Wall clock time and date at job start Tue Mar 31 2020 18:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47225 * 2 1 4 4 C 1.46508 * 119.99531 * 269.99699 * 3 2 1 5 5 C 1.50694 * 109.47009 * 270.00085 * 4 3 2 6 6 H 1.08003 * 120.00223 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99794 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99648 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46640 * 119.99964 * 9 7 5 12 12 H 1.48497 * 109.47285 * 239.99803 * 9 7 5 13 13 C 1.34767 * 120.00475 * 89.99662 * 3 2 1 14 14 O 1.21285 * 120.00622 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00135 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47765 * 179.97438 * 15 13 3 17 17 C 1.35850 * 119.68564 * 270.00590 * 16 15 13 18 18 N 1.29846 * 123.35247 * 179.97438 * 17 16 15 19 19 C 1.35662 * 121.58753 * 359.97438 * 18 17 16 20 20 C 1.39544 * 121.68969 * 179.97438 * 19 18 17 21 21 C 1.37983 * 119.52861 * 180.02562 * 20 19 18 22 22 F 1.35093 * 119.62583 * 180.02562 * 21 20 19 23 23 C 1.39148 * 120.75091 * 0.02562 * 21 20 19 24 24 C 1.36675 * 120.68316 * 0.02562 * 23 21 20 25 25 C 1.39385 * 119.66583 * 359.97438 * 24 23 21 26 26 C 1.35344 * 119.68056 * 89.99575 * 16 15 13 27 27 O 1.21733 * 121.28910 * 0.27832 * 26 16 15 28 28 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46965 * 300.00678 * 1 2 3 30 30 H 1.08999 * 109.46778 * 60.00246 * 1 2 3 31 31 H 1.08997 * 109.46965 * 239.99322 * 2 1 3 32 32 H 1.08999 * 109.46778 * 119.99754 * 2 1 3 33 33 H 1.08999 * 109.46697 * 30.00335 * 4 3 2 34 34 H 1.09001 * 109.46425 * 150.00084 * 4 3 2 35 35 H 0.97005 * 119.99241 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47164 * 59.99693 * 15 13 3 37 37 H 1.09005 * 109.47145 * 300.00307 * 15 13 3 38 38 H 1.08000 * 118.32691 * 359.96445 * 17 16 15 39 39 H 1.08005 * 120.23471 * 0.05148 * 20 19 18 40 40 H 1.08001 * 119.65763 * 179.97438 * 23 21 20 41 41 H 1.08004 * 120.16757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2689 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1495 2.3902 -2.8776 8 7 3.3498 3.1271 -3.6172 9 14 5.9140 2.0971 -3.4164 10 1 6.6012 1.2410 -2.4164 11 1 5.9218 1.4185 -4.7372 12 1 6.6212 3.3984 -3.5243 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1599 1.1671 15 6 1.9924 1.3061 2.4723 16 7 2.3101 2.2036 3.5858 17 6 3.5688 2.2223 4.0966 18 7 3.9282 2.9888 5.0812 19 6 3.0539 3.8384 5.6762 20 6 3.4378 4.6626 6.7348 21 6 2.5114 5.5098 7.3076 22 9 2.8810 6.3089 8.3321 23 6 1.2008 5.5504 6.8419 24 6 0.8033 4.7510 5.8070 25 6 1.7203 3.8865 5.2115 26 6 1.3469 3.0061 4.0956 27 8 0.2140 2.9955 3.6502 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6875 -2.0284 34 1 2.0957 3.1409 -1.1385 35 1 3.6759 3.5174 -4.4432 36 1 2.6229 0.4188 2.5299 37 1 0.9445 1.0115 2.5302 38 1 4.3082 1.5662 3.6617 39 1 4.4529 4.6379 7.1028 40 1 0.4901 6.2199 7.3035 41 1 -0.2162 4.7889 5.4524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053637073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:51 Heat of formation + Delta-G solvation = -78.642140 kcal Electronic energy + Delta-G solvation = -28162.191305 eV Core-core repulsion = 23956.178565 eV Total energy + Delta-G solvation = -4206.012740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.12253 -42.85482 -40.77972 -39.45051 -38.58396 -37.03862 -35.44896 -34.85924 -32.42815 -31.65645 -31.23682 -30.27552 -28.37354 -26.07329 -25.44225 -24.59964 -23.95206 -23.38329 -20.62662 -20.24775 -19.87026 -18.71565 -18.62482 -18.25619 -17.54712 -17.35038 -16.98066 -16.88609 -16.57133 -16.52661 -16.27945 -15.71558 -15.29256 -15.12665 -14.80320 -14.60434 -14.47765 -14.45125 -14.36814 -14.12709 -13.68251 -13.39342 -13.24428 -13.17643 -13.02311 -12.76306 -12.69038 -12.50404 -12.15944 -11.90006 -11.68287 -11.59311 -11.50642 -11.16498 -10.65819 -10.64362 -10.10694 -9.51024 -9.32989 -8.22544 -6.37339 -0.71030 -0.44621 0.98198 1.15681 1.38415 1.40841 1.52260 1.53239 1.66969 2.24624 2.42523 2.69912 2.75209 2.98010 3.08331 3.28346 3.49146 3.50197 3.71551 3.77865 3.90559 4.07244 4.09854 4.18897 4.24146 4.42543 4.62088 4.65760 4.75525 4.89003 4.89996 4.95255 4.98287 5.04784 5.13622 5.21150 5.35435 5.40366 5.56364 5.58199 5.81044 6.04209 6.42856 6.65787 6.68736 6.74779 7.23921 7.38513 8.85307 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.003031 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.352681 B = 9237.175986 C =10174.925337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.970 3.030 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.287 1.287 13 C 0.483 3.517 14 O -0.593 6.593 15 C 0.083 3.917 16 N -0.529 5.529 17 C 0.401 3.599 18 N -0.542 5.542 19 C 0.174 3.826 20 C -0.155 4.155 21 C 0.150 3.850 22 F -0.128 7.128 23 C -0.165 4.165 24 C -0.015 4.015 25 C -0.232 4.232 26 C 0.545 3.455 27 O -0.540 6.540 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.021 0.979 34 H -0.012 1.012 35 H 0.265 0.735 36 H 0.183 0.817 37 H 0.138 0.862 38 H 0.244 0.756 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -7.148 21.223 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.325 5.325 4 C 0.141 3.859 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.794 3.206 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.214 1.214 13 C 0.270 3.730 14 O -0.474 6.474 15 C -0.042 4.042 16 N -0.249 5.249 17 C 0.115 3.885 18 N -0.262 5.262 19 C 0.064 3.936 20 C -0.175 4.175 21 C 0.129 3.871 22 F -0.106 7.106 23 C -0.184 4.184 24 C -0.035 4.035 25 C -0.238 4.238 26 C 0.339 3.661 27 O -0.416 6.416 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.039 0.961 34 H 0.006 0.994 35 H 0.074 0.926 36 H 0.200 0.800 37 H 0.156 0.844 38 H 0.260 0.740 39 H 0.182 0.818 40 H 0.192 0.808 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.706 -6.339 21.232 22.322 hybrid contribution -0.066 0.747 -1.252 1.459 sum -2.773 -5.592 19.980 20.932 Atomic orbital electron populations 1.22198 0.95290 1.03636 1.01304 1.21904 0.94770 0.80794 1.05153 1.48248 1.63078 1.15391 1.05810 1.18710 0.95717 0.91153 0.80291 1.21745 0.97533 1.31778 1.06427 0.91718 1.25925 1.02477 0.94523 0.96616 1.70086 1.37892 1.34412 1.14883 0.85330 0.78862 0.77868 0.78531 1.18144 1.19790 1.21372 1.21363 0.77952 0.86853 0.86839 1.90707 1.48309 1.20501 1.87874 1.22168 1.08122 0.92993 0.80874 1.46331 1.11481 1.36606 1.30493 1.25662 0.84050 0.92070 0.86680 1.68703 1.33035 1.11088 1.13370 1.18670 0.88167 0.93123 0.93634 1.20843 1.01725 0.97587 0.97373 1.17770 0.93425 0.89948 0.85973 1.91545 1.92071 1.71058 1.55947 1.21122 0.95254 1.02874 0.99139 1.20749 0.99720 0.90644 0.92340 1.20754 0.96937 1.04889 1.01180 1.18619 0.84604 0.79897 0.82942 1.90829 1.20620 1.67447 1.62738 0.88150 0.92773 0.94781 0.90128 0.86497 0.96081 0.99371 0.92580 0.80038 0.84415 0.74026 0.81770 0.80778 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.10 2.43 5.93 86.38 0.51 2.94 16 3 N -0.59 -23.03 2.46 -826.15 -2.03 -25.06 16 4 C 0.26 13.77 5.16 85.63 0.44 14.21 16 5 C -0.54 -29.46 9.39 25.60 0.24 -29.22 16 6 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 7 C 0.00 0.18 5.46 84.66 0.46 0.64 16 8 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 9 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.48 18.30 7.74 87.66 0.68 18.98 16 14 O -0.59 -29.74 16.01 -3.04 -0.05 -29.79 16 15 C 0.08 1.93 4.40 85.63 0.38 2.31 16 16 N -0.53 -13.94 2.09 -652.00 -1.37 -15.31 16 17 C 0.40 8.85 11.40 180.19 2.06 10.91 16 18 N -0.54 -13.61 10.38 -191.94 -1.99 -15.61 16 19 C 0.17 4.56 6.63 39.62 0.26 4.83 16 20 C -0.16 -3.40 10.01 22.52 0.23 -3.18 16 21 C 0.15 2.97 7.28 22.43 0.16 3.14 16 22 F -0.13 -2.44 17.25 44.97 0.78 -1.66 16 23 C -0.17 -3.02 9.94 22.12 0.22 -2.80 16 24 C -0.02 -0.35 9.62 22.18 0.21 -0.14 16 25 C -0.23 -6.51 5.89 -19.96 -0.12 -6.62 16 26 C 0.54 17.25 7.66 86.44 0.66 17.91 16 27 O -0.54 -19.76 16.31 -4.45 -0.07 -19.83 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.23 7.22 -2.39 -0.02 1.21 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 32 H 0.12 1.76 6.44 -2.39 -0.02 1.75 16 33 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 34 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.18 1.97 7.25 -2.38 -0.02 1.95 16 37 H 0.14 2.92 6.50 -2.38 -0.02 2.90 16 38 H 0.24 3.04 7.99 -2.91 -0.02 3.01 16 39 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.15 3.27 7.82 -2.91 -0.02 3.25 16 Total: -1.00 -84.20 360.72 5.79 -78.42 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.07 Total: 8.32 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 7.13 Total: 30.85 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -5.10 Total: -111.88 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.12 Total: -49.62 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -84.20 5.79 -78.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053637073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.224 kcal (2) G-P(sol) polarization free energy of solvation -84.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds