Wall clock time and date at job start Tue Mar 31 2020 18:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47180 * 2 1 4 4 C 1.46506 * 120.00096 * 270.00088 * 3 2 1 5 5 C 1.50701 * 109.47157 * 269.99964 * 4 3 2 6 6 H 1.08000 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99555 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99783 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00505 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47054 * 89.99556 * 9 7 5 11 11 H 1.48500 * 109.47224 * 209.99783 * 9 7 5 12 12 H 1.48502 * 109.46890 * 330.00159 * 9 7 5 13 13 C 1.34776 * 119.99871 * 90.00365 * 3 2 1 14 14 O 1.21288 * 119.99759 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00197 * 359.97438 * 13 3 2 16 16 S 1.80998 * 109.47126 * 180.02562 * 15 13 3 17 17 C 1.76201 * 99.99757 * 180.02562 * 16 15 13 18 18 N 1.32465 * 119.83585 * 359.97438 * 17 16 15 19 19 C 1.31854 * 121.77429 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.38295 * 180.02562 * 19 18 17 21 21 C 1.38355 * 121.23309 * 0.02562 * 19 18 17 22 22 C 1.38386 * 119.51997 * 359.97438 * 21 19 18 23 23 C 1.50696 * 120.81456 * 180.02562 * 22 21 19 24 24 C 1.39961 * 118.36658 * 0.02562 * 22 21 19 25 25 C 1.43203 * 120.61039 * 180.02562 * 24 22 21 26 26 N 8.27583 * 100.37547 * 58.84059 * 2 1 3 27 27 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46870 * 300.00006 * 1 2 3 29 29 H 1.08999 * 109.47494 * 60.00052 * 1 2 3 30 30 H 1.09006 * 109.46926 * 240.00506 * 2 1 3 31 31 H 1.08996 * 109.47416 * 120.00474 * 2 1 3 32 32 H 1.08996 * 109.46840 * 30.00569 * 4 3 2 33 33 H 1.09003 * 109.46868 * 149.99723 * 4 3 2 34 34 H 0.97001 * 120.00030 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46552 * 60.00533 * 15 13 3 36 36 H 1.08998 * 109.47145 * 300.00237 * 15 13 3 37 37 H 1.09000 * 109.47142 * 89.99980 * 20 19 18 38 38 H 1.09003 * 109.47224 * 210.00420 * 20 19 18 39 39 H 1.08999 * 109.47501 * 330.00476 * 20 19 18 40 40 H 1.07993 * 120.24318 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.47138 * 90.00786 * 23 22 21 42 42 H 1.09007 * 109.46815 * 210.00708 * 23 22 21 43 43 H 1.08996 * 109.47386 * 330.00164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1489 2.3897 -2.8780 8 7 5.3911 2.1835 -3.2575 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5081 11 1 3.4055 3.3121 -5.3560 12 1 1.6129 2.9693 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 16 2.3829 2.4154 3.8481 17 6 2.0097 1.3592 5.2082 18 7 1.5744 0.1279 4.9864 19 6 1.2843 -0.6946 5.9753 20 6 0.7934 -2.0843 5.6613 21 6 1.4221 -0.3055 7.2959 22 6 1.8731 0.9698 7.5875 23 6 2.0346 1.4239 9.0153 24 6 2.1756 1.8276 6.5237 25 6 2.6464 3.1573 6.7704 26 7 3.0204 4.2121 6.9661 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1384 34 1 5.7170 2.5734 -4.0838 35 1 2.6213 0.4186 2.5302 36 1 0.9432 1.0125 2.5299 37 1 1.6441 -2.7616 5.5852 38 1 0.1290 -2.4233 6.4561 39 1 0.2521 -2.0734 4.7152 40 1 1.1803 -0.9924 8.0933 41 1 3.0425 1.1910 9.3589 42 1 1.8698 2.4998 9.0752 43 1 1.3083 0.9095 9.6445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053287813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:16 Heat of formation + Delta-G solvation = 24.817882 kcal Electronic energy + Delta-G solvation = -25286.530152 eV Core-core repulsion = 21651.216951 eV Total energy + Delta-G solvation = -3635.313200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72944 -39.23897 -36.90473 -35.53276 -34.51367 -33.17903 -32.79750 -30.62958 -30.01188 -28.93796 -27.96833 -27.23953 -24.42521 -23.05384 -22.37584 -22.06474 -19.27122 -18.61150 -17.65197 -17.18458 -16.94182 -16.65541 -15.59859 -15.46086 -15.04520 -14.94050 -14.30248 -14.05534 -13.96393 -13.61821 -13.55313 -13.48607 -13.33222 -13.32201 -13.11047 -12.83290 -12.80132 -12.66073 -12.57723 -12.35825 -12.17621 -12.02303 -11.83299 -11.49057 -11.00845 -10.81211 -10.61782 -10.47239 -10.18764 -10.13274 -9.99875 -9.66440 -9.58199 -9.25097 -8.60649 -7.87190 -7.71167 -6.10431 -4.09795 0.19959 0.69539 1.22583 1.96101 2.50923 2.67113 3.13653 3.28081 3.33861 3.36291 3.43576 3.53534 3.71251 4.02157 4.08278 4.37978 4.45618 4.66420 4.78340 4.89122 4.96417 5.06344 5.11153 5.13808 5.19377 5.22046 5.22998 5.39538 5.45826 5.50432 5.51880 5.62043 5.66380 5.70761 5.93713 6.09676 6.09849 6.35492 6.63099 6.88595 7.23012 7.24466 7.38534 7.57344 8.08378 8.42656 8.76203 8.93020 9.49167 11.02872 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002931 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.695610 B = 9549.294546 C =10617.541170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.584 5.584 4 C 0.217 3.783 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.521 3.479 14 O -0.526 6.526 15 C -0.139 4.139 16 S 0.039 5.961 17 C 0.157 3.843 18 N -0.494 5.494 19 C 0.179 3.821 20 C -0.109 4.109 21 C -0.192 4.192 22 C 0.028 3.972 23 C -0.125 4.125 24 C -0.082 4.082 25 C 0.255 3.745 26 N -0.397 5.397 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.145 0.855 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 -11.830 22.486 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.315 5.315 4 C 0.097 3.903 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.306 3.694 14 O -0.404 6.404 15 C -0.290 4.290 16 S 0.284 5.716 17 C -0.094 4.094 18 N -0.208 5.208 19 C 0.037 3.963 20 C -0.167 4.167 21 C -0.216 4.216 22 C 0.017 3.983 23 C -0.181 4.181 24 C -0.095 4.095 25 C -0.061 4.061 26 N -0.072 5.072 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.163 0.837 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.818 -8.603 21.533 26.026 hybrid contribution -0.902 -1.069 0.055 1.400 sum -12.720 -9.673 21.588 26.859 Atomic orbital electron populations 1.22225 0.96543 1.01756 1.02263 1.21519 0.93579 0.83509 1.03434 1.47846 1.63621 1.13539 1.06532 1.19711 0.97534 0.93426 0.79668 1.21304 0.95235 1.33152 1.07216 0.90685 1.24849 0.95000 0.95742 0.97340 1.69895 1.15104 1.44897 1.23534 0.86860 0.81421 0.81678 0.79792 1.19855 1.21022 1.19050 1.19474 0.78965 0.86739 0.84265 1.90734 1.45433 1.17656 1.86535 1.23863 1.07767 1.02699 0.94711 1.86868 1.78705 1.13869 0.92207 1.23872 0.94626 0.94834 0.96112 1.68111 1.15368 1.01990 1.35368 1.21544 0.90290 0.95655 0.88812 1.20829 1.01948 0.90125 1.03754 1.21655 1.05922 0.96359 0.97686 1.20247 0.90651 0.92325 0.95042 1.20957 1.03750 1.02569 0.90833 1.16268 1.11028 0.89180 0.93073 1.25120 0.94133 0.92421 0.94414 1.81257 1.08433 1.10807 1.06747 0.91774 0.92975 0.92142 0.89413 0.91132 0.94943 0.94455 0.92508 0.86040 0.86231 0.89588 0.90166 0.89872 0.83706 0.89454 0.90836 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.15 0.38 -1.64 16 2 C 0.10 1.54 5.93 -4.05 -0.02 1.51 16 3 N -0.58 -11.71 2.46 -175.06 -0.43 -12.14 16 4 C 0.22 5.24 4.23 -5.19 -0.02 5.21 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.52 10.55 7.69 -10.98 -0.08 10.47 16 14 O -0.53 -13.01 15.44 5.55 0.09 -12.93 16 15 C -0.14 -2.10 3.87 36.01 0.14 -1.96 16 16 S 0.04 0.61 20.19 -107.50 -2.17 -1.56 16 17 C 0.16 1.98 7.01 -16.38 -0.11 1.87 16 18 N -0.49 -5.47 9.03 -7.93 -0.07 -5.54 16 19 C 0.18 1.44 6.78 -82.54 -0.56 0.89 16 20 C -0.11 -0.53 10.16 36.00 0.37 -0.17 16 21 C -0.19 -1.26 9.41 -39.48 -0.37 -1.63 16 22 C 0.03 0.23 5.95 -103.92 -0.62 -0.39 16 23 C -0.12 -0.68 9.68 36.00 0.35 -0.33 16 24 C -0.08 -0.93 5.77 -106.43 -0.61 -1.54 16 25 C 0.26 3.36 12.92 -22.47 -0.29 3.07 16 26 N -0.40 -5.97 18.54 41.84 0.78 -5.19 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.12 1.68 7.38 -51.92 -0.38 1.30 16 36 H 0.12 1.53 7.17 -51.92 -0.37 1.15 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.48 7.19 -51.93 -0.37 0.11 16 43 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -35.87 381.65 -7.81 -43.68 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.95 Total: -3.96 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.91 Total: 1.89 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 1.05 Total: -49.76 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.17 Total: -1.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.87 -7.81 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053287813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.495 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds