Wall clock time and date at job start Tue Mar 31 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47767 * 2 1 4 4 C 1.50702 * 109.47364 * 239.99431 * 2 1 3 5 5 N 1.27923 * 124.23711 * 285.70375 * 4 2 1 6 6 C 1.34671 * 117.84400 * 180.02562 * 5 4 2 7 7 C 1.40968 * 129.68966 * 179.97438 * 6 5 4 8 8 C 1.36186 * 120.42256 * 180.25711 * 7 6 5 9 9 C 1.38791 * 120.77885 * 359.53216 * 8 7 6 10 10 C 1.37651 * 120.06524 * 0.45266 * 9 8 7 11 11 C 1.39339 * 119.95317 * 359.78441 * 10 9 8 12 12 S 1.70648 * 124.23595 * 105.71309 * 4 2 1 13 13 N 1.46904 * 109.47221 * 119.99913 * 2 1 3 14 14 C 1.46899 * 110.99961 * 304.08025 * 13 2 1 15 15 C 1.46899 * 111.00296 * 180.12814 * 13 2 1 16 16 C 1.50696 * 109.47432 * 189.99983 * 15 13 2 17 17 O 1.21285 * 120.00061 * 0.02562 * 16 15 13 18 18 N 1.34780 * 120.00395 * 179.97438 * 16 15 13 19 19 C 1.46494 * 120.00098 * 179.97438 * 18 16 15 20 20 C 1.50706 * 109.47037 * 180.02562 * 19 18 16 21 21 H 1.07990 * 119.99728 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99653 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99345 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47360 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46810 * 120.00167 * 24 22 20 27 27 H 1.48496 * 109.46939 * 239.99773 * 24 22 20 28 28 H 1.09003 * 109.47202 * 300.00233 * 1 2 3 29 29 H 1.09000 * 109.47192 * 59.99932 * 1 2 3 30 30 H 1.08996 * 109.47694 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.79202 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.60532 * 179.75062 * 8 7 6 33 33 H 1.07999 * 119.96240 * 180.23834 * 9 8 7 34 34 H 1.08003 * 120.02395 * 179.76664 * 10 9 8 35 35 H 1.09002 * 109.47280 * 66.05958 * 14 13 2 36 36 H 1.09000 * 109.47013 * 186.05807 * 14 13 2 37 37 H 1.08997 * 109.47495 * 306.06197 * 14 13 2 38 38 H 1.09000 * 109.47004 * 310.00232 * 15 13 2 39 39 H 1.09000 * 109.47039 * 69.99777 * 15 13 2 40 40 H 0.96993 * 119.99669 * 0.02562 * 18 16 15 41 41 H 1.09000 * 109.47410 * 300.00310 * 19 18 16 42 42 H 1.09000 * 109.47292 * 60.00259 * 19 18 16 43 43 H 0.96999 * 119.99518 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.0024 -1.9792 -1.3915 6 6 2.4873 -2.4785 -2.5444 7 6 2.5769 -3.8165 -2.9789 8 6 3.1130 -4.1122 -4.1954 9 6 3.5717 -3.1051 -5.0331 10 6 3.4966 -1.7895 -4.6351 11 6 2.9555 -1.4685 -3.3919 12 16 2.7126 0.0766 -2.5831 13 7 2.0196 -0.6925 1.1995 14 6 1.4706 -0.0850 2.4191 15 6 3.4881 -0.7095 1.2350 16 6 3.9534 -1.6291 2.3344 17 8 3.1417 -2.2134 3.0205 18 7 5.2717 -1.8032 2.5545 19 6 5.7240 -2.6968 3.6236 20 6 7.2305 -2.7143 3.6600 21 1 7.7945 -2.1196 2.9568 22 6 7.8886 -3.4904 4.5904 23 7 7.2018 -4.2149 5.4464 24 14 9.7560 -3.5125 4.6349 25 1 10.2871 -2.6176 3.5755 26 1 10.2251 -3.0401 5.9623 27 1 10.2402 -4.8970 4.4027 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2222 -4.6127 -2.3411 32 1 3.1789 -5.1422 -4.5133 33 1 3.9910 -3.3542 -5.9967 34 1 3.8572 -1.0066 -5.2860 35 1 0.3926 -0.2435 2.4504 36 1 1.9310 -0.5454 3.2933 37 1 1.6807 0.9845 2.4186 38 1 3.8706 -1.0645 0.2780 39 1 3.8586 0.2982 1.4230 40 1 5.9208 -1.3363 2.0056 41 1 5.3419 -2.3411 4.5805 42 1 5.3530 -3.7045 3.4363 43 1 7.6649 -4.7606 6.1011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053099474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:43 Heat of formation + Delta-G solvation = 7.622379 kcal Electronic energy + Delta-G solvation = -25641.324409 eV Core-core repulsion = 22005.265555 eV Total energy + Delta-G solvation = -3636.058853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51436 -40.74313 -39.00845 -37.31319 -36.10020 -34.37282 -32.84551 -32.08745 -30.72821 -29.76401 -28.50232 -26.72190 -25.50253 -24.41686 -23.82775 -23.01926 -21.45258 -20.69923 -19.59393 -18.98280 -17.94170 -17.53723 -17.20336 -16.91580 -16.74862 -16.28061 -16.26692 -15.94986 -15.62797 -15.41065 -15.01349 -14.84879 -14.58563 -14.22650 -14.01024 -13.82435 -13.48052 -13.41377 -13.14526 -12.99486 -12.85335 -12.83608 -12.76259 -12.59574 -12.40828 -12.23840 -12.18625 -11.87073 -11.47849 -11.14192 -10.83022 -10.71579 -10.52325 -9.84401 -9.64060 -9.31717 -9.11237 -8.30898 -6.47917 -0.61594 0.16040 0.20458 0.64098 1.36125 1.41317 1.42931 1.56391 1.74349 2.22069 2.41883 2.70254 2.82770 3.00485 3.03785 3.54886 3.77884 3.85534 3.98547 4.05557 4.13808 4.19243 4.22804 4.29377 4.34605 4.48520 4.59907 4.62850 4.78444 4.83416 4.91455 5.07998 5.09459 5.13457 5.21713 5.26021 5.28576 5.41774 5.47060 5.65767 5.76891 5.82110 5.85957 6.00340 6.62890 6.70484 6.89819 7.21501 7.48048 8.81659 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.003177 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.985273 B = 8810.996514 C =10473.367140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 H 0.092 0.908 4 C 0.082 3.918 5 N -0.472 5.472 6 C 0.047 3.953 7 C -0.089 4.089 8 C -0.102 4.102 9 C -0.093 4.093 10 C -0.079 4.079 11 C -0.200 4.200 12 S 0.130 5.870 13 N -0.528 5.528 14 C 0.025 3.975 15 C 0.054 3.946 16 C 0.498 3.502 17 O -0.577 6.577 18 N -0.711 5.711 19 C 0.271 3.729 20 C -0.556 4.556 21 H 0.083 0.917 22 C 0.004 3.996 23 N -0.931 5.931 24 Si 0.986 3.014 25 H -0.253 1.253 26 H -0.277 1.277 27 H -0.279 1.279 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.125 0.875 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.405 0.595 41 H -0.011 1.011 42 H -0.018 1.018 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 12.087 -24.383 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.109 0.891 4 C -0.203 4.203 5 N -0.185 5.185 6 C -0.072 4.072 7 C -0.110 4.110 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.101 4.101 11 C -0.319 4.319 12 S 0.386 5.614 13 N -0.254 5.254 14 C -0.122 4.122 15 C -0.077 4.077 16 C 0.284 3.716 17 O -0.457 6.457 18 N -0.362 5.362 19 C 0.148 3.852 20 C -0.594 4.594 21 H 0.101 0.899 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.809 3.191 25 H -0.177 1.177 26 H -0.202 1.202 27 H -0.204 1.204 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.240 0.760 41 H 0.007 0.993 42 H 0.000 1.000 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.163 11.815 -23.522 28.217 hybrid contribution 1.209 -0.696 0.454 1.467 sum -8.955 11.119 -23.068 27.129 Atomic orbital electron populations 1.21860 0.90484 1.02949 1.04083 1.20524 0.97700 0.94015 0.83315 0.89088 1.26864 1.00417 0.91959 1.01050 1.66130 1.18222 1.13386 1.20778 1.19614 1.01916 0.96305 0.89412 1.20683 0.99915 0.92692 0.97670 1.21136 0.96691 1.01903 0.92514 1.21624 0.97722 0.91134 1.00993 1.20775 0.98233 0.98599 0.92517 1.24213 1.09024 0.96407 1.02224 1.83498 1.60898 1.06363 1.10595 1.61445 1.05683 1.55724 1.02586 1.22520 1.01550 0.97026 0.91115 1.21813 0.90025 0.98746 0.97131 1.21134 0.82313 0.82878 0.85229 1.90614 1.54240 1.50191 1.50690 1.46194 1.06673 1.47163 1.36175 1.18498 0.94571 0.87382 0.84758 1.21636 0.90779 1.28640 1.18361 0.89944 1.26085 1.05077 0.94104 0.94323 1.70151 1.38354 1.28645 1.19770 0.85097 0.77152 0.78289 0.78588 1.17660 1.20204 1.20422 0.89348 0.89846 0.93086 0.85703 0.82064 0.81010 0.82589 0.89661 0.92677 0.93128 0.88977 0.88994 0.75961 0.99285 1.00016 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.81 71.98 0.63 -1.88 16 2 C 0.16 3.44 2.54 44.17 0.11 3.55 16 3 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 4 C 0.08 2.07 4.50 88.68 0.40 2.47 16 5 N -0.47 -14.77 10.48 -182.51 -1.91 -16.68 16 6 C 0.05 1.32 7.00 39.78 0.28 1.60 16 7 C -0.09 -2.16 10.05 22.46 0.23 -1.94 16 8 C -0.10 -1.69 9.94 21.92 0.22 -1.47 16 9 C -0.09 -1.24 10.04 22.26 0.22 -1.02 16 10 C -0.08 -1.27 10.07 22.40 0.23 -1.04 16 11 C -0.20 -4.50 6.56 22.94 0.15 -4.35 16 12 S 0.13 2.51 23.10 -56.49 -1.30 1.21 16 13 N -0.53 -15.68 4.32 -906.06 -3.91 -19.60 16 14 C 0.03 0.68 8.57 127.69 1.09 1.78 16 15 C 0.05 1.69 5.29 85.56 0.45 2.14 16 16 C 0.50 21.58 7.46 87.66 0.65 22.23 16 17 O -0.58 -30.25 14.39 -3.05 -0.04 -30.30 16 18 N -0.71 -32.11 5.55 -466.79 -2.59 -34.70 16 19 C 0.27 15.50 5.43 85.64 0.46 15.96 16 20 C -0.56 -31.19 9.28 25.60 0.24 -30.95 16 21 H 0.08 4.19 7.60 -2.92 -0.02 4.17 16 22 C 0.00 0.21 5.46 84.66 0.46 0.67 16 23 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 24 Si 0.99 43.06 29.54 68.60 2.03 45.08 16 25 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H 0.09 1.33 6.48 -2.39 -0.02 1.32 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.08 2.03 6.60 -2.39 -0.02 2.02 16 36 H 0.05 1.95 5.79 -2.39 -0.01 1.94 16 37 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.09 2.88 6.75 -2.39 -0.02 2.86 16 39 H 0.09 2.24 8.12 -2.39 -0.02 2.22 16 40 H 0.41 15.32 8.32 -92.71 -0.77 14.55 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.84 371.99 -1.35 -82.20 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.27 Total: 22.04 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.83 Total: 7.76 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -8.13 Total: -127.99 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.30 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.30 Total: 1.21 kcal Total: -80.84 -1.35 -82.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053099474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.821 kcal (2) G-P(sol) polarization free energy of solvation -80.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds