Wall clock time and date at job start Tue Mar 31 2020 18:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47153 * 2 1 4 4 C 1.46498 * 120.00345 * 270.00267 * 3 2 1 5 5 C 1.50702 * 109.47129 * 270.00009 * 4 3 2 6 6 H 1.08002 * 119.99942 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99996 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00398 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47142 * 90.00311 * 9 7 5 11 11 H 1.48507 * 109.46849 * 210.00103 * 9 7 5 12 12 H 1.48493 * 109.47234 * 330.00094 * 9 7 5 13 13 C 1.34784 * 120.00162 * 89.99586 * 3 2 1 14 14 O 1.21279 * 120.00046 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99570 * 0.02562 * 13 3 2 16 16 S 1.81000 * 109.47051 * 179.97438 * 15 13 3 17 17 C 1.76200 * 100.00216 * 179.97438 * 16 15 13 18 18 N 1.31045 * 125.07692 * 0.02562 * 17 16 15 19 19 C 1.35877 * 109.62207 * 179.97438 * 18 17 16 20 20 C 1.39714 * 133.37499 * 180.02562 * 19 18 17 21 21 C 1.37695 * 119.77931 * 179.97438 * 20 19 18 22 22 C 1.38695 * 120.49292 * 0.02562 * 21 20 19 23 23 C 1.37978 * 120.43672 * 0.02562 * 22 21 20 24 24 C 1.38654 * 119.85030 * 359.97438 * 23 22 21 25 25 N 1.36633 * 125.07906 * 180.02562 * 17 16 15 26 26 C 1.46502 * 126.38293 * 359.97438 * 25 17 16 27 27 H 1.09005 * 109.47447 * 299.99934 * 1 2 3 28 28 H 1.08999 * 109.47772 * 60.00274 * 1 2 3 29 29 H 1.09004 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47011 * 240.00233 * 2 1 3 31 31 H 1.08996 * 109.47114 * 120.00055 * 2 1 3 32 32 H 1.09005 * 109.46974 * 29.99917 * 4 3 2 33 33 H 1.08999 * 109.47606 * 149.99691 * 4 3 2 34 34 H 0.96991 * 120.00632 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47462 * 59.99312 * 15 13 3 36 36 H 1.09003 * 109.47076 * 299.99271 * 15 13 3 37 37 H 1.07998 * 120.11436 * 359.96102 * 20 19 18 38 38 H 1.07997 * 119.75101 * 179.72338 * 21 20 19 39 39 H 1.08008 * 119.78553 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.07354 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47566 * 270.00581 * 26 25 17 42 42 H 1.08997 * 109.47191 * 30.00788 * 26 25 17 43 43 H 1.08999 * 109.46972 * 150.00378 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1489 2.3897 -2.8779 8 7 3.3487 3.1251 -3.6185 9 14 5.9134 2.0968 -3.4168 10 1 5.9774 0.8756 -4.2592 11 1 6.3919 3.2641 -4.2003 12 1 6.7735 1.9180 -2.2196 13 6 2.2428 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 16 2.3846 2.4147 3.8481 17 6 2.0110 1.3588 5.2083 18 7 1.5755 0.1269 5.1079 19 6 1.3915 -0.3946 6.3490 20 6 0.9527 -1.6376 6.8121 21 6 0.8704 -1.8726 8.1664 22 6 1.2193 -0.8843 9.0747 23 6 1.6535 0.3488 8.6335 24 6 1.7426 0.6030 7.2733 25 7 2.1321 1.7020 6.5252 26 6 2.5886 2.9919 7.0486 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5815 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1384 34 1 3.6747 3.5156 -4.4444 35 1 2.6225 0.4187 2.5299 36 1 0.9442 1.0115 2.5302 37 1 0.6788 -2.4114 6.1104 38 1 0.5268 -2.8321 8.5239 39 1 1.1508 -1.0812 10.1345 40 1 1.9242 1.1140 9.3459 41 1 3.6706 2.9690 7.1787 42 1 2.3237 3.7830 6.3471 43 1 2.1111 3.1836 8.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053159891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:20 Heat of formation + Delta-G solvation = 41.868382 kcal Electronic energy + Delta-G solvation = -25287.770601 eV Core-core repulsion = 21653.196766 eV Total energy + Delta-G solvation = -3634.573835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10542 -39.13202 -37.43977 -35.41976 -34.44581 -32.87865 -30.68928 -30.34867 -30.01761 -29.40573 -27.18482 -26.70330 -23.80676 -23.07100 -22.70270 -22.24920 -21.02354 -18.74547 -17.59741 -17.42917 -16.72014 -16.67827 -16.35816 -16.15413 -15.56658 -14.99393 -14.83812 -14.30110 -14.26394 -14.21942 -13.58180 -13.51186 -13.42963 -13.24720 -13.06150 -12.75241 -12.22032 -12.15930 -12.02650 -11.91226 -11.71869 -11.63915 -11.24186 -10.92931 -10.78031 -10.69998 -10.57880 -10.48192 -10.18254 -10.14722 -9.67696 -9.18037 -9.15925 -8.45734 -8.35531 -7.78701 -7.51583 -6.06812 -4.11691 0.69015 0.97715 1.30442 1.99099 2.46606 2.53967 3.20113 3.29525 3.36311 3.41262 3.67858 3.82682 4.15089 4.41307 4.42944 4.68231 4.77400 4.85688 4.85941 5.05515 5.14529 5.16014 5.22281 5.27936 5.29067 5.29243 5.50130 5.53070 5.62364 5.77001 5.87592 6.04813 6.16739 6.21507 6.28545 6.32851 6.48002 6.63090 6.70858 6.96691 7.37798 7.45255 7.54951 7.88782 8.19060 8.26444 8.78354 8.95871 9.53401 11.01368 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.002586 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.156843 B =10826.209192 C =11384.727435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.522 3.478 14 O -0.530 6.530 15 C -0.137 4.137 16 S 0.070 5.930 17 C 0.253 3.747 18 N -0.499 5.499 19 C 0.059 3.941 20 C -0.067 4.067 21 C -0.128 4.128 22 C -0.108 4.108 23 C -0.109 4.109 24 C 0.049 3.951 25 N -0.480 5.480 26 C 0.077 3.923 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 -7.347 23.968 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.306 3.694 14 O -0.407 6.407 15 C -0.289 4.289 16 S 0.301 5.699 17 C -0.120 4.120 18 N -0.224 5.224 19 C -0.061 4.061 20 C -0.088 4.088 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.061 4.061 25 N -0.172 5.172 26 C -0.065 4.065 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.698 -5.775 22.989 24.378 hybrid contribution 0.654 -1.084 0.394 1.326 sum -5.043 -6.858 23.383 24.885 Atomic orbital electron populations 1.22210 0.96508 1.01681 1.02338 1.21509 0.93763 0.83796 1.03078 1.48182 1.63010 1.13436 1.07175 1.19350 0.96510 0.93693 0.77663 1.21417 0.96809 1.32073 1.06343 0.92374 1.24929 0.97912 0.94854 0.96355 1.69925 1.35720 1.33361 1.14306 0.86490 0.84606 0.77688 0.78624 1.20621 1.21069 1.19841 1.19357 0.79245 0.86685 0.84102 1.90714 1.45932 1.17576 1.86516 1.23886 1.07973 1.02563 0.94453 1.86283 1.81519 1.12278 0.89820 1.26144 1.00824 0.96099 0.88893 1.71042 1.22390 1.05687 1.23232 1.19098 1.03436 0.94988 0.88617 1.20284 0.99027 0.94014 0.95465 1.20877 1.02088 0.99632 0.92296 1.20846 0.99875 0.92461 0.99636 1.19898 1.03947 0.98269 0.90876 1.18947 1.04622 0.88305 0.94194 1.45039 1.55288 1.12472 1.04403 1.22057 1.01169 0.82142 1.01135 0.93038 0.91941 0.91936 0.89575 0.91424 0.94648 0.93682 0.92669 0.86145 0.86228 0.85297 0.85375 0.85390 0.86195 0.90252 0.88878 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.15 0.38 -1.90 16 2 C 0.10 1.64 5.93 -4.05 -0.02 1.61 16 3 N -0.59 -12.18 2.46 -175.07 -0.43 -12.61 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.52 10.70 7.69 -10.98 -0.08 10.62 16 14 O -0.53 -12.95 15.44 5.56 0.09 -12.87 16 15 C -0.14 -2.16 4.19 36.01 0.15 -2.01 16 16 S 0.07 1.06 20.68 -107.50 -2.22 -1.16 16 17 C 0.25 3.65 7.93 -88.45 -0.70 2.95 16 18 N -0.50 -7.66 10.57 -10.91 -0.12 -7.78 16 19 C 0.06 0.82 7.22 -84.69 -0.61 0.21 16 20 C -0.07 -0.75 10.10 -39.23 -0.40 -1.15 16 21 C -0.13 -1.11 10.01 -39.61 -0.40 -1.51 16 22 C -0.11 -0.88 10.03 -39.51 -0.40 -1.28 16 23 C -0.11 -1.03 10.04 -39.52 -0.40 -1.43 16 24 C 0.05 0.61 6.87 -83.84 -0.58 0.04 16 25 N -0.48 -5.88 3.23 -121.71 -0.39 -6.27 16 26 C 0.08 0.62 10.97 59.85 0.66 1.28 16 27 H 0.05 0.67 7.22 -51.93 -0.38 0.30 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.07 0.93 6.44 -51.93 -0.33 0.59 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.12 1.80 7.40 -51.92 -0.38 1.41 16 36 H 0.12 1.71 7.19 -51.92 -0.37 1.34 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -34.51 378.17 -10.52 -45.03 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.02 Total: -1.46 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.84 Total: 0.28 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.20 Total: -52.27 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.22 Total: -1.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.51 -10.52 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053159891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.903 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds