Wall clock time and date at job start Tue Mar 31 2020 18:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46787 * 2 1 4 4 C 1.36036 * 126.35074 * 269.98378 * 3 2 1 5 5 C 1.50700 * 124.94846 * 0.05961 * 4 3 2 6 6 C 1.52998 * 109.47413 * 90.00113 * 5 4 3 7 7 N 1.46498 * 109.47034 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99756 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99950 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99755 * 180.02562 * 8 7 6 11 11 S 1.81001 * 109.47015 * 180.02562 * 10 8 7 12 12 C 1.76191 * 100.00247 * 179.97438 * 11 10 8 13 13 H 1.08008 * 120.00070 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47123 * 60.00365 * 16 14 12 18 18 H 1.48504 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47020 * 300.00130 * 16 14 12 20 20 N 1.30106 * 110.10195 * 180.02562 * 4 3 2 21 21 C 1.35787 * 109.64359 * 359.97438 * 20 4 3 22 22 C 1.39734 * 133.60143 * 179.97438 * 21 20 4 23 23 C 1.36605 * 119.88806 * 180.02562 * 22 21 20 24 24 C 1.38776 * 120.66622 * 359.97438 * 23 22 21 25 25 C 1.37851 * 120.45485 * 0.03810 * 24 23 22 26 26 C 1.38058 * 126.34607 * 90.02555 * 3 2 1 27 27 H 1.08994 * 109.47216 * 59.99900 * 1 2 3 28 28 H 1.09003 * 109.46577 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46734 * 299.99857 * 1 2 3 30 30 H 1.08997 * 109.47000 * 240.00547 * 2 1 3 31 31 H 1.08994 * 109.47216 * 120.00100 * 2 1 3 32 32 H 1.09004 * 109.46991 * 210.00395 * 5 4 3 33 33 H 1.09004 * 109.47138 * 329.99711 * 5 4 3 34 34 H 1.09000 * 109.46836 * 299.99952 * 6 5 4 35 35 H 1.08991 * 109.47103 * 59.99830 * 6 5 4 36 36 H 0.96992 * 120.00243 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.47274 * 299.99899 * 10 8 7 38 38 H 1.09000 * 109.47411 * 60.00414 * 10 8 7 39 39 H 0.97000 * 120.00533 * 179.97438 * 15 14 12 40 40 H 1.08009 * 120.05649 * 0.29744 * 22 21 20 41 41 H 1.08001 * 119.66343 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.77372 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.15788 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2874 2.1414 -1.0956 5 6 2.1255 1.6861 -2.5231 6 6 0.7111 2.0139 -3.0057 7 7 0.5541 1.5719 -4.3936 8 6 -0.6186 1.7579 -5.0314 9 8 -1.5436 2.2916 -4.4566 10 6 -0.7804 1.3026 -6.4589 11 16 -2.4535 1.6906 -7.0299 12 6 -2.3667 1.0694 -8.6764 13 1 -1.4538 0.6177 -9.0357 14 6 -3.4714 1.1606 -9.5118 15 7 -4.5838 1.7116 -9.0741 16 14 -3.3794 0.5014 -11.2572 17 1 -3.0753 -0.9516 -11.2221 18 1 -4.6814 0.7187 -11.9377 19 1 -2.3085 1.2136 -11.9995 20 7 2.7041 3.3189 -0.7316 21 6 2.7303 3.3949 0.6239 22 6 3.0865 4.4009 1.5260 23 6 3.0047 4.1703 2.8699 24 6 2.5697 2.9440 3.3524 25 6 2.2133 1.9369 2.4812 26 6 2.2915 2.1525 1.1120 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.8524 2.1993 -3.1527 33 1 2.2893 0.6101 -2.5821 34 1 -0.0157 1.5007 -2.3761 35 1 0.5474 3.0899 -2.9468 36 1 1.2937 1.1447 -4.8532 37 1 -0.0538 1.8161 -7.0886 38 1 -0.6163 0.2267 -6.5179 39 1 -5.3557 1.7757 -9.6580 40 1 3.4218 5.3607 1.1612 41 1 3.2813 4.9503 3.5639 42 1 2.5101 2.7775 4.4179 43 1 1.8758 0.9843 2.8620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065928904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:25 Heat of formation + Delta-G solvation = 3.223741 kcal Electronic energy + Delta-G solvation = -24689.636871 eV Core-core repulsion = 21053.387279 eV Total energy + Delta-G solvation = -3636.249593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.24110 -40.63942 -38.54311 -36.46123 -35.99240 -34.57388 -33.17318 -32.11382 -30.83563 -30.36312 -29.05328 -27.65142 -25.11029 -24.79250 -23.10004 -22.73191 -21.87444 -20.77276 -19.81135 -18.42792 -18.12202 -17.78809 -17.41899 -16.86713 -16.79831 -16.47718 -16.26891 -15.74429 -15.63845 -15.27605 -15.09665 -14.75301 -14.67538 -14.51537 -14.03513 -13.93933 -13.62481 -13.44204 -13.15932 -13.04866 -13.02264 -12.85510 -12.62294 -12.58529 -12.35197 -12.29937 -12.12752 -11.74207 -11.37915 -11.11797 -11.03239 -10.95036 -10.26280 -10.18760 -9.29372 -9.07672 -8.65975 -8.33379 -6.11669 -0.04481 0.55933 1.25879 1.44847 1.45184 1.53583 1.59545 1.61282 1.71519 2.23907 2.29314 2.90532 3.00735 3.12699 3.33392 3.45143 3.68110 3.76439 3.89387 4.01088 4.02264 4.07016 4.13317 4.22481 4.32915 4.39236 4.45910 4.48159 4.51176 4.53557 4.63420 4.74828 4.83427 4.86667 4.92596 5.20398 5.25368 5.32534 5.42938 5.46537 5.57605 5.59211 5.97026 6.14640 6.20795 6.48520 6.86518 7.07795 7.22727 8.75517 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.001873 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.383816 B =14947.498600 C =15135.575765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.482 5.482 4 C 0.281 3.719 5 C -0.042 4.042 6 C 0.133 3.867 7 N -0.707 5.707 8 C 0.534 3.466 9 O -0.568 6.568 10 C -0.128 4.128 11 S -0.156 6.156 12 C -0.545 4.545 13 H 0.085 0.915 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.262 1.262 20 N -0.529 5.529 21 C 0.007 3.993 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.101 4.101 25 C -0.115 4.115 26 C 0.033 3.967 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.422 0.578 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.271 0.729 40 H 0.127 0.873 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.509 -6.038 23.907 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.172 5.172 4 C 0.014 3.986 5 C -0.081 4.081 6 C 0.008 3.992 7 N -0.363 5.363 8 C 0.320 3.680 9 O -0.446 6.446 10 C -0.279 4.279 11 S 0.071 5.929 12 C -0.693 4.693 13 H 0.103 0.897 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.820 3.180 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.187 1.187 20 N -0.249 5.249 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.145 4.145 24 C -0.121 4.121 25 C -0.136 4.136 26 C -0.076 4.076 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.260 0.740 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.145 0.855 41 H 0.173 0.827 42 H 0.179 0.821 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 19.012 -4.598 24.317 31.208 hybrid contribution 0.611 -1.201 -1.388 1.934 sum 19.623 -5.799 22.929 30.732 Atomic orbital electron populations 1.22245 0.94439 1.04289 1.02025 1.22142 0.95246 0.77894 1.06744 1.45565 1.53515 1.13938 1.04193 1.23494 0.96967 0.86761 0.91331 1.20346 0.96795 1.04732 0.86199 1.21144 0.96425 0.99549 0.82102 1.45562 1.14341 1.62689 1.13673 1.20116 0.82439 0.77733 0.87668 1.90710 1.41622 1.43788 1.68450 1.23363 1.03007 1.06062 0.95465 1.85642 1.12150 1.80340 1.14776 1.23178 1.02430 1.45611 0.98089 0.89677 1.26144 0.93942 0.95045 1.04148 1.70181 1.03310 1.42862 1.38504 0.84999 0.77822 0.79100 0.76047 1.18491 1.20576 1.18698 1.70354 1.23496 1.19118 1.11949 1.19522 1.05877 0.95405 0.90300 1.20287 1.00330 0.97622 0.92613 1.21013 1.00601 0.98705 0.94205 1.21333 0.97739 0.92196 1.00792 1.20321 1.03715 1.01640 0.87931 1.19222 1.05148 0.92677 0.90555 0.93433 0.88236 0.92928 0.86398 0.87051 0.86266 0.85360 0.91889 0.93496 0.74000 0.86991 0.86574 0.92048 0.85488 0.82740 0.82090 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 71.98 0.74 -1.41 16 2 C 0.10 1.00 6.65 86.38 0.57 1.57 16 3 N -0.48 -8.73 2.81 -505.58 -1.42 -10.15 16 4 C 0.28 6.00 7.11 137.92 0.98 6.98 16 5 C -0.04 -0.62 5.62 29.85 0.17 -0.45 16 6 C 0.13 2.98 5.66 86.38 0.49 3.47 16 7 N -0.71 -16.27 5.56 -463.07 -2.57 -18.84 16 8 C 0.53 19.11 7.85 87.66 0.69 19.80 16 9 O -0.57 -26.42 15.86 -3.02 -0.05 -26.46 16 10 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 11 S -0.16 -8.61 20.57 -56.49 -1.16 -9.77 16 12 C -0.55 -30.77 9.50 67.95 0.65 -30.12 16 13 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 14 C 0.01 0.67 5.49 84.86 0.47 1.14 16 15 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 16 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 N -0.53 -14.68 11.27 -179.97 -2.03 -16.71 16 21 C 0.01 0.18 7.23 39.45 0.29 0.46 16 22 C -0.09 -1.88 10.05 22.25 0.22 -1.66 16 23 C -0.13 -1.84 9.96 22.02 0.22 -1.62 16 24 C -0.10 -1.28 10.03 22.31 0.22 -1.06 16 25 C -0.12 -1.76 10.05 22.32 0.22 -1.53 16 26 C 0.03 0.70 6.88 38.86 0.27 0.97 16 27 H 0.05 0.82 5.95 -2.39 -0.01 0.81 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.12 0.64 7.00 -2.39 -0.02 0.62 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.13 0.94 7.01 -2.38 -0.02 0.92 16 34 H 0.06 1.53 5.95 -2.39 -0.01 1.51 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 6.02 8.47 -92.71 -0.79 5.24 16 37 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 38 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -86.51 378.34 1.96 -84.55 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.25 Total: 15.80 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.63 Total: -7.88 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -5.73 Total: -101.45 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -86.51 1.96 -84.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065928904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.771 kcal (2) G-P(sol) polarization free energy of solvation -86.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds