Wall clock time and date at job start Tue Mar 31 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46855 * 2 1 4 4 C 1.50703 * 109.47111 * 119.99737 * 2 1 3 5 5 N 1.27929 * 124.23944 * 253.15810 * 4 2 1 6 6 C 1.34667 * 117.84575 * 180.02562 * 5 4 2 7 7 C 1.40966 * 129.68064 * 179.97438 * 6 5 4 8 8 C 1.36180 * 120.41665 * 179.97438 * 7 6 5 9 9 C 1.38785 * 120.78129 * 0.02717 * 8 7 6 10 10 C 1.37647 * 120.07046 * 359.97438 * 9 8 7 11 11 C 1.39345 * 119.95225 * 359.97438 * 10 9 8 12 12 S 1.70648 * 124.23519 * 72.85945 * 4 2 1 13 13 N 1.46895 * 109.47248 * 239.99955 * 2 1 3 14 14 C 1.46903 * 110.99883 * 56.01718 * 13 2 1 15 15 C 1.46897 * 110.99882 * 179.97438 * 13 2 1 16 16 C 1.50702 * 109.47206 * 169.99834 * 15 13 2 17 17 O 1.21283 * 120.00116 * 0.02562 * 16 15 13 18 18 N 1.34779 * 120.00320 * 179.97438 * 16 15 13 19 19 C 1.46493 * 120.00273 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.47371 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99762 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99841 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99627 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00199 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47014 * 90.00009 * 24 22 20 26 26 H 1.48498 * 109.46853 * 209.99715 * 24 22 20 27 27 H 1.48496 * 109.47218 * 329.99922 * 24 22 20 28 28 H 1.08994 * 109.47473 * 299.99698 * 1 2 3 29 29 H 1.08999 * 109.47071 * 60.00234 * 1 2 3 30 30 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.79277 * 0.02562 * 7 6 5 32 32 H 1.08006 * 119.60531 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.96597 * 179.97438 * 9 8 7 34 34 H 1.08002 * 120.03062 * 179.97438 * 10 9 8 35 35 H 1.09007 * 109.46588 * 177.39355 * 14 13 2 36 36 H 1.08995 * 109.47028 * 57.39619 * 14 13 2 37 37 H 1.08996 * 109.46868 * 297.38956 * 14 13 2 38 38 H 1.08997 * 109.47183 * 289.99640 * 15 13 2 39 39 H 1.08997 * 109.47298 * 50.00275 * 15 13 2 40 40 H 0.97010 * 119.99647 * 0.02562 * 18 16 15 41 41 H 1.09000 * 109.47498 * 300.00633 * 19 18 16 42 42 H 1.09001 * 109.47050 * 60.00662 * 19 18 16 43 43 H 0.96996 * 119.99680 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.5612 -0.1220 2.2359 6 6 2.9668 -0.8844 3.2692 7 6 3.5729 -0.5052 4.4841 8 6 3.9096 -1.4457 5.4096 9 6 3.6642 -2.7916 5.1763 10 6 3.0736 -3.1910 3.9988 11 6 2.7213 -2.2427 3.0406 12 16 1.9604 -2.3998 1.4604 13 7 2.0197 -0.6925 -1.1994 14 6 1.4725 -0.0835 -2.4191 15 6 3.4882 -0.7115 -1.2336 16 6 3.9532 -1.6313 -2.3331 17 8 3.1412 -2.2132 -3.0208 18 7 5.2713 -1.8064 -2.5528 19 6 5.7234 -2.7009 -3.6213 20 6 7.2299 -2.7204 -3.6565 21 1 7.7941 -2.1261 -2.9530 22 6 7.8877 -3.4968 -4.5868 23 7 9.2024 -3.5133 -4.6178 24 14 6.9117 -4.5239 -5.8040 25 1 6.6464 -3.7235 -7.0263 26 1 7.6902 -5.7358 -6.1651 27 1 5.6226 -4.9290 -5.1881 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.7708 0.5378 4.6824 32 1 4.3730 -1.1405 6.3362 33 1 3.9370 -3.5264 5.9193 34 1 2.8833 -4.2386 3.8177 35 1 1.8871 -0.5857 -3.2933 36 1 1.7370 0.9734 -2.4477 37 1 0.3874 -0.1868 -2.4214 38 1 3.8603 0.2957 -1.4208 39 1 3.8693 -1.0677 -0.2765 40 1 5.9208 -1.3406 -2.0030 41 1 5.3516 -3.7082 -3.4335 42 1 5.3419 -2.3454 -4.5785 43 1 9.6652 -4.0598 -5.2720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053099473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:40 Heat of formation + Delta-G solvation = 34.384836 kcal Electronic energy + Delta-G solvation = -25614.957581 eV Core-core repulsion = 21980.059235 eV Total energy + Delta-G solvation = -3634.898346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62235 -39.46725 -37.94657 -36.51151 -34.27217 -32.37942 -31.91177 -31.34193 -29.82834 -28.66165 -27.38271 -25.63827 -24.44938 -23.22824 -22.06921 -21.54214 -20.50740 -19.85177 -18.56666 -17.34723 -17.07002 -16.47010 -15.96086 -15.83539 -15.50275 -15.27749 -14.84575 -14.61762 -14.44843 -14.32822 -14.01254 -13.64368 -13.43135 -12.80517 -12.73517 -12.55519 -12.52069 -12.29101 -12.23161 -12.18015 -12.02771 -11.74231 -11.37973 -11.30659 -11.00573 -10.96884 -10.75133 -10.28397 -9.97089 -9.80071 -9.50024 -9.21254 -8.83463 -8.77852 -8.47708 -8.25982 -8.12829 -6.21581 -4.23880 0.20639 0.92036 1.12516 1.68846 2.11274 3.20360 3.25527 3.28427 3.33754 3.41894 3.47655 3.67304 4.24107 4.33366 4.36003 4.56690 4.70748 4.81016 4.95874 5.01029 5.07956 5.09554 5.13574 5.26090 5.30007 5.42549 5.46476 5.48612 5.55796 5.58397 5.62855 5.85641 5.90480 5.95841 6.12410 6.15500 6.44280 6.68277 6.82696 6.85945 7.07204 7.22915 7.39109 7.43018 8.13548 8.51122 8.75365 8.93445 9.38428 10.90421 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.003188 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.637349 B = 8781.836775 C =10283.166875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.150 3.850 3 H 0.076 0.924 4 C 0.094 3.906 5 N -0.471 5.471 6 C 0.082 3.918 7 C -0.065 4.065 8 C -0.109 4.109 9 C -0.105 4.105 10 C -0.069 4.069 11 C -0.198 4.198 12 S 0.160 5.840 13 N -0.517 5.517 14 C 0.020 3.980 15 C 0.031 3.969 16 C 0.505 3.495 17 O -0.539 6.539 18 N -0.707 5.707 19 C 0.223 3.777 20 C -0.544 4.544 21 H 0.079 0.921 22 C 0.077 3.923 23 N -0.893 5.893 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.395 0.605 41 H 0.026 0.974 42 H 0.020 0.980 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 6.551 18.558 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.038 3.962 3 H 0.093 0.907 4 C -0.190 4.190 5 N -0.185 5.185 6 C -0.039 4.039 7 C -0.086 4.086 8 C -0.130 4.130 9 C -0.127 4.127 10 C -0.091 4.091 11 C -0.317 4.317 12 S 0.418 5.582 13 N -0.242 5.242 14 C -0.128 4.128 15 C -0.100 4.100 16 C 0.289 3.711 17 O -0.417 6.417 18 N -0.356 5.356 19 C 0.101 3.899 20 C -0.582 4.582 21 H 0.097 0.903 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.703 3.297 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.184 1.184 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.229 0.771 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.363 5.342 17.258 25.057 hybrid contribution 0.888 0.860 0.400 1.299 sum -16.476 6.202 17.658 24.934 Atomic orbital electron populations 1.21938 0.91682 1.03660 1.02918 1.20262 0.96335 0.95158 0.84426 0.90680 1.26567 0.99058 0.95459 0.97919 1.66184 1.13446 1.38385 1.00500 1.19147 1.02108 0.87666 0.95006 1.20371 0.97341 1.00497 0.90415 1.20717 1.00040 0.92859 0.99379 1.21137 0.98537 0.96318 0.96741 1.20378 0.98226 0.98283 0.92250 1.24194 1.08304 0.98383 1.00868 1.84444 1.58233 1.06899 1.08649 1.61702 1.06798 1.53921 1.01772 1.22624 1.00962 0.96495 0.92673 1.22065 0.88737 0.99415 0.99831 1.20177 0.83214 0.82919 0.84824 1.90619 1.53266 1.48817 1.48959 1.46173 1.05680 1.47251 1.36494 1.19474 0.95577 0.89234 0.85645 1.21099 0.88669 1.29254 1.19151 0.90303 1.24801 0.94840 0.96025 0.96972 1.69886 1.07084 1.40073 1.35935 0.86810 0.80790 0.80239 0.81826 1.19870 1.20896 1.18437 0.91483 0.90604 0.91013 0.84972 0.84885 0.84827 0.85148 0.88494 0.95734 0.90775 0.91714 0.88866 0.77132 0.95655 0.96186 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.81 37.16 0.33 -0.96 16 2 C 0.15 1.70 2.56 -68.86 -0.18 1.52 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.09 1.20 4.58 -13.90 -0.06 1.14 16 5 N -0.47 -6.40 10.57 -9.09 -0.10 -6.50 16 6 C 0.08 1.05 7.00 -84.96 -0.59 0.46 16 7 C -0.07 -0.67 10.05 -39.29 -0.39 -1.07 16 8 C -0.11 -0.90 9.94 -40.12 -0.40 -1.29 16 9 C -0.11 -0.87 10.04 -39.60 -0.40 -1.27 16 10 C -0.07 -0.70 10.07 -39.39 -0.40 -1.09 16 11 C -0.20 -2.46 6.56 -38.54 -0.25 -2.71 16 12 S 0.16 2.03 22.73 -107.50 -2.44 -0.41 16 13 N -0.52 -6.89 4.17 -237.73 -0.99 -7.88 16 14 C 0.02 0.24 8.67 60.07 0.52 0.76 16 15 C 0.03 0.45 5.29 -4.98 -0.03 0.43 16 16 C 0.50 9.58 7.50 -10.98 -0.08 9.49 16 17 O -0.54 -11.82 14.35 5.55 0.08 -11.74 16 18 N -0.71 -14.45 5.55 -61.47 -0.34 -14.79 16 19 C 0.22 5.49 4.50 -5.20 -0.02 5.46 16 20 C -0.54 -14.99 9.83 -34.44 -0.34 -15.33 16 21 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 22 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 24 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.58 6.40 -51.93 -0.33 0.25 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.10 1.48 5.80 -51.92 -0.30 1.18 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.76 6.39 -51.93 -0.33 0.43 16 38 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 39 H 0.09 1.37 6.62 -51.93 -0.34 1.03 16 40 H 0.40 7.25 8.32 -40.82 -0.34 6.91 16 41 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 42 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -33.18 367.79 -10.34 -43.52 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.80 Total: 3.64 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.39 Total: -2.36 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.66 Total: -54.99 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.44 Total: -0.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.18 -10.34 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053099473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.908 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds