Wall clock time and date at job start Tue Mar 31 2020 18:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47767 * 2 1 4 4 C 1.50702 * 109.47364 * 239.99431 * 2 1 3 5 5 N 1.27923 * 124.23711 * 285.70375 * 4 2 1 6 6 C 1.34671 * 117.84400 * 180.02562 * 5 4 2 7 7 C 1.40968 * 129.68966 * 179.97438 * 6 5 4 8 8 C 1.36186 * 120.42256 * 180.25711 * 7 6 5 9 9 C 1.38791 * 120.77885 * 359.53216 * 8 7 6 10 10 C 1.37651 * 120.06524 * 0.45266 * 9 8 7 11 11 C 1.39339 * 119.95317 * 359.78441 * 10 9 8 12 12 S 1.70648 * 124.23595 * 105.71309 * 4 2 1 13 13 N 1.46904 * 109.47221 * 119.99913 * 2 1 3 14 14 C 1.46899 * 110.99961 * 304.08025 * 13 2 1 15 15 C 1.46899 * 111.00296 * 180.12814 * 13 2 1 16 16 C 1.50696 * 109.47432 * 189.99983 * 15 13 2 17 17 O 1.21285 * 120.00061 * 0.02562 * 16 15 13 18 18 N 1.34780 * 120.00395 * 179.97438 * 16 15 13 19 19 C 1.46494 * 120.00098 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.47037 * 180.02562 * 19 18 16 21 21 H 1.07990 * 119.99728 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99653 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99345 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47360 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46810 * 120.00167 * 24 22 20 27 27 H 1.48496 * 109.46939 * 239.99773 * 24 22 20 28 28 H 1.09003 * 109.47202 * 300.00233 * 1 2 3 29 29 H 1.09000 * 109.47192 * 59.99932 * 1 2 3 30 30 H 1.08996 * 109.47694 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.79202 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.60532 * 179.75062 * 8 7 6 33 33 H 1.07999 * 119.96240 * 180.23834 * 9 8 7 34 34 H 1.08003 * 120.02395 * 179.76664 * 10 9 8 35 35 H 1.09002 * 109.47280 * 66.05958 * 14 13 2 36 36 H 1.09000 * 109.47013 * 186.05807 * 14 13 2 37 37 H 1.08997 * 109.47495 * 306.06197 * 14 13 2 38 38 H 1.09000 * 109.47004 * 310.00232 * 15 13 2 39 39 H 1.09000 * 109.47039 * 69.99777 * 15 13 2 40 40 H 0.96993 * 119.99669 * 0.02562 * 18 16 15 41 41 H 1.09000 * 109.47410 * 300.00310 * 19 18 16 42 42 H 1.09000 * 109.47292 * 60.00259 * 19 18 16 43 43 H 0.96999 * 119.99518 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.0024 -1.9792 -1.3915 6 6 2.4873 -2.4785 -2.5444 7 6 2.5769 -3.8165 -2.9789 8 6 3.1130 -4.1122 -4.1954 9 6 3.5717 -3.1051 -5.0331 10 6 3.4966 -1.7895 -4.6351 11 6 2.9555 -1.4685 -3.3919 12 16 2.7126 0.0766 -2.5831 13 7 2.0196 -0.6925 1.1995 14 6 1.4706 -0.0850 2.4191 15 6 3.4881 -0.7095 1.2350 16 6 3.9534 -1.6291 2.3344 17 8 3.1417 -2.2134 3.0205 18 7 5.2717 -1.8032 2.5545 19 6 5.7240 -2.6968 3.6236 20 6 7.2305 -2.7143 3.6600 21 1 7.7945 -2.1196 2.9568 22 6 7.8886 -3.4904 4.5904 23 7 7.2018 -4.2149 5.4464 24 14 9.7560 -3.5125 4.6349 25 1 10.2871 -2.6176 3.5755 26 1 10.2251 -3.0401 5.9623 27 1 10.2402 -4.8970 4.4027 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2222 -4.6127 -2.3411 32 1 3.1789 -5.1422 -4.5133 33 1 3.9910 -3.3542 -5.9967 34 1 3.8572 -1.0066 -5.2860 35 1 0.3926 -0.2435 2.4504 36 1 1.9310 -0.5454 3.2933 37 1 1.6807 0.9845 2.4186 38 1 3.8706 -1.0645 0.2780 39 1 3.8586 0.2982 1.4230 40 1 5.9208 -1.3363 2.0056 41 1 5.3419 -2.3411 4.5805 42 1 5.3530 -3.7045 3.4363 43 1 7.6649 -4.7606 6.1011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053099474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:44 Heat of formation + Delta-G solvation = 32.872195 kcal Electronic energy + Delta-G solvation = -25640.229494 eV Core-core repulsion = 22005.265555 eV Total energy + Delta-G solvation = -3634.963939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63367 -39.27149 -37.84232 -36.32596 -34.10317 -32.31055 -31.82042 -31.33953 -29.70474 -28.30627 -26.97890 -25.54103 -24.45898 -23.13538 -22.42276 -22.05000 -19.89226 -19.54191 -18.77722 -17.15566 -16.91545 -16.29631 -15.82125 -15.58481 -15.47211 -15.21955 -14.84561 -14.60719 -14.42698 -14.25495 -14.03618 -13.55981 -13.30775 -12.70132 -12.64787 -12.50214 -12.29040 -12.19742 -12.04772 -11.93038 -11.85727 -11.67073 -11.23906 -11.15881 -11.08826 -10.92756 -10.83771 -10.33496 -10.29453 -9.63729 -9.35371 -8.97760 -8.83939 -8.71039 -8.32913 -8.23612 -7.81232 -6.14672 -4.21277 0.21060 0.92356 1.01218 1.50518 2.18698 3.24396 3.31263 3.34444 3.43421 3.49146 3.58192 3.71840 4.25719 4.34566 4.45335 4.59551 4.71965 4.85168 4.91726 4.99015 5.09998 5.21322 5.23874 5.30340 5.35210 5.49458 5.58952 5.62121 5.64028 5.66504 5.73117 5.89885 5.98297 6.03916 6.14617 6.28700 6.46462 6.91429 7.02265 7.35675 7.49742 7.55878 7.56748 7.70634 7.99757 8.67540 8.82194 9.16993 9.45527 10.95606 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.003177 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.985273 B = 8810.996514 C =10473.367140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.156 3.844 3 H 0.062 0.938 4 C 0.101 3.899 5 N -0.429 5.429 6 C 0.083 3.917 7 C -0.058 4.058 8 C -0.109 4.109 9 C -0.102 4.102 10 C -0.074 4.074 11 C -0.180 4.180 12 S 0.081 5.919 13 N -0.501 5.501 14 C 0.020 3.980 15 C 0.035 3.965 16 C 0.503 3.497 17 O -0.535 6.535 18 N -0.716 5.716 19 C 0.252 3.748 20 C -0.542 4.542 21 H 0.063 0.937 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.020 0.980 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.388 0.612 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 9.871 -21.309 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.044 3.956 3 H 0.080 0.920 4 C -0.186 4.186 5 N -0.140 5.140 6 C -0.038 4.038 7 C -0.079 4.079 8 C -0.130 4.130 9 C -0.124 4.124 10 C -0.097 4.097 11 C -0.299 4.299 12 S 0.338 5.662 13 N -0.226 5.226 14 C -0.127 4.127 15 C -0.096 4.096 16 C 0.287 3.713 17 O -0.412 6.412 18 N -0.365 5.365 19 C 0.131 3.869 20 C -0.580 4.580 21 H 0.081 0.919 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.220 0.780 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.824 9.555 -20.406 25.446 hybrid contribution 1.815 0.044 -0.416 1.863 sum -10.009 9.599 -20.822 25.018 Atomic orbital electron populations 1.21876 0.91620 1.04104 1.02301 1.20332 0.96791 0.93282 0.85197 0.92015 1.26650 1.00066 0.91991 0.99858 1.66146 1.16773 1.11822 1.19275 1.19331 1.00360 0.95123 0.88942 1.20498 0.97970 0.93216 0.96176 1.20757 0.98447 1.00065 0.93738 1.21139 0.99334 0.91931 0.99992 1.20321 0.99025 0.97173 0.93182 1.23876 1.08572 0.96114 1.01347 1.83874 1.62002 1.07868 1.12484 1.61569 1.06448 1.53613 1.00964 1.22625 1.01263 0.95820 0.93016 1.22024 0.88882 0.98837 0.99899 1.20134 0.83344 0.83075 0.84793 1.90632 1.53258 1.48468 1.48869 1.46439 1.05483 1.47605 1.36954 1.19076 0.94198 0.88808 0.84781 1.21270 0.90795 1.28210 1.17765 0.91925 1.24951 0.99015 0.94951 0.95102 1.69988 1.35678 1.27733 1.18858 0.86375 0.84676 0.77950 0.77992 1.19660 1.20792 1.20783 0.90898 0.91935 0.90476 0.84537 0.84723 0.84809 0.85294 0.90910 0.88673 0.96142 0.89216 0.92421 0.77965 0.95604 0.95568 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.81 37.15 0.33 -1.06 16 2 C 0.16 1.84 2.54 -68.87 -0.18 1.67 16 3 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 4 C 0.10 1.30 4.50 -13.91 -0.06 1.24 16 5 N -0.43 -6.52 10.48 -9.09 -0.10 -6.62 16 6 C 0.08 1.14 7.00 -84.96 -0.59 0.55 16 7 C -0.06 -0.68 10.05 -39.29 -0.39 -1.08 16 8 C -0.11 -0.98 9.94 -40.11 -0.40 -1.38 16 9 C -0.10 -0.84 10.04 -39.59 -0.40 -1.24 16 10 C -0.07 -0.70 10.07 -39.39 -0.40 -1.10 16 11 C -0.18 -2.14 6.56 -38.55 -0.25 -2.40 16 12 S 0.08 0.87 23.10 -107.50 -2.48 -1.62 16 13 N -0.50 -7.51 4.32 -237.74 -1.03 -8.54 16 14 C 0.02 0.28 8.57 60.06 0.52 0.79 16 15 C 0.04 0.56 5.29 -4.98 -0.03 0.53 16 16 C 0.50 10.52 7.46 -10.99 -0.08 10.44 16 17 O -0.53 -13.18 14.39 5.55 0.08 -13.10 16 18 N -0.72 -15.69 5.55 -61.47 -0.34 -16.03 16 19 C 0.25 6.85 5.43 -5.19 -0.03 6.82 16 20 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 21 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 24 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.07 0.62 6.48 -51.93 -0.34 0.29 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.07 0.88 6.60 -51.93 -0.34 0.54 16 36 H 0.09 1.63 5.79 -51.93 -0.30 1.32 16 37 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 38 H 0.09 1.43 6.75 -51.93 -0.35 1.08 16 39 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.39 7.38 8.32 -40.82 -0.34 7.04 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -34.50 371.99 -10.78 -45.28 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.85 Total: 4.45 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.38 Total: 0.16 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.73 Total: -56.87 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.48 Total: -1.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.50 -10.78 -45.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053099474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.156 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds