Wall clock time and date at job start Tue Mar 31 2020 18:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46787 * 2 1 4 4 C 1.36036 * 126.35074 * 269.98378 * 3 2 1 5 5 C 1.50700 * 124.94846 * 0.05961 * 4 3 2 6 6 C 1.52998 * 109.47413 * 90.00113 * 5 4 3 7 7 N 1.46498 * 109.47034 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99756 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99950 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99755 * 180.02562 * 8 7 6 11 11 S 1.81001 * 109.47015 * 180.02562 * 10 8 7 12 12 C 1.76191 * 100.00247 * 179.97438 * 11 10 8 13 13 H 1.08008 * 120.00070 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47123 * 60.00365 * 16 14 12 18 18 H 1.48504 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47020 * 300.00130 * 16 14 12 20 20 N 1.30106 * 110.10195 * 180.02562 * 4 3 2 21 21 C 1.35787 * 109.64359 * 359.97438 * 20 4 3 22 22 C 1.39734 * 133.60143 * 179.97438 * 21 20 4 23 23 C 1.36605 * 119.88806 * 180.02562 * 22 21 20 24 24 C 1.38776 * 120.66622 * 359.97438 * 23 22 21 25 25 C 1.37851 * 120.45485 * 0.03810 * 24 23 22 26 26 C 1.38058 * 126.34607 * 90.02555 * 3 2 1 27 27 H 1.08994 * 109.47216 * 59.99900 * 1 2 3 28 28 H 1.09003 * 109.46577 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46734 * 299.99857 * 1 2 3 30 30 H 1.08997 * 109.47000 * 240.00547 * 2 1 3 31 31 H 1.08994 * 109.47216 * 120.00100 * 2 1 3 32 32 H 1.09004 * 109.46991 * 210.00395 * 5 4 3 33 33 H 1.09004 * 109.47138 * 329.99711 * 5 4 3 34 34 H 1.09000 * 109.46836 * 299.99952 * 6 5 4 35 35 H 1.08991 * 109.47103 * 59.99830 * 6 5 4 36 36 H 0.96992 * 120.00243 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.47274 * 299.99899 * 10 8 7 38 38 H 1.09000 * 109.47411 * 60.00414 * 10 8 7 39 39 H 0.97000 * 120.00533 * 179.97438 * 15 14 12 40 40 H 1.08009 * 120.05649 * 0.29744 * 22 21 20 41 41 H 1.08001 * 119.66343 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.77372 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.15788 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2874 2.1414 -1.0956 5 6 2.1255 1.6861 -2.5231 6 6 0.7111 2.0139 -3.0057 7 7 0.5541 1.5719 -4.3936 8 6 -0.6186 1.7579 -5.0314 9 8 -1.5436 2.2916 -4.4566 10 6 -0.7804 1.3026 -6.4589 11 16 -2.4535 1.6906 -7.0299 12 6 -2.3667 1.0694 -8.6764 13 1 -1.4538 0.6177 -9.0357 14 6 -3.4714 1.1606 -9.5118 15 7 -4.5838 1.7116 -9.0741 16 14 -3.3794 0.5014 -11.2572 17 1 -3.0753 -0.9516 -11.2221 18 1 -4.6814 0.7187 -11.9377 19 1 -2.3085 1.2136 -11.9995 20 7 2.7041 3.3189 -0.7316 21 6 2.7303 3.3949 0.6239 22 6 3.0865 4.4009 1.5260 23 6 3.0047 4.1703 2.8699 24 6 2.5697 2.9440 3.3524 25 6 2.2133 1.9369 2.4812 26 6 2.2915 2.1525 1.1120 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.8524 2.1993 -3.1527 33 1 2.2893 0.6101 -2.5821 34 1 -0.0157 1.5007 -2.3761 35 1 0.5474 3.0899 -2.9468 36 1 1.2937 1.1447 -4.8532 37 1 -0.0538 1.8161 -7.0886 38 1 -0.6163 0.2267 -6.5179 39 1 -5.3557 1.7757 -9.6580 40 1 3.4218 5.3607 1.1612 41 1 3.2813 4.9503 3.5639 42 1 2.5101 2.7775 4.4179 43 1 1.8758 0.9843 2.8620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065928904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:25 Heat of formation + Delta-G solvation = 27.897025 kcal Electronic energy + Delta-G solvation = -24688.566957 eV Core-core repulsion = 21053.387279 eV Total energy + Delta-G solvation = -3635.179679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53048 -39.23663 -37.86464 -35.35637 -35.30430 -32.44029 -32.14129 -31.45605 -29.71335 -29.55927 -28.10587 -25.51651 -24.36034 -24.00951 -22.40716 -22.01116 -20.58817 -19.97242 -17.87974 -17.74401 -17.44360 -16.38849 -16.33413 -15.64629 -15.56879 -15.44809 -14.88126 -14.81251 -14.60815 -14.15653 -14.03981 -14.01366 -13.39857 -13.30966 -13.22974 -12.72364 -12.54271 -12.49977 -12.37469 -12.15332 -11.85029 -11.66964 -11.64252 -11.39568 -11.05732 -11.04582 -10.78189 -10.67224 -10.18375 -9.84092 -9.47651 -9.07717 -8.96557 -8.59358 -8.36588 -8.25417 -6.51464 -6.22379 -3.93355 0.64946 1.24019 2.20087 2.43375 2.98623 3.05428 3.22783 3.26280 3.29120 3.57601 3.62254 3.91232 4.12910 4.15785 4.19513 4.50012 4.58488 4.62039 4.66987 4.70951 4.71999 4.99774 5.09900 5.12612 5.12902 5.16375 5.17894 5.22625 5.34383 5.48558 5.52074 5.61717 5.72123 5.83981 5.87069 5.93394 6.11353 6.14653 6.22817 6.26012 6.49559 6.59431 6.80747 7.58099 7.62655 7.62899 8.33959 8.55794 9.22685 10.84953 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.001873 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.383816 B =14947.498600 C =15135.575765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 N -0.485 5.485 4 C 0.291 3.709 5 C -0.055 4.055 6 C 0.127 3.873 7 N -0.739 5.739 8 C 0.533 3.467 9 O -0.515 6.515 10 C -0.153 4.153 11 S -0.060 6.060 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 N -0.487 5.487 21 C 0.047 3.953 22 C -0.063 4.063 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.110 4.110 26 C 0.049 3.951 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.255 -3.679 23.396 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 N -0.175 5.175 4 C 0.025 3.975 5 C -0.094 4.094 6 C 0.002 3.998 7 N -0.394 5.394 8 C 0.319 3.681 9 O -0.389 6.389 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.199 1.199 20 N -0.206 5.206 21 C -0.072 4.072 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.060 4.060 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.691 -2.202 23.793 29.147 hybrid contribution 1.226 -1.965 -1.416 2.715 sum 17.918 -4.167 22.376 28.967 Atomic orbital electron populations 1.22283 0.93697 1.03632 1.03794 1.21841 0.95982 0.79323 1.04542 1.45383 1.54172 1.13056 1.04921 1.23187 0.97123 0.86930 0.90230 1.20365 0.99223 1.02372 0.87463 1.21201 0.94148 1.01402 0.83089 1.45934 1.15611 1.64441 1.13458 1.20327 0.81557 0.78095 0.88146 1.90717 1.39411 1.41150 1.67573 1.23529 1.08115 1.04259 0.94468 1.85423 1.05052 1.79348 1.13511 1.22824 1.01782 1.45805 0.98065 0.90946 1.24994 0.94514 0.94971 0.99106 1.70004 1.02356 1.41266 1.36635 0.86221 0.77580 0.79292 0.82385 1.19953 1.20811 1.19924 1.70439 1.21786 1.17425 1.10908 1.19078 1.04208 0.93750 0.90158 1.20048 0.98984 0.97644 0.91570 1.20641 1.02009 0.97641 0.94807 1.20876 0.99363 0.92938 0.99211 1.19936 1.04122 1.00251 0.88790 1.18882 1.04822 0.92921 0.89382 0.91095 0.90162 0.91779 0.88666 0.89146 0.87246 0.89074 0.91421 0.90575 0.76672 0.89075 0.89160 0.92110 0.85346 0.85396 0.85374 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.10 0.65 6.65 -4.04 -0.03 0.62 16 3 N -0.49 -4.64 2.81 -111.15 -0.31 -4.95 16 4 C 0.29 3.17 7.11 -154.83 -1.10 2.07 16 5 C -0.05 -0.45 5.62 -27.88 -0.16 -0.61 16 6 C 0.13 1.45 5.66 -4.04 -0.02 1.43 16 7 N -0.74 -9.14 5.56 -60.30 -0.34 -9.48 16 8 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16 9 O -0.51 -11.62 15.86 5.56 0.09 -11.53 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 13 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 16 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 N -0.49 -6.51 11.27 -8.24 -0.09 -6.60 16 21 C 0.05 0.58 7.23 -84.70 -0.61 -0.03 16 22 C -0.06 -0.65 10.05 -39.61 -0.40 -1.04 16 23 C -0.13 -1.04 9.96 -39.97 -0.40 -1.44 16 24 C -0.10 -0.78 10.03 -39.52 -0.40 -1.17 16 25 C -0.11 -0.94 10.05 -39.50 -0.40 -1.33 16 26 C 0.05 0.53 6.88 -83.98 -0.58 -0.05 16 27 H 0.07 0.63 5.95 -51.93 -0.31 0.32 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.43 7.00 -51.93 -0.36 0.06 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.51 7.01 -51.93 -0.36 0.14 16 34 H 0.07 0.82 5.95 -51.93 -0.31 0.51 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.53 8.47 -40.82 -0.35 3.18 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -37.20 378.34 -10.71 -47.91 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.89 Total: 0.35 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.37 Total: -8.47 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.01 Total: -46.37 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.20 -10.71 -47.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065928904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.811 kcal (2) G-P(sol) polarization free energy of solvation -37.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds