Wall clock time and date at job start Tue Mar 31 2020 19:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46998 * 2 1 4 4 C 1.37092 * 120.00317 * 264.74671 * 3 2 1 5 5 H 1.08001 * 120.00732 * 146.16309 * 4 3 2 6 6 C 1.38955 * 119.99762 * 326.16336 * 4 3 2 7 7 N 1.31401 * 120.00246 * 337.69092 * 6 4 3 8 8 Si 1.86811 * 119.99713 * 157.68724 * 6 4 3 9 9 H 1.48498 * 109.46709 * 60.00179 * 8 6 4 10 10 H 1.48499 * 109.46842 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47094 * 300.00116 * 8 6 4 12 12 C 1.34780 * 119.99949 * 84.75339 * 3 2 1 13 13 O 1.21296 * 120.00171 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99742 * 359.97438 * 12 3 2 15 15 S 1.80999 * 109.46911 * 180.02562 * 14 12 3 16 16 C 1.76200 * 100.00155 * 179.97438 * 15 14 12 17 17 N 1.32463 * 119.82908 * 0.02562 * 16 15 14 18 18 C 1.31860 * 121.76857 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.38069 * 180.27905 * 18 17 16 20 20 C 1.38356 * 121.23485 * 0.02562 * 18 17 16 21 21 C 1.50697 * 120.24046 * 179.97438 * 20 18 17 22 22 C 1.38389 * 119.51693 * 359.97438 * 20 18 17 23 23 C 1.50695 * 120.81123 * 180.02562 * 22 20 18 24 24 C 1.39956 * 118.36897 * 0.02562 * 22 20 18 25 25 C 1.43203 * 120.61048 * 180.02562 * 24 22 20 26 26 N 8.27575 * 96.16165 * 57.46649 * 2 1 3 27 27 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47420 * 299.99775 * 1 2 3 29 29 H 1.09002 * 109.47392 * 59.99444 * 1 2 3 30 30 H 1.09001 * 109.47420 * 240.00225 * 2 1 3 31 31 H 1.08999 * 109.46932 * 120.00333 * 2 1 3 32 32 H 0.97001 * 120.00311 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47253 * 60.00687 * 14 12 3 34 34 H 1.08998 * 109.46787 * 300.00199 * 14 12 3 35 35 H 1.09002 * 109.46961 * 269.72751 * 19 18 17 36 36 H 1.09004 * 109.47120 * 29.72904 * 19 18 17 37 37 H 1.09002 * 109.47107 * 149.72504 * 19 18 17 38 38 H 1.09003 * 109.47244 * 90.00300 * 21 20 18 39 39 H 1.09001 * 109.46915 * 209.99592 * 21 20 18 40 40 H 1.08994 * 109.47449 * 330.00114 * 21 20 18 41 41 H 1.08996 * 109.47162 * 90.00222 * 23 22 20 42 42 H 1.09003 * 109.46868 * 210.00518 * 23 22 20 43 43 H 1.08997 * 109.47261 * 330.00236 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3492 1.9913 -1.1822 5 1 2.1814 3.0507 -1.3089 6 6 2.9007 1.2467 -2.2177 7 7 3.5051 0.1089 -1.9594 8 14 2.7827 1.8632 -3.9772 9 1 3.4561 3.1822 -4.0856 10 1 3.4435 0.8932 -4.8869 11 1 1.3542 2.0039 -4.3577 12 6 2.1422 2.0521 1.1623 13 8 2.5461 3.1959 1.1623 14 6 1.7780 1.3816 2.4619 15 16 2.0508 2.5327 3.8318 16 6 1.5589 1.5186 5.1862 17 7 1.1430 0.2805 4.9653 18 6 0.7666 -0.5115 5.9500 19 6 0.3087 -1.9129 5.6379 20 6 0.7890 -0.0817 7.2650 21 6 0.3533 -1.0056 8.3729 22 6 1.2145 1.2027 7.5553 23 6 1.2513 1.7009 8.9770 24 6 1.6099 2.0276 6.4960 25 6 2.0591 3.3650 6.7417 26 7 2.4182 4.4249 6.9368 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8897 -0.4111 -2.6822 33 1 2.3994 0.4970 2.6010 34 1 0.7285 1.0884 2.4377 35 1 -0.7683 -1.9142 5.4695 36 1 0.8169 -2.2702 4.7422 37 1 0.5462 -2.5679 6.4761 38 1 1.2130 -1.5694 8.7351 39 1 -0.0673 -0.4196 9.1902 40 1 -0.4008 -1.6958 7.9951 41 1 2.2249 1.4800 9.4144 42 1 1.0833 2.7778 8.9891 43 1 0.4721 1.2051 9.5560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:46 Heat of formation + Delta-G solvation = 25.349426 kcal Electronic energy + Delta-G solvation = -25641.972182 eV Core-core repulsion = 22006.682031 eV Total energy + Delta-G solvation = -3635.290151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.75622 -38.58570 -36.78355 -35.09646 -34.90661 -33.80171 -32.19829 -29.62566 -29.42964 -29.00875 -28.72577 -26.83171 -24.75872 -23.25969 -22.31971 -21.68498 -19.41290 -18.43370 -17.71436 -16.96747 -16.77211 -16.05965 -15.53650 -15.07575 -14.68011 -14.40337 -14.11386 -13.88201 -13.82941 -13.74888 -13.48415 -13.22624 -13.06457 -13.01349 -12.97445 -12.80115 -12.70650 -12.55356 -12.46945 -12.19389 -11.90016 -11.89173 -11.72887 -11.43289 -11.12491 -11.03028 -10.43873 -10.40324 -10.26319 -10.12008 -9.74452 -9.71250 -9.43787 -9.00087 -8.60257 -7.60086 -7.41669 -6.40100 -4.01360 0.37756 0.86807 1.55272 2.31282 2.68464 2.81566 3.15931 3.22825 3.26854 3.58678 3.68962 3.76033 4.10617 4.19878 4.24109 4.59133 4.65232 4.77509 4.78263 4.95741 5.04360 5.10416 5.20667 5.29749 5.35848 5.40516 5.51514 5.51665 5.60866 5.62212 5.71091 5.77211 5.80225 5.92779 6.00715 6.18207 6.28563 6.31591 6.48271 6.84168 7.21206 7.40438 7.53946 7.58732 8.13297 8.40810 9.07812 9.30699 9.87752 10.63470 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003076 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.391737 B = 9099.290048 C =10318.470124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.428 5.428 4 C -0.309 4.309 5 H 0.094 0.906 6 C 0.038 3.962 7 N -0.866 5.866 8 Si 0.920 3.080 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.464 3.536 13 O -0.571 6.571 14 C -0.126 4.126 15 S 0.031 5.969 16 C 0.153 3.847 17 N -0.488 5.488 18 C 0.180 3.820 19 C -0.111 4.111 20 C -0.163 4.163 21 C -0.108 4.108 22 C 0.025 3.975 23 C -0.125 4.125 24 C -0.082 4.082 25 C 0.260 3.740 26 N -0.403 5.403 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.270 0.730 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 -9.280 19.109 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.147 5.147 4 C -0.437 4.437 5 H 0.112 0.888 6 C -0.167 4.167 7 N -0.504 5.504 8 Si 0.746 3.254 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.250 3.750 13 O -0.455 6.455 14 C -0.277 4.277 15 S 0.276 5.724 16 C -0.098 4.098 17 N -0.202 5.202 18 C 0.037 3.963 19 C -0.168 4.168 20 C -0.169 4.169 21 C -0.165 4.165 22 C 0.014 3.986 23 C -0.181 4.181 24 C -0.096 4.096 25 C -0.056 4.056 26 N -0.078 5.078 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.227 -6.320 18.192 20.570 hybrid contribution -0.579 -1.379 -0.190 1.507 sum -7.806 -7.699 18.002 21.078 Atomic orbital electron populations 1.22195 0.97990 1.00504 1.01514 1.21665 0.91912 0.85159 1.04365 1.43429 1.54991 1.11933 1.04336 1.19467 1.40222 0.95674 0.88352 0.88786 1.25354 0.94245 0.96443 1.00645 1.69908 1.32107 1.15175 1.33198 0.86096 0.78725 0.78842 0.81689 1.19633 1.20897 1.19792 1.19533 0.83478 0.88095 0.83865 1.90572 1.50638 1.18279 1.86024 1.23873 1.06954 1.01739 0.95162 1.86698 1.77080 1.15096 0.93522 1.23973 0.95100 0.94490 0.96280 1.68159 1.14402 1.02782 1.34848 1.21408 0.90782 0.95899 0.88200 1.20865 1.02291 0.90004 1.03670 1.20299 1.05553 0.95109 0.95957 1.20777 1.01635 0.98154 0.95932 1.20034 0.91591 0.92051 0.94945 1.20983 1.03756 1.02117 0.91291 1.16249 1.11144 0.88952 0.93232 1.25112 0.93970 0.92376 0.94144 1.81223 1.08595 1.10945 1.07080 0.92892 0.93951 0.92350 0.86674 0.93189 0.92009 0.87063 0.87253 0.89714 0.89775 0.90075 0.90802 0.91010 0.90807 0.89582 0.90962 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.15 37.16 0.38 -2.51 16 2 C 0.09 1.97 5.43 -4.04 -0.02 1.95 16 3 N -0.43 -10.76 2.56 -114.81 -0.29 -11.05 16 4 C -0.31 -8.50 8.98 -14.93 -0.13 -8.64 16 5 H 0.09 2.72 7.70 -52.49 -0.40 2.31 16 6 C 0.04 0.98 4.92 -17.47 -0.09 0.90 16 7 N -0.87 -22.84 11.33 55.50 0.63 -22.21 16 8 Si 0.92 20.33 29.61 -169.99 -5.03 15.30 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.46 11.45 7.61 -10.98 -0.08 11.36 16 13 O -0.57 -16.15 15.69 5.54 0.09 -16.06 16 14 C -0.13 -2.43 3.93 36.01 0.14 -2.29 16 15 S 0.03 0.57 20.19 -107.50 -2.17 -1.60 16 16 C 0.15 2.32 7.01 -16.38 -0.11 2.21 16 17 N -0.49 -6.81 9.03 -7.93 -0.07 -6.88 16 18 C 0.18 1.91 6.78 -82.54 -0.56 1.35 16 19 C -0.11 -0.81 9.33 36.00 0.34 -0.47 16 20 C -0.16 -1.45 5.89 -104.52 -0.62 -2.07 16 21 C -0.11 -0.55 8.80 36.00 0.32 -0.23 16 22 C 0.02 0.25 5.95 -103.93 -0.62 -0.37 16 23 C -0.13 -0.88 9.28 36.00 0.33 -0.55 16 24 C -0.08 -1.10 5.77 -106.43 -0.61 -1.71 16 25 C 0.26 3.86 12.92 -22.47 -0.29 3.56 16 26 N -0.40 -6.60 18.54 41.84 0.78 -5.83 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.70 6.59 -51.93 -0.34 0.36 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.12 2.69 5.34 -51.93 -0.28 2.41 16 31 H 0.05 0.97 6.66 -51.93 -0.35 0.62 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.11 2.06 7.39 -51.92 -0.38 1.67 16 34 H 0.11 1.93 6.52 -51.92 -0.34 1.59 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.40 6.67 -51.93 -0.35 0.05 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.28 6.05 -51.93 -0.31 -0.03 16 40 H 0.07 0.29 6.70 -51.93 -0.35 -0.06 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.57 7.19 -51.93 -0.37 0.20 16 43 H 0.08 0.40 6.06 -51.93 -0.31 0.09 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -32.59 371.06 -7.58 -40.17 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.46 Total: 0.07 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.63 Total: 2.50 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 1.04 Total: -45.97 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.17 Total: -1.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.59 -7.58 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.523 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds