Wall clock time and date at job start Tue Mar 31 2020 18:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47153 * 2 1 4 4 C 1.46498 * 120.00345 * 270.00267 * 3 2 1 5 5 C 1.50702 * 109.47129 * 270.00009 * 4 3 2 6 6 H 1.08002 * 119.99942 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99996 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00398 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47142 * 90.00311 * 9 7 5 11 11 H 1.48507 * 109.46849 * 210.00103 * 9 7 5 12 12 H 1.48493 * 109.47234 * 330.00094 * 9 7 5 13 13 C 1.34784 * 120.00162 * 89.99586 * 3 2 1 14 14 O 1.21279 * 120.00046 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99570 * 0.02562 * 13 3 2 16 16 S 1.81000 * 109.47051 * 179.97438 * 15 13 3 17 17 C 1.76200 * 100.00216 * 179.97438 * 16 15 13 18 18 N 1.31045 * 125.07692 * 0.02562 * 17 16 15 19 19 C 1.35877 * 109.62207 * 179.97438 * 18 17 16 20 20 C 1.39714 * 133.37499 * 180.02562 * 19 18 17 21 21 C 1.37695 * 119.77931 * 179.97438 * 20 19 18 22 22 C 1.38695 * 120.49292 * 0.02562 * 21 20 19 23 23 C 1.37978 * 120.43672 * 0.02562 * 22 21 20 24 24 C 1.38654 * 119.85030 * 359.97438 * 23 22 21 25 25 N 1.36633 * 125.07906 * 180.02562 * 17 16 15 26 26 C 1.46502 * 126.38293 * 359.97438 * 25 17 16 27 27 H 1.09005 * 109.47447 * 299.99934 * 1 2 3 28 28 H 1.08999 * 109.47772 * 60.00274 * 1 2 3 29 29 H 1.09004 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47011 * 240.00233 * 2 1 3 31 31 H 1.08996 * 109.47114 * 120.00055 * 2 1 3 32 32 H 1.09005 * 109.46974 * 29.99917 * 4 3 2 33 33 H 1.08999 * 109.47606 * 149.99691 * 4 3 2 34 34 H 0.96991 * 120.00632 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47462 * 59.99312 * 15 13 3 36 36 H 1.09003 * 109.47076 * 299.99271 * 15 13 3 37 37 H 1.07998 * 120.11436 * 359.96102 * 20 19 18 38 38 H 1.07997 * 119.75101 * 179.72338 * 21 20 19 39 39 H 1.08008 * 119.78553 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.07354 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47566 * 270.00581 * 26 25 17 42 42 H 1.08997 * 109.47191 * 30.00788 * 26 25 17 43 43 H 1.08999 * 109.46972 * 150.00378 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1489 2.3897 -2.8779 8 7 3.3487 3.1251 -3.6185 9 14 5.9134 2.0968 -3.4168 10 1 5.9774 0.8756 -4.2592 11 1 6.3919 3.2641 -4.2003 12 1 6.7735 1.9180 -2.2196 13 6 2.2428 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 16 2.3846 2.4147 3.8481 17 6 2.0110 1.3588 5.2083 18 7 1.5755 0.1269 5.1079 19 6 1.3915 -0.3946 6.3490 20 6 0.9527 -1.6376 6.8121 21 6 0.8704 -1.8726 8.1664 22 6 1.2193 -0.8843 9.0747 23 6 1.6535 0.3488 8.6335 24 6 1.7426 0.6030 7.2733 25 7 2.1321 1.7020 6.5252 26 6 2.5886 2.9919 7.0486 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5815 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1384 34 1 3.6747 3.5156 -4.4444 35 1 2.6225 0.4187 2.5299 36 1 0.9442 1.0115 2.5302 37 1 0.6788 -2.4114 6.1104 38 1 0.5268 -2.8321 8.5239 39 1 1.1508 -1.0812 10.1345 40 1 1.9242 1.1140 9.3459 41 1 3.6706 2.9690 7.1787 42 1 2.3237 3.7830 6.3471 43 1 2.1111 3.1836 8.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053159891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:19 Heat of formation + Delta-G solvation = 22.025614 kcal Electronic energy + Delta-G solvation = -25288.631048 eV Core-core repulsion = 21653.196766 eV Total energy + Delta-G solvation = -3635.434282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.97056 -40.80660 -38.17880 -37.09537 -35.30054 -34.95503 -31.98224 -31.41828 -31.29527 -30.33500 -28.62249 -27.90647 -25.03337 -24.59073 -24.14448 -23.09869 -21.85522 -20.25376 -18.76815 -18.58143 -18.21303 -18.08695 -17.57773 -17.17365 -17.01697 -16.56073 -16.18022 -15.70747 -15.05418 -14.96992 -14.89973 -14.80127 -14.59258 -14.38180 -14.24752 -13.83278 -13.67478 -13.56091 -13.27938 -13.07751 -12.86006 -12.76322 -12.70406 -12.53962 -12.44564 -12.19168 -11.98457 -11.78004 -11.72951 -11.39984 -11.10093 -10.87001 -10.64448 -10.10353 -9.55349 -9.12868 -8.57389 -8.23479 -6.37838 -0.14942 -0.12173 0.54684 0.81837 1.36641 1.39399 1.49385 1.56311 1.59351 1.73145 2.21420 2.40830 2.89819 3.06543 3.31264 3.43855 3.76223 3.89476 3.98341 4.04735 4.13909 4.26436 4.27803 4.38705 4.39587 4.48525 4.56484 4.58895 4.62657 4.82698 4.88990 4.93916 5.02525 5.15980 5.19288 5.35169 5.40741 5.53634 5.56219 5.58351 5.78363 5.88920 5.92976 6.03741 6.56875 6.62247 6.71221 7.16366 7.34914 8.83921 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.002586 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.156843 B =10826.209192 C =11384.727435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.592 5.592 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.517 3.483 14 O -0.578 6.578 15 C -0.119 4.119 16 S 0.057 5.943 17 C 0.235 3.765 18 N -0.521 5.521 19 C 0.018 3.982 20 C -0.086 4.086 21 C -0.120 4.120 22 C -0.098 4.098 23 C -0.114 4.114 24 C 0.035 3.965 25 N -0.478 5.478 26 C 0.068 3.932 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 -9.426 26.960 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.322 5.322 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.303 3.697 14 O -0.459 6.459 15 C -0.270 4.270 16 S 0.288 5.712 17 C -0.138 4.138 18 N -0.246 5.246 19 C -0.102 4.102 20 C -0.107 4.107 21 C -0.140 4.140 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.076 4.076 25 N -0.170 5.170 26 C -0.072 4.072 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.583 -7.891 26.009 27.747 hybrid contribution 0.542 -0.514 -0.358 0.828 sum -5.041 -8.405 25.650 27.459 Atomic orbital electron populations 1.22145 0.94386 1.03650 1.01730 1.21813 0.95488 0.81088 1.04146 1.48175 1.63071 1.15145 1.05840 1.18805 0.95556 0.91724 0.79758 1.21681 0.97765 1.32154 1.06602 0.92835 1.25829 1.02331 0.94431 0.96394 1.70041 1.37740 1.34113 1.14767 0.85429 0.79067 0.78196 0.78214 1.18859 1.20593 1.19808 1.20041 0.78010 0.86259 0.85389 1.90682 1.47942 1.19811 1.87449 1.23623 1.09175 1.02181 0.92070 1.86251 1.82299 1.12583 0.90115 1.25811 1.02499 0.96070 0.89449 1.70908 1.22771 1.06225 1.24744 1.19566 1.05441 0.96637 0.88552 1.20555 0.99765 0.93437 0.96929 1.21310 1.00389 1.01072 0.91263 1.21368 0.97495 0.91454 1.01440 1.20324 1.03534 0.99638 0.89977 1.19354 1.04987 0.87956 0.95256 1.45242 1.54588 1.13555 1.03635 1.22352 1.02140 0.80508 1.02227 0.92554 0.93643 0.88603 0.90162 0.88646 0.95399 0.97976 0.92352 0.85017 0.84535 0.84939 0.82279 0.81701 0.83536 0.89163 0.89046 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.46 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.59 -25.34 2.46 -826.17 -2.03 -27.36 16 4 C 0.26 14.15 5.16 85.63 0.44 14.59 16 5 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 9 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.52 21.90 7.69 87.66 0.67 22.57 16 14 O -0.58 -29.73 15.44 -3.03 -0.05 -29.78 16 15 C -0.12 -3.79 4.19 71.24 0.30 -3.50 16 16 S 0.06 1.77 20.68 -56.49 -1.17 0.60 16 17 C 0.24 6.79 7.93 179.59 1.42 8.21 16 18 N -0.52 -15.97 10.57 -188.42 -1.99 -17.96 16 19 C 0.02 0.50 7.22 39.42 0.28 0.78 16 20 C -0.09 -1.80 10.10 22.50 0.23 -1.57 16 21 C -0.12 -1.68 10.01 22.25 0.22 -1.46 16 22 C -0.10 -1.19 10.03 22.32 0.22 -0.97 16 23 C -0.11 -1.79 10.04 22.31 0.22 -1.57 16 24 C 0.03 0.81 6.87 38.72 0.27 1.07 16 25 N -0.48 -11.34 3.23 -538.96 -1.74 -13.08 16 26 C 0.07 1.01 10.97 127.77 1.40 2.41 16 27 H 0.06 1.41 7.22 -2.38 -0.02 1.40 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 31 H 0.10 2.48 6.44 -2.39 -0.02 2.47 16 32 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 33 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.13 3.89 7.40 -2.40 -0.02 3.87 16 36 H 0.14 3.86 7.19 -2.39 -0.02 3.84 16 37 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 39 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.38 7.68 -2.39 -0.02 1.36 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.78 378.17 3.99 -74.79 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.01 Total: 10.84 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 7.64 Total: 10.58 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -5.48 Total: -114.14 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.17 Total: 0.60 kcal Total: -78.78 3.99 -74.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053159891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.820 kcal (2) G-P(sol) polarization free energy of solvation -78.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds