si 0.95 42.78 29.62 68.60 2.03 44.81 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 13 C 0.22 8.38 5.38 85.63 0.46 8.84 16 14 C 0.45 18.99 5.71 138.03 0.79 19.78 16 15 N -0.49 -22.51 9.19 -182.32 -1.68 -24.19 16 16 C 0.10 4.42 7.67 84.24 0.65 5.06 16 17 S 0.19 6.69 23.24 -56.49 -1.31 5.38 16 18 C -0.24 -7.53 7.25 25.13 0.18 -7.35 16 19 C -0.08 -2.89 6.60 -18.21 -0.12 -3.01 16 20 C -0.29 -12.59 6.07 -19.91 -0.12 -12.71 16 21 C 0.55 24.48 7.82 85.42 0.67 25.15 16 22 O -0.58 -27.28 17.88 -4.96 -0.09 -27.37 16 23 N -0.63 -24.75 5.26 -309.10 -1.63 -26.38 16 24 H 0.42 13.89 8.78 -92.71 -0.81 13.08 16 25 C -0.06 -1.70 6.81 30.93 0.21 -1.49 16 26 C -0.10 -1.94 7.15 31.47 0.22 -1.72 16 27 C -0.03 -0.68 6.82 30.95 0.21 -0.47 16 28 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 1.32 8.06 -2.38 -0.02 1.31 16 34 H 0.04 1.47 8.05 -2.39 -0.02 1.45 16 35 H 0.24 12.93 8.31 -92.71 -0.77 12.16 16 36 H 0.09 2.78 8.07 -2.38 -0.02 2.76 16 37 H 0.10 4.25 6.30 -2.39 -0.02 4.23 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.47 366.11 2.18 -63.28 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.23 Total: 17.62 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.78 Total: 20.14 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -4.45 Total: -123.87 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.09 Total: -27.37 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.31 Total: 5.38 kcal Total: -65.47 2.18 -63.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049980989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.843 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds