Wall clock time and date at job start Tue Mar 31 2020 18:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47225 * 2 1 4 4 C 1.46508 * 119.99531 * 269.99699 * 3 2 1 5 5 C 1.50694 * 109.47009 * 270.00085 * 4 3 2 6 6 H 1.08003 * 120.00223 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99794 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99648 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46640 * 119.99964 * 9 7 5 12 12 H 1.48497 * 109.47285 * 239.99803 * 9 7 5 13 13 C 1.34767 * 120.00475 * 89.99662 * 3 2 1 14 14 O 1.21285 * 120.00622 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00135 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47765 * 179.97438 * 15 13 3 17 17 C 1.35850 * 119.68564 * 270.00590 * 16 15 13 18 18 N 1.29846 * 123.35247 * 179.97438 * 17 16 15 19 19 C 1.35662 * 121.58753 * 359.97438 * 18 17 16 20 20 C 1.39544 * 121.68969 * 179.97438 * 19 18 17 21 21 C 1.37983 * 119.52861 * 180.02562 * 20 19 18 22 22 F 1.35093 * 119.62583 * 180.02562 * 21 20 19 23 23 C 1.39148 * 120.75091 * 0.02562 * 21 20 19 24 24 C 1.36675 * 120.68316 * 0.02562 * 23 21 20 25 25 C 1.39385 * 119.66583 * 359.97438 * 24 23 21 26 26 C 1.35344 * 119.68056 * 89.99575 * 16 15 13 27 27 O 1.21733 * 121.28910 * 0.27832 * 26 16 15 28 28 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46965 * 300.00678 * 1 2 3 30 30 H 1.08999 * 109.46778 * 60.00246 * 1 2 3 31 31 H 1.08997 * 109.46965 * 239.99322 * 2 1 3 32 32 H 1.08999 * 109.46778 * 119.99754 * 2 1 3 33 33 H 1.08999 * 109.46697 * 30.00335 * 4 3 2 34 34 H 1.09001 * 109.46425 * 150.00084 * 4 3 2 35 35 H 0.97005 * 119.99241 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47164 * 59.99693 * 15 13 3 37 37 H 1.09005 * 109.47145 * 300.00307 * 15 13 3 38 38 H 1.08000 * 118.32691 * 359.96445 * 17 16 15 39 39 H 1.08005 * 120.23471 * 0.05148 * 20 19 18 40 40 H 1.08001 * 119.65763 * 179.97438 * 23 21 20 41 41 H 1.08004 * 120.16757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2689 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1495 2.3902 -2.8776 8 7 3.3498 3.1271 -3.6172 9 14 5.9140 2.0971 -3.4164 10 1 6.6012 1.2410 -2.4164 11 1 5.9218 1.4185 -4.7372 12 1 6.6212 3.3984 -3.5243 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1599 1.1671 15 6 1.9924 1.3061 2.4723 16 7 2.3101 2.2036 3.5858 17 6 3.5688 2.2223 4.0966 18 7 3.9282 2.9888 5.0812 19 6 3.0539 3.8384 5.6762 20 6 3.4378 4.6626 6.7348 21 6 2.5114 5.5098 7.3076 22 9 2.8810 6.3089 8.3321 23 6 1.2008 5.5504 6.8419 24 6 0.8033 4.7510 5.8070 25 6 1.7203 3.8865 5.2115 26 6 1.3469 3.0061 4.0956 27 8 0.2140 2.9955 3.6502 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6875 -2.0284 34 1 2.0957 3.1409 -1.1385 35 1 3.6759 3.5174 -4.4432 36 1 2.6229 0.4188 2.5299 37 1 0.9445 1.0115 2.5302 38 1 4.3082 1.5662 3.6617 39 1 4.4529 4.6379 7.1028 40 1 0.4901 6.2199 7.3035 41 1 -0.2162 4.7889 5.4524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053637073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:52 Heat of formation + Delta-G solvation = -56.510316 kcal Electronic energy + Delta-G solvation = -28161.231597 eV Core-core repulsion = 23956.178565 eV Total energy + Delta-G solvation = -4205.053032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.26081 -41.80990 -39.41411 -38.31678 -37.52823 -35.51023 -34.35966 -32.88190 -31.46018 -30.29107 -30.23880 -28.96012 -26.71132 -25.12809 -24.15129 -23.15140 -22.56797 -22.42289 -19.52296 -19.14822 -18.71608 -17.57633 -17.05664 -16.65332 -16.48625 -16.21524 -15.99091 -15.78795 -15.41294 -15.08927 -14.71448 -14.36019 -14.28084 -14.09867 -13.59259 -13.55507 -13.34070 -13.29805 -13.17774 -12.78735 -12.30197 -12.10102 -12.03540 -11.91528 -11.68313 -11.29836 -10.98783 -10.84444 -10.65511 -10.47292 -10.37572 -10.22425 -10.17952 -9.72325 -9.27117 -9.09290 -8.51468 -8.33080 -7.85053 -6.12141 -4.17711 0.23576 0.48383 2.01003 2.17355 2.48697 3.09320 3.24659 3.32842 3.35170 3.57616 3.61679 3.80804 3.95262 4.16728 4.37125 4.38742 4.60075 4.61030 4.75830 4.78303 4.99039 5.06790 5.11327 5.22567 5.23271 5.49448 5.53359 5.63375 5.66329 5.77066 5.80823 5.91857 6.06582 6.12658 6.34757 6.40595 6.48032 6.90715 7.32936 7.38393 7.55456 7.65760 7.82858 8.12757 8.19692 8.72514 8.89292 9.47642 10.96087 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.003031 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.352681 B = 9237.175986 C =10174.925337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.529 6.529 15 C 0.070 3.930 16 N -0.527 5.527 17 C 0.406 3.594 18 N -0.533 5.533 19 C 0.191 3.809 20 C -0.153 4.153 21 C 0.146 3.854 22 F -0.132 7.132 23 C -0.179 4.179 24 C -0.007 4.007 25 C -0.208 4.208 26 C 0.556 3.444 27 O -0.504 6.504 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.204 0.796 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -5.062 19.292 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.276 3.724 14 O -0.406 6.406 15 C -0.056 4.056 16 N -0.247 5.247 17 C 0.120 3.880 18 N -0.253 5.253 19 C 0.080 3.920 20 C -0.173 4.173 21 C 0.125 3.875 22 F -0.110 7.110 23 C -0.199 4.199 24 C -0.027 4.027 25 C -0.214 4.214 26 C 0.350 3.650 27 O -0.377 6.377 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.220 0.780 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.868 -4.192 19.262 20.089 hybrid contribution 0.337 0.030 -0.713 0.789 sum -3.531 -4.161 18.549 19.335 Atomic orbital electron populations 1.22246 0.96442 1.01673 1.02708 1.21506 0.93826 0.83829 1.02925 1.48255 1.63042 1.13378 1.07438 1.19332 0.96508 0.93663 0.77700 1.21419 0.96738 1.32160 1.06426 0.92329 1.24951 0.97944 0.94830 0.96388 1.69945 1.35673 1.33182 1.14320 0.86429 0.84445 0.78092 0.78359 1.19753 1.20932 1.20860 1.20276 0.79661 0.87385 0.85124 1.90741 1.45552 1.17562 1.86740 1.22056 1.05898 0.92616 0.85034 1.46261 1.11125 1.36727 1.30608 1.24852 0.84192 0.91892 0.87092 1.68702 1.32976 1.10848 1.12804 1.18462 0.88253 0.92366 0.92879 1.20670 1.00879 0.97909 0.97855 1.17710 0.93260 0.90332 0.86180 1.91530 1.92075 1.71260 1.56174 1.20849 0.95045 1.03636 1.00326 1.20592 0.99644 0.90570 0.91860 1.20597 0.95969 1.04009 1.00853 1.18223 0.84608 0.79616 0.82595 1.90868 1.19257 1.66177 1.61442 0.91897 0.92873 0.91828 0.89401 0.91761 0.94722 0.93897 0.92671 0.85995 0.85754 0.77974 0.83052 0.83801 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.43 5.93 -4.04 -0.02 1.40 16 3 N -0.59 -11.41 2.46 -175.06 -0.43 -11.84 16 4 C 0.25 6.17 5.16 -5.19 -0.03 6.14 16 5 C -0.53 -14.28 9.39 -34.44 -0.32 -14.61 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.49 9.37 7.74 -10.99 -0.09 9.29 16 14 O -0.53 -12.81 16.01 5.55 0.09 -12.72 16 15 C 0.07 0.90 4.40 -5.19 -0.02 0.88 16 16 N -0.53 -7.30 2.09 -120.18 -0.25 -7.55 16 17 C 0.41 4.88 11.40 -90.17 -1.03 3.86 16 18 N -0.53 -7.03 10.38 -12.02 -0.12 -7.16 16 19 C 0.19 2.56 6.63 -84.52 -0.56 2.00 16 20 C -0.15 -1.77 10.01 -39.19 -0.39 -2.16 16 21 C 0.15 1.57 7.28 -39.34 -0.29 1.29 16 22 F -0.13 -1.40 17.25 2.25 0.04 -1.36 16 23 C -0.18 -1.80 9.94 -39.81 -0.40 -2.19 16 24 C -0.01 -0.09 9.62 -39.72 -0.38 -0.47 16 25 C -0.21 -2.93 5.89 -104.77 -0.62 -3.55 16 26 C 0.56 8.80 7.66 -12.47 -0.10 8.70 16 27 O -0.50 -9.05 16.31 5.16 0.08 -8.97 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.27 8.07 -51.93 -0.42 0.86 16 32 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.12 1.00 7.25 -51.93 -0.38 0.62 16 37 H 0.12 1.49 6.50 -51.93 -0.34 1.15 16 38 H 0.20 1.63 7.99 -52.49 -0.42 1.21 16 39 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.15 1.58 7.82 -52.48 -0.41 1.17 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -35.65 360.72 -8.11 -43.76 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.71 Total: -0.96 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -3.96 Total: 10.45 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.07 Total: -51.82 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.17 Total: -21.68 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.65 -8.11 -43.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053637073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.746 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds