Wall clock time and date at job start Tue Mar 31 2020 19:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46998 * 2 1 4 4 C 1.37092 * 120.00317 * 264.74671 * 3 2 1 5 5 H 1.08001 * 120.00732 * 146.16309 * 4 3 2 6 6 C 1.38955 * 119.99762 * 326.16336 * 4 3 2 7 7 N 1.31401 * 120.00246 * 337.69092 * 6 4 3 8 8 Si 1.86811 * 119.99713 * 157.68724 * 6 4 3 9 9 H 1.48498 * 109.46709 * 60.00179 * 8 6 4 10 10 H 1.48499 * 109.46842 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47094 * 300.00116 * 8 6 4 12 12 C 1.34780 * 119.99949 * 84.75339 * 3 2 1 13 13 O 1.21296 * 120.00171 * 180.02562 * 12 3 2 14 14 C 1.50703 * 119.99742 * 359.97438 * 12 3 2 15 15 S 1.80999 * 109.46911 * 180.02562 * 14 12 3 16 16 C 1.76200 * 100.00155 * 179.97438 * 15 14 12 17 17 N 1.32463 * 119.82908 * 0.02562 * 16 15 14 18 18 C 1.31860 * 121.76857 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.38069 * 180.27905 * 18 17 16 20 20 C 1.38356 * 121.23485 * 0.02562 * 18 17 16 21 21 C 1.50697 * 120.24046 * 179.97438 * 20 18 17 22 22 C 1.38389 * 119.51693 * 359.97438 * 20 18 17 23 23 C 1.50695 * 120.81123 * 180.02562 * 22 20 18 24 24 C 1.39956 * 118.36897 * 0.02562 * 22 20 18 25 25 C 1.43203 * 120.61048 * 180.02562 * 24 22 20 26 26 N 8.27575 * 96.16165 * 57.46649 * 2 1 3 27 27 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47420 * 299.99775 * 1 2 3 29 29 H 1.09002 * 109.47392 * 59.99444 * 1 2 3 30 30 H 1.09001 * 109.47420 * 240.00225 * 2 1 3 31 31 H 1.08999 * 109.46932 * 120.00333 * 2 1 3 32 32 H 0.97001 * 120.00311 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47253 * 60.00687 * 14 12 3 34 34 H 1.08998 * 109.46787 * 300.00199 * 14 12 3 35 35 H 1.09002 * 109.46961 * 269.72751 * 19 18 17 36 36 H 1.09004 * 109.47120 * 29.72904 * 19 18 17 37 37 H 1.09002 * 109.47107 * 149.72504 * 19 18 17 38 38 H 1.09003 * 109.47244 * 90.00300 * 21 20 18 39 39 H 1.09001 * 109.46915 * 209.99592 * 21 20 18 40 40 H 1.08994 * 109.47449 * 330.00114 * 21 20 18 41 41 H 1.08996 * 109.47162 * 90.00222 * 23 22 20 42 42 H 1.09003 * 109.46868 * 210.00518 * 23 22 20 43 43 H 1.08997 * 109.47261 * 330.00236 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3492 1.9913 -1.1822 5 1 2.1814 3.0507 -1.3089 6 6 2.9007 1.2467 -2.2177 7 7 3.5051 0.1089 -1.9594 8 14 2.7827 1.8632 -3.9772 9 1 3.4561 3.1822 -4.0856 10 1 3.4435 0.8932 -4.8869 11 1 1.3542 2.0039 -4.3577 12 6 2.1422 2.0521 1.1623 13 8 2.5461 3.1959 1.1623 14 6 1.7780 1.3816 2.4619 15 16 2.0508 2.5327 3.8318 16 6 1.5589 1.5186 5.1862 17 7 1.1430 0.2805 4.9653 18 6 0.7666 -0.5115 5.9500 19 6 0.3087 -1.9129 5.6379 20 6 0.7890 -0.0817 7.2650 21 6 0.3533 -1.0056 8.3729 22 6 1.2145 1.2027 7.5553 23 6 1.2513 1.7009 8.9770 24 6 1.6099 2.0276 6.4960 25 6 2.0591 3.3650 6.7417 26 7 2.4182 4.4249 6.9368 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8897 -0.4111 -2.6822 33 1 2.3994 0.4970 2.6010 34 1 0.7285 1.0884 2.4377 35 1 -0.7683 -1.9142 5.4695 36 1 0.8169 -2.2702 4.7422 37 1 0.5462 -2.5679 6.4761 38 1 1.2130 -1.5694 8.7351 39 1 -0.0673 -0.4196 9.1902 40 1 -0.4008 -1.6958 7.9951 41 1 2.2249 1.4800 9.4144 42 1 1.0833 2.7778 8.9891 43 1 0.4721 1.2051 9.5560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:45 Heat of formation + Delta-G solvation = 6.117650 kcal Electronic energy + Delta-G solvation = -25642.806134 eV Core-core repulsion = 22006.682031 eV Total energy + Delta-G solvation = -3636.124103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65166 -40.49488 -37.93473 -37.03240 -35.72342 -34.65005 -34.15431 -31.34634 -30.98274 -29.66158 -29.59925 -27.53104 -26.68447 -24.23458 -23.96693 -22.46649 -21.18675 -19.54875 -18.83825 -18.64486 -18.02014 -17.87543 -16.98352 -16.44848 -16.09134 -15.99512 -15.51267 -14.82082 -14.77150 -14.67578 -14.63989 -14.37139 -14.29200 -14.18463 -14.08301 -13.90339 -13.70306 -13.58599 -13.50717 -13.33046 -13.14427 -13.08296 -12.90276 -12.71889 -12.57669 -12.32025 -12.28019 -12.13215 -11.86064 -11.59899 -10.93876 -10.72518 -10.54966 -10.52273 -10.43564 -9.55926 -8.72759 -8.39949 -6.10177 -0.58730 0.00225 0.24372 0.97223 1.36369 1.40994 1.49761 1.51573 1.77817 1.87912 2.26799 2.59386 2.65614 2.94412 2.96321 3.35788 3.52625 3.74409 3.82634 3.98414 4.05069 4.12324 4.19945 4.42211 4.44127 4.49886 4.61211 4.64253 4.81781 4.83784 4.86139 4.92429 4.99237 5.01341 5.06486 5.15388 5.28408 5.28874 5.32131 5.42031 5.54497 5.68715 6.12248 6.27309 6.43167 6.64277 7.07704 7.34791 7.92514 8.62214 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003076 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.391737 B = 9099.290048 C =10318.470124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 N -0.438 5.438 4 C -0.348 4.348 5 H 0.065 0.935 6 C 0.009 3.991 7 N -0.882 5.882 8 Si 0.983 3.017 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.262 1.262 12 C 0.448 3.552 13 O -0.620 6.620 14 C -0.094 4.094 15 S -0.039 6.039 16 C 0.145 3.855 17 N -0.507 5.507 18 C 0.169 3.831 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.110 4.110 22 C 0.026 3.974 23 C -0.124 4.124 24 C -0.094 4.094 25 C 0.274 3.726 26 N -0.441 5.441 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.277 0.723 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -12.759 21.331 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.156 5.156 4 C -0.476 4.476 5 H 0.083 0.917 6 C -0.195 4.195 7 N -0.519 5.519 8 Si 0.806 3.194 9 H -0.205 1.205 10 H -0.192 1.192 11 H -0.187 1.187 12 C 0.237 3.763 13 O -0.507 6.507 14 C -0.245 4.245 15 S 0.204 5.796 16 C -0.106 4.106 17 N -0.221 5.221 18 C 0.026 3.974 19 C -0.167 4.167 20 C -0.146 4.146 21 C -0.167 4.167 22 C 0.015 3.985 23 C -0.180 4.180 24 C -0.108 4.108 25 C -0.041 4.041 26 N -0.117 5.117 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.026 -9.864 20.437 24.422 hybrid contribution -0.051 -0.463 -0.708 0.848 sum -9.076 -10.327 19.728 24.047 Atomic orbital electron populations 1.22087 0.95033 1.02778 1.01146 1.21791 0.94312 0.82947 1.04077 1.43714 1.54754 1.13205 1.03956 1.19406 1.42630 0.95080 0.90437 0.91717 1.26078 0.93117 0.96477 1.03817 1.69966 1.31661 1.15709 1.34555 0.85172 0.79157 0.78059 0.77029 1.20485 1.19233 1.18713 1.20320 0.82776 0.87748 0.85500 1.90525 1.52637 1.20477 1.87101 1.23450 1.07700 1.00917 0.92482 1.86813 1.79542 1.17503 0.95736 1.23377 0.97412 0.95037 0.94793 1.68073 1.14970 1.02418 1.36624 1.22116 0.89985 0.96831 0.88429 1.21020 1.02983 0.88074 1.04583 1.20815 1.02376 0.94865 0.96545 1.20976 1.02900 0.97949 0.94839 1.20450 0.90445 0.92090 0.95481 1.21109 1.05701 1.01656 0.89546 1.16437 1.12134 0.88664 0.93561 1.25428 0.93033 0.92569 0.93043 1.81213 1.10059 1.12017 1.08452 0.89176 0.93136 0.93892 0.88680 0.91540 0.91311 0.86400 0.85624 0.88142 0.90777 0.86942 0.88949 0.89166 0.88907 0.88170 0.92171 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 10.15 71.98 0.73 -4.46 16 2 C 0.09 3.90 5.43 86.38 0.47 4.37 16 3 N -0.44 -22.85 2.56 -635.53 -1.63 -24.47 16 4 C -0.35 -19.98 8.98 84.04 0.75 -19.22 16 5 H 0.06 4.01 7.70 -2.91 -0.02 3.98 16 6 C 0.01 0.46 4.92 84.93 0.42 0.87 16 7 N -0.88 -46.87 11.33 21.66 0.25 -46.62 16 8 Si 0.98 42.17 29.61 68.60 2.03 44.20 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 C 0.45 23.26 7.61 87.66 0.67 23.93 16 13 O -0.62 -37.50 15.69 -3.08 -0.05 -37.55 16 14 C -0.09 -3.77 3.93 71.24 0.28 -3.49 16 15 S -0.04 -1.56 20.19 -56.49 -1.14 -2.70 16 16 C 0.14 4.45 7.01 85.18 0.60 5.04 16 17 N -0.51 -13.56 9.03 -179.00 -1.62 -15.17 16 18 C 0.17 3.07 6.78 42.58 0.29 3.35 16 19 C -0.11 -1.15 9.33 71.24 0.66 -0.49 16 20 C -0.14 -1.94 5.89 -19.80 -0.12 -2.06 16 21 C -0.11 -0.46 8.80 71.24 0.63 0.17 16 22 C 0.03 0.45 5.95 -19.41 -0.12 0.34 16 23 C -0.12 -1.34 9.28 71.23 0.66 -0.68 16 24 C -0.09 -2.49 5.77 -21.03 -0.12 -2.61 16 25 C 0.27 8.38 12.92 88.33 1.14 9.52 16 26 N -0.44 -15.10 18.54 19.00 0.35 -14.74 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.05 1.62 6.59 -2.39 -0.02 1.61 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 4.47 5.34 -2.39 -0.01 4.45 16 31 H 0.07 2.55 6.66 -2.39 -0.02 2.53 16 32 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.12 4.45 7.39 -2.40 -0.02 4.43 16 34 H 0.13 4.48 6.52 -2.40 -0.02 4.46 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.11 0.48 6.67 -2.39 -0.02 0.47 16 38 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.09 0.13 6.05 -2.39 -0.01 0.11 16 40 H 0.09 0.13 6.70 -2.39 -0.02 0.12 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.84 7.19 -2.39 -0.02 0.82 16 43 H 0.12 0.51 6.06 -2.39 -0.01 0.49 16 Total: -1.00 -77.34 371.06 6.20 -71.14 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.06 Total: 11.34 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.95 Total: 14.58 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -2.64 Total: -101.01 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.05 Total: -37.55 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -1.14 Total: -2.70 kcal Total: -77.34 6.20 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.257 kcal (2) G-P(sol) polarization free energy of solvation -77.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds