Wall clock time and date at job start Tue Mar 31 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46855 * 2 1 4 4 C 1.50703 * 109.47111 * 119.99737 * 2 1 3 5 5 N 1.27929 * 124.23944 * 253.15810 * 4 2 1 6 6 C 1.34667 * 117.84575 * 180.02562 * 5 4 2 7 7 C 1.40966 * 129.68064 * 179.97438 * 6 5 4 8 8 C 1.36180 * 120.41665 * 179.97438 * 7 6 5 9 9 C 1.38785 * 120.78129 * 0.02717 * 8 7 6 10 10 C 1.37647 * 120.07046 * 359.97438 * 9 8 7 11 11 C 1.39345 * 119.95225 * 359.97438 * 10 9 8 12 12 S 1.70648 * 124.23519 * 72.85945 * 4 2 1 13 13 N 1.46895 * 109.47248 * 239.99955 * 2 1 3 14 14 C 1.46903 * 110.99883 * 56.01718 * 13 2 1 15 15 C 1.46897 * 110.99882 * 179.97438 * 13 2 1 16 16 C 1.50702 * 109.47206 * 169.99834 * 15 13 2 17 17 O 1.21283 * 120.00116 * 0.02562 * 16 15 13 18 18 N 1.34779 * 120.00320 * 179.97438 * 16 15 13 19 19 C 1.46493 * 120.00273 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.47371 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99762 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99841 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99627 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00199 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47014 * 90.00009 * 24 22 20 26 26 H 1.48498 * 109.46853 * 209.99715 * 24 22 20 27 27 H 1.48496 * 109.47218 * 329.99922 * 24 22 20 28 28 H 1.08994 * 109.47473 * 299.99698 * 1 2 3 29 29 H 1.08999 * 109.47071 * 60.00234 * 1 2 3 30 30 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.79277 * 0.02562 * 7 6 5 32 32 H 1.08006 * 119.60531 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.96597 * 179.97438 * 9 8 7 34 34 H 1.08002 * 120.03062 * 179.97438 * 10 9 8 35 35 H 1.09007 * 109.46588 * 177.39355 * 14 13 2 36 36 H 1.08995 * 109.47028 * 57.39619 * 14 13 2 37 37 H 1.08996 * 109.46868 * 297.38956 * 14 13 2 38 38 H 1.08997 * 109.47183 * 289.99640 * 15 13 2 39 39 H 1.08997 * 109.47298 * 50.00275 * 15 13 2 40 40 H 0.97010 * 119.99647 * 0.02562 * 18 16 15 41 41 H 1.09000 * 109.47498 * 300.00633 * 19 18 16 42 42 H 1.09001 * 109.47050 * 60.00662 * 19 18 16 43 43 H 0.96996 * 119.99680 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.5612 -0.1220 2.2359 6 6 2.9668 -0.8844 3.2692 7 6 3.5729 -0.5052 4.4841 8 6 3.9096 -1.4457 5.4096 9 6 3.6642 -2.7916 5.1763 10 6 3.0736 -3.1910 3.9988 11 6 2.7213 -2.2427 3.0406 12 16 1.9604 -2.3998 1.4604 13 7 2.0197 -0.6925 -1.1994 14 6 1.4725 -0.0835 -2.4191 15 6 3.4882 -0.7115 -1.2336 16 6 3.9532 -1.6313 -2.3331 17 8 3.1412 -2.2132 -3.0208 18 7 5.2713 -1.8064 -2.5528 19 6 5.7234 -2.7009 -3.6213 20 6 7.2299 -2.7204 -3.6565 21 1 7.7941 -2.1261 -2.9530 22 6 7.8877 -3.4968 -4.5868 23 7 9.2024 -3.5133 -4.6178 24 14 6.9117 -4.5239 -5.8040 25 1 6.6464 -3.7235 -7.0263 26 1 7.6902 -5.7358 -6.1651 27 1 5.6226 -4.9290 -5.1881 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.7708 0.5378 4.6824 32 1 4.3730 -1.1405 6.3362 33 1 3.9370 -3.5264 5.9193 34 1 2.8833 -4.2386 3.8177 35 1 1.8871 -0.5857 -3.2933 36 1 1.7370 0.9734 -2.4477 37 1 0.3874 -0.1868 -2.4214 38 1 3.8603 0.2957 -1.4208 39 1 3.8693 -1.0677 -0.2765 40 1 5.9208 -1.3406 -2.0030 41 1 5.3516 -3.7082 -3.4335 42 1 5.3419 -2.3454 -4.5785 43 1 9.6652 -4.0598 -5.2720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053099473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:39 Heat of formation + Delta-G solvation = 10.858813 kcal Electronic energy + Delta-G solvation = -25615.977746 eV Core-core repulsion = 21980.059235 eV Total energy + Delta-G solvation = -3635.918511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48792 -40.82417 -39.04041 -37.43413 -36.11132 -34.42178 -32.88483 -32.07789 -30.91373 -30.06784 -28.68846 -26.72665 -25.39222 -24.14697 -23.77821 -22.47072 -21.58076 -21.30445 -19.42449 -19.18308 -17.89350 -17.87907 -17.41729 -16.86854 -16.70515 -16.26809 -16.19541 -15.98574 -15.67167 -15.36150 -15.09211 -14.86231 -14.56291 -14.52723 -14.14532 -13.91610 -13.59338 -13.31744 -13.18186 -13.07546 -12.93249 -12.84090 -12.75919 -12.57769 -12.44426 -12.20289 -11.93411 -11.77931 -11.67414 -11.11902 -10.92525 -10.78557 -10.71756 -9.94028 -9.64803 -9.47960 -9.11562 -8.40910 -6.48299 -0.62798 0.16722 0.24704 0.78893 1.27507 1.32501 1.34635 1.47604 1.68547 2.14098 2.27767 2.59992 2.70508 2.94391 3.06501 3.55985 3.76671 3.82715 3.96618 4.07261 4.16690 4.18330 4.20977 4.30044 4.34720 4.47629 4.60110 4.62426 4.76334 4.78029 4.82016 4.91627 5.02397 5.06578 5.14101 5.23434 5.25628 5.26445 5.41851 5.51065 5.67605 5.78597 5.89648 6.08102 6.52169 6.52794 6.81503 7.14366 7.37968 8.73987 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.003188 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.637349 B = 8781.836775 C =10283.166875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.154 3.846 3 H 0.083 0.917 4 C 0.090 3.910 5 N -0.485 5.485 6 C 0.050 3.950 7 C -0.079 4.079 8 C -0.101 4.101 9 C -0.094 4.094 10 C -0.087 4.087 11 C -0.212 4.212 12 S 0.128 5.872 13 N -0.529 5.529 14 C 0.022 3.978 15 C 0.045 3.955 16 C 0.506 3.494 17 O -0.567 6.567 18 N -0.709 5.709 19 C 0.236 3.764 20 C -0.548 4.548 21 H 0.056 0.944 22 C 0.026 3.974 23 N -0.932 5.932 24 Si 0.939 3.061 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.260 1.260 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.405 0.595 41 H 0.012 0.988 42 H 0.014 0.986 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.467 6.922 20.062 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 H 0.100 0.900 4 C -0.195 4.195 5 N -0.199 5.199 6 C -0.070 4.070 7 C -0.100 4.100 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.109 4.109 11 C -0.331 4.331 12 S 0.386 5.614 13 N -0.255 5.255 14 C -0.125 4.125 15 C -0.086 4.086 16 C 0.292 3.708 17 O -0.447 6.447 18 N -0.360 5.360 19 C 0.112 3.888 20 C -0.586 4.586 21 H 0.074 0.926 22 C -0.174 4.174 23 N -0.570 5.570 24 Si 0.763 3.237 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.184 1.184 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.240 0.760 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.398 5.741 18.793 26.919 hybrid contribution 1.251 0.768 0.111 1.472 sum -17.147 6.508 18.904 26.339 Atomic orbital electron populations 1.21936 0.89881 1.03656 1.04202 1.20349 0.97632 0.94855 0.82905 0.89957 1.26743 0.99305 0.95144 0.98299 1.66176 1.13747 1.38949 1.01013 1.19551 1.03522 0.87994 0.95922 1.20703 0.97423 1.01793 0.90040 1.21181 0.98549 0.92465 0.99938 1.21617 0.96397 0.97218 0.96357 1.20736 0.98803 0.98715 0.92673 1.24363 1.08952 0.98900 1.00867 1.84405 1.59256 1.07760 1.10020 1.61654 1.05693 1.55199 1.02958 1.22581 1.01956 0.97011 0.90911 1.21886 0.90070 0.99047 0.97592 1.20867 0.82087 0.82687 0.85121 1.90606 1.53819 1.49997 1.50233 1.46048 1.06827 1.47097 1.36010 1.19068 0.93550 0.89420 0.86729 1.21296 0.90131 1.28672 1.18533 0.92569 1.25623 0.95721 0.97244 0.98848 1.69990 1.08643 1.41276 1.37129 0.85829 0.79285 0.78977 0.79647 1.18825 1.19809 1.18400 0.90580 0.88880 0.91663 0.83860 0.81363 0.81395 0.83904 0.91630 0.93833 0.88758 0.89606 0.88865 0.76003 0.97011 0.96782 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.81 71.98 0.63 -1.63 16 2 C 0.15 3.30 2.56 44.17 0.11 3.42 16 3 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 4 C 0.09 2.26 4.58 88.68 0.41 2.66 16 5 N -0.48 -13.02 10.57 -182.51 -1.93 -14.95 16 6 C 0.05 1.27 7.00 39.78 0.28 1.55 16 7 C -0.08 -1.50 10.05 22.46 0.23 -1.28 16 8 C -0.10 -1.36 9.94 21.92 0.22 -1.14 16 9 C -0.09 -1.28 10.04 22.26 0.22 -1.06 16 10 C -0.09 -1.64 10.07 22.40 0.23 -1.42 16 11 C -0.21 -5.22 6.56 22.94 0.15 -5.06 16 12 S 0.13 3.31 22.73 -56.49 -1.28 2.03 16 13 N -0.53 -13.62 4.17 -906.04 -3.78 -17.40 16 14 C 0.02 0.51 8.67 127.69 1.11 1.62 16 15 C 0.05 1.30 5.29 85.56 0.45 1.75 16 16 C 0.51 19.19 7.50 87.66 0.66 19.85 16 17 O -0.57 -25.05 14.35 -3.04 -0.04 -25.09 16 18 N -0.71 -29.20 5.55 -466.79 -2.59 -31.78 16 19 C 0.24 11.72 4.50 85.64 0.38 12.10 16 20 C -0.55 -30.72 9.83 25.60 0.25 -30.47 16 21 H 0.06 3.32 7.84 -2.91 -0.02 3.30 16 22 C 0.03 1.48 5.47 84.65 0.46 1.94 16 23 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 24 Si 0.94 44.32 27.47 68.60 1.88 46.21 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.19 6.40 -2.39 -0.02 1.17 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.06 1.97 5.80 -2.38 -0.01 1.96 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.76 6.39 -2.39 -0.02 1.74 16 38 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 39 H 0.09 2.72 6.62 -2.39 -0.02 2.70 16 40 H 0.41 14.99 8.32 -92.70 -0.77 14.22 16 41 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 42 H 0.01 0.72 7.57 -2.39 -0.02 0.71 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.73 367.79 -1.44 -74.17 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.21 Total: 19.81 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 5.79 Total: 2.83 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -8.00 Total: -119.95 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.04 Total: -25.09 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.28 Total: 2.03 kcal Total: -72.73 -1.44 -74.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053099473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.028 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds