Wall clock time and date at job start Tue Mar 31 2020 18:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47180 * 2 1 4 4 C 1.46506 * 120.00096 * 270.00088 * 3 2 1 5 5 C 1.50701 * 109.47157 * 269.99964 * 4 3 2 6 6 H 1.08000 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99555 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99783 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00505 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47054 * 89.99556 * 9 7 5 11 11 H 1.48500 * 109.47224 * 209.99783 * 9 7 5 12 12 H 1.48502 * 109.46890 * 330.00159 * 9 7 5 13 13 C 1.34776 * 119.99871 * 90.00365 * 3 2 1 14 14 O 1.21288 * 119.99759 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00197 * 359.97438 * 13 3 2 16 16 S 1.80998 * 109.47126 * 180.02562 * 15 13 3 17 17 C 1.76201 * 99.99757 * 180.02562 * 16 15 13 18 18 N 1.32465 * 119.83585 * 359.97438 * 17 16 15 19 19 C 1.31854 * 121.77429 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.38295 * 180.02562 * 19 18 17 21 21 C 1.38355 * 121.23309 * 0.02562 * 19 18 17 22 22 C 1.38386 * 119.51997 * 359.97438 * 21 19 18 23 23 C 1.50696 * 120.81456 * 180.02562 * 22 21 19 24 24 C 1.39961 * 118.36658 * 0.02562 * 22 21 19 25 25 C 1.43203 * 120.61039 * 180.02562 * 24 22 21 26 26 N 8.27583 * 100.37547 * 58.84059 * 2 1 3 27 27 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46870 * 300.00006 * 1 2 3 29 29 H 1.08999 * 109.47494 * 60.00052 * 1 2 3 30 30 H 1.09006 * 109.46926 * 240.00506 * 2 1 3 31 31 H 1.08996 * 109.47416 * 120.00474 * 2 1 3 32 32 H 1.08996 * 109.46840 * 30.00569 * 4 3 2 33 33 H 1.09003 * 109.46868 * 149.99723 * 4 3 2 34 34 H 0.97001 * 120.00030 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46552 * 60.00533 * 15 13 3 36 36 H 1.08998 * 109.47145 * 300.00237 * 15 13 3 37 37 H 1.09000 * 109.47142 * 89.99980 * 20 19 18 38 38 H 1.09003 * 109.47224 * 210.00420 * 20 19 18 39 39 H 1.08999 * 109.47501 * 330.00476 * 20 19 18 40 40 H 1.07993 * 120.24318 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.47138 * 90.00786 * 23 22 21 42 42 H 1.09007 * 109.46815 * 210.00708 * 23 22 21 43 43 H 1.08996 * 109.47386 * 330.00164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1489 2.3897 -2.8780 8 7 5.3911 2.1835 -3.2575 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5081 11 1 3.4055 3.3121 -5.3560 12 1 1.6129 2.9693 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 16 2.3829 2.4154 3.8481 17 6 2.0097 1.3592 5.2082 18 7 1.5744 0.1279 4.9864 19 6 1.2843 -0.6946 5.9753 20 6 0.7934 -2.0843 5.6613 21 6 1.4221 -0.3055 7.2959 22 6 1.8731 0.9698 7.5875 23 6 2.0346 1.4239 9.0153 24 6 2.1756 1.8276 6.5237 25 6 2.6464 3.1573 6.7704 26 7 3.0204 4.2121 6.9661 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1384 34 1 5.7170 2.5734 -4.0838 35 1 2.6213 0.4186 2.5302 36 1 0.9432 1.0125 2.5299 37 1 1.6441 -2.7616 5.5852 38 1 0.1290 -2.4233 6.4561 39 1 0.2521 -2.0734 4.7152 40 1 1.1803 -0.9924 8.0933 41 1 3.0425 1.1910 9.3589 42 1 1.8698 2.4998 9.0752 43 1 1.3083 0.9095 9.6445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053287813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:15 Heat of formation + Delta-G solvation = 1.398494 kcal Electronic energy + Delta-G solvation = -25287.545692 eV Core-core repulsion = 21651.216951 eV Total energy + Delta-G solvation = -3636.328741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45495 -40.84796 -37.90593 -37.13594 -35.20564 -34.91411 -33.84356 -32.26197 -31.26835 -29.63856 -29.02234 -28.41047 -25.27963 -24.49595 -24.08515 -22.69189 -20.39141 -19.83607 -19.14540 -18.57142 -18.15578 -18.08519 -17.05021 -16.75396 -16.17475 -15.92584 -15.67578 -15.18098 -14.94166 -14.74870 -14.68357 -14.57641 -14.36781 -14.21163 -14.07514 -13.95958 -13.74440 -13.67589 -13.58665 -13.39482 -13.21211 -13.10926 -13.03813 -12.63713 -12.58794 -12.43115 -12.06685 -11.95491 -11.76528 -11.64525 -10.94861 -10.85226 -10.78101 -10.72348 -10.45438 -9.53561 -8.82859 -8.36108 -6.41500 -0.57454 0.01725 0.14216 0.88398 1.30649 1.35515 1.43193 1.50065 1.56925 1.80429 2.20347 2.28997 2.62715 2.67223 2.98257 3.30378 3.47839 3.54128 3.77755 3.94774 4.06201 4.09717 4.26869 4.31973 4.40085 4.55101 4.60034 4.60997 4.71143 4.75949 4.85572 4.92624 4.97722 5.00802 5.01358 5.07095 5.13384 5.28281 5.38305 5.43908 5.56631 5.59287 6.19357 6.28491 6.52248 6.60169 6.63268 7.12676 7.26517 8.80878 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002931 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.695610 B = 9549.294546 C =10617.541170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.095 3.905 3 N -0.590 5.590 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.235 1.235 13 C 0.511 3.489 14 O -0.582 6.582 15 C -0.107 4.107 16 S -0.041 6.041 17 C 0.155 3.845 18 N -0.507 5.507 19 C 0.173 3.827 20 C -0.108 4.108 21 C -0.169 4.169 22 C 0.032 3.968 23 C -0.124 4.124 24 C -0.100 4.100 25 C 0.273 3.727 26 N -0.445 5.445 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.269 0.731 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.192 0.808 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.299 -15.048 24.531 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.320 5.320 4 C 0.104 3.896 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.158 1.158 13 C 0.298 3.702 14 O -0.463 6.463 15 C -0.258 4.258 16 S 0.202 5.798 17 C -0.096 4.096 18 N -0.222 5.222 19 C 0.031 3.969 20 C -0.165 4.165 21 C -0.192 4.192 22 C 0.021 3.979 23 C -0.180 4.180 24 C -0.114 4.114 25 C -0.043 4.043 26 N -0.121 5.121 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.209 0.791 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.080 -11.897 23.610 30.436 hybrid contribution 0.132 -0.282 -0.399 0.506 sum -14.949 -12.179 23.211 30.175 Atomic orbital electron populations 1.22153 0.93626 1.03951 1.02057 1.21877 0.95892 0.80581 1.04326 1.47959 1.63436 1.15405 1.05242 1.19364 0.95064 0.93026 0.82186 1.21540 0.97006 1.32263 1.06731 0.95225 1.25841 0.96711 0.97119 0.98968 1.70048 1.17405 1.46540 1.24478 0.85740 0.80623 0.78889 0.77862 1.20509 1.19838 1.15812 1.20314 0.77688 0.86358 0.85873 1.90700 1.47739 1.20275 1.87580 1.23576 1.09478 1.01557 0.91199 1.87116 1.80805 1.16841 0.95033 1.23302 0.96554 0.95285 0.94490 1.68054 1.15747 1.01492 1.36911 1.22252 0.89198 0.96437 0.89000 1.20974 1.02730 0.87981 1.04772 1.22175 1.02798 0.95890 0.98290 1.20622 0.89556 0.92381 0.95297 1.21064 1.05397 1.02009 0.89565 1.16486 1.12417 0.88822 0.93684 1.25520 0.93005 0.92665 0.93072 1.81246 1.10283 1.12166 1.08395 0.88292 0.92246 0.93305 0.90349 0.88515 0.92693 0.96421 0.92233 0.84739 0.83496 0.88576 0.87090 0.90288 0.79083 0.88391 0.92371 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.60 16 2 C 0.10 2.68 5.93 86.38 0.51 3.19 16 3 N -0.59 -23.87 2.46 -826.15 -2.03 -25.90 16 4 C 0.23 11.06 4.23 85.63 0.36 11.42 16 5 C -0.54 -31.89 9.94 25.60 0.25 -31.64 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.70 5.47 84.65 0.46 1.16 16 8 N -0.94 -60.47 13.96 21.45 0.30 -60.17 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 13 C 0.51 21.30 7.69 87.66 0.67 21.97 16 14 O -0.58 -30.45 15.44 -3.05 -0.05 -30.50 16 15 C -0.11 -3.23 3.87 71.24 0.28 -2.95 16 16 S -0.04 -1.36 20.19 -56.49 -1.14 -2.50 16 17 C 0.16 3.83 7.01 85.18 0.60 4.43 16 18 N -0.51 -10.09 9.03 -179.00 -1.62 -11.70 16 19 C 0.17 2.08 6.78 42.58 0.29 2.37 16 20 C -0.11 -0.52 10.16 71.23 0.72 0.21 16 21 C -0.17 -1.37 9.41 22.33 0.21 -1.16 16 22 C 0.03 0.42 5.95 -19.41 -0.12 0.30 16 23 C -0.12 -0.95 9.68 71.23 0.69 -0.26 16 24 C -0.10 -2.20 5.77 -21.03 -0.12 -2.32 16 25 C 0.27 7.43 12.92 88.33 1.14 8.57 16 26 N -0.44 -14.15 18.54 19.01 0.35 -13.79 16 27 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 2.36 8.07 -2.38 -0.02 2.34 16 31 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 32 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 33 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 34 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 35 H 0.13 3.63 7.38 -2.39 -0.02 3.61 16 36 H 0.15 3.52 7.17 -2.40 -0.02 3.50 16 37 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.11 -0.10 8.07 -2.39 -0.02 -0.12 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 41 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.67 7.19 -2.38 -0.02 0.65 16 43 H 0.12 0.15 8.10 -2.39 -0.02 0.13 16 Total: -1.00 -86.51 381.65 5.37 -81.14 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.97 Total: 3.89 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.69 Total: 12.69 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -2.99 Total: -111.56 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.14 Total: -2.50 kcal Total: -86.51 5.37 -81.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053287813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.539 kcal (2) G-P(sol) polarization free energy of solvation -86.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds