Wall clock time and date at job start Tue Mar 31 2020 19:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47188 * 2 1 4 4 C 1.37105 * 120.00179 * 262.97495 * 3 2 1 5 5 H 1.07998 * 119.99884 * 142.21316 * 4 3 2 6 6 C 1.38950 * 119.99528 * 322.21997 * 4 3 2 7 7 N 1.31415 * 119.99879 * 157.13211 * 6 4 3 8 8 Si 1.86794 * 120.00093 * 337.12577 * 6 4 3 9 9 H 1.48498 * 109.47410 * 95.21043 * 8 6 4 10 10 H 1.48506 * 109.47227 * 215.20932 * 8 6 4 11 11 H 1.48498 * 109.47334 * 335.20856 * 8 6 4 12 12 C 1.34783 * 120.00404 * 82.97747 * 3 2 1 13 13 O 1.21291 * 120.00346 * 179.97438 * 12 3 2 14 14 C 1.50697 * 119.99679 * 0.02562 * 12 3 2 15 15 N 1.46499 * 109.47039 * 180.02562 * 14 12 3 16 16 C 1.36034 * 126.35017 * 269.95477 * 15 14 12 17 17 C 1.50703 * 124.94814 * 0.02562 * 16 15 14 18 18 S 1.81404 * 109.46985 * 89.99737 * 17 16 15 19 19 C 1.81405 * 102.99674 * 179.97438 * 18 17 16 20 20 N 1.30110 * 110.10126 * 180.02562 * 16 15 14 21 21 C 1.35778 * 109.64065 * 359.97438 * 20 16 15 22 22 C 1.39745 * 133.59366 * 179.97438 * 21 20 16 23 23 C 1.36607 * 119.88117 * 180.02562 * 22 21 20 24 24 C 1.38776 * 120.67285 * 359.97412 * 23 22 21 25 25 C 1.37854 * 120.44642 * 0.04923 * 24 23 22 26 26 C 1.38059 * 126.34826 * 89.99808 * 15 14 12 27 27 H 1.09000 * 109.47056 * 300.00378 * 1 2 3 28 28 H 1.08998 * 109.46633 * 60.00217 * 1 2 3 29 29 H 1.08998 * 109.47091 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47056 * 239.99622 * 2 1 3 31 31 H 1.09007 * 109.46420 * 119.99857 * 2 1 3 32 32 H 0.96996 * 119.99898 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47652 * 59.99550 * 14 12 3 34 34 H 1.09001 * 109.47068 * 299.99936 * 14 12 3 35 35 H 1.08993 * 109.47337 * 210.00094 * 17 16 15 36 36 H 1.09004 * 109.47123 * 330.00211 * 17 16 15 37 37 H 1.08993 * 109.47438 * 299.99983 * 19 18 17 38 38 H 1.08998 * 109.47108 * 60.00753 * 19 18 17 39 39 H 1.09002 * 109.46775 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.06236 * 0.30498 * 22 21 20 41 41 H 1.07998 * 119.66141 * 179.97438 * 23 22 21 42 42 H 1.07990 * 119.77207 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.14987 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3838 1.9791 -1.1784 5 1 2.1622 3.0227 -1.3458 6 6 3.0391 1.2421 -2.1573 7 7 2.9965 1.6317 -3.4117 8 14 3.9806 -0.3021 -1.6903 9 1 3.1113 -1.4901 -1.8856 10 1 5.1867 -0.4250 -2.5481 11 1 4.3926 -0.2190 -0.2661 12 6 2.1085 2.0641 1.1585 13 8 2.5133 3.2075 1.1585 14 6 1.7074 1.4068 2.4538 15 7 1.8958 2.3500 3.5589 16 6 3.0246 2.5068 4.3016 17 6 4.2984 1.7241 4.1120 18 16 5.3708 2.5907 2.9332 19 6 6.8276 1.5137 2.8389 20 7 2.8443 3.4310 5.1994 21 6 1.5864 3.9310 5.0935 22 6 0.8793 4.9159 5.7884 23 6 -0.4098 5.2027 5.4388 24 6 -1.0282 4.5255 4.3973 25 6 -0.3501 3.5498 3.6982 26 6 0.9602 3.2439 4.0401 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.4542 1.1174 -4.0950 33 1 2.3249 0.5240 2.6198 34 1 0.6592 1.1123 2.4026 35 1 4.8121 1.6288 5.0685 36 1 4.0615 0.7324 3.7264 37 1 7.2779 1.4242 3.8274 38 1 6.5278 0.5272 2.4854 39 1 7.5521 1.9426 2.1466 40 1 1.3525 5.4525 6.5974 41 1 -0.9531 5.9642 5.9785 42 1 -2.0477 4.7642 4.1329 43 1 -0.8362 3.0255 2.8888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:41 Heat of formation + Delta-G solvation = 63.909366 kcal Electronic energy + Delta-G solvation = -27083.424423 eV Core-core repulsion = 23449.806357 eV Total energy + Delta-G solvation = -3633.618066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.05792 -38.93000 -37.25433 -35.35913 -33.88979 -32.35695 -31.51395 -30.33363 -29.87579 -28.90663 -27.89042 -27.39090 -24.60220 -23.08645 -22.04099 -22.01644 -20.46480 -18.99458 -17.32735 -17.18686 -16.83609 -16.58542 -16.09582 -15.68432 -15.32094 -14.86961 -14.58859 -14.17903 -13.99116 -13.75548 -13.69467 -13.59117 -13.47476 -13.34773 -12.97328 -12.79880 -12.50100 -12.44640 -12.27160 -11.87402 -11.70673 -11.60073 -11.39852 -11.29557 -11.17037 -10.79533 -10.35984 -10.25286 -9.97219 -9.82798 -9.77037 -9.17010 -8.71352 -8.07131 -7.87696 -7.84518 -7.41614 -6.46683 -4.02966 0.91331 1.64862 1.77405 2.62746 2.66923 2.93624 3.13060 3.13406 3.17421 3.52303 4.01109 4.06610 4.09386 4.24207 4.51723 4.77648 4.86059 4.88985 5.04521 5.10051 5.15681 5.17054 5.20700 5.25853 5.32570 5.41060 5.54734 5.58582 5.68396 5.72752 5.74693 5.79000 5.86950 6.05935 6.24260 6.27175 6.57503 6.61603 6.64086 6.69696 7.02339 7.19671 7.46253 8.03017 8.18700 8.40702 8.87841 9.22433 9.63304 10.65325 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.005113 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.388987 B = 5475.409654 C = 7013.550141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 N -0.460 5.460 4 C -0.309 4.309 5 H 0.105 0.895 6 C 0.064 3.936 7 N -0.860 5.860 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.449 3.551 13 O -0.528 6.528 14 C 0.085 3.915 15 N -0.454 5.454 16 C 0.306 3.694 17 C -0.023 4.023 18 S -0.185 6.185 19 C -0.138 4.138 20 N -0.481 5.481 21 C 0.048 3.952 22 C -0.066 4.066 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.102 4.102 26 C 0.066 3.934 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.274 0.726 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 -5.243 15.009 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.042 4.042 3 N -0.183 5.183 4 C -0.436 4.436 5 H 0.123 0.877 6 C -0.143 4.143 7 N -0.496 5.496 8 Si 0.698 3.302 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.234 3.766 13 O -0.406 6.406 14 C -0.041 4.041 15 N -0.142 5.142 16 C 0.041 3.959 17 C -0.172 4.172 18 S 0.040 5.960 19 C -0.307 4.307 20 N -0.202 5.202 21 C -0.071 4.071 22 C -0.085 4.085 23 C -0.153 4.153 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.044 4.044 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.314 -3.566 14.734 15.335 hybrid contribution 0.255 -2.496 -0.188 2.516 sum -2.059 -6.062 14.547 15.893 Atomic orbital electron populations 1.22162 0.96168 1.01240 1.02644 1.21857 0.94746 0.85893 1.01663 1.43695 1.57375 1.11296 1.05973 1.18971 1.37065 0.98552 0.89047 0.87748 1.25330 0.96158 0.98067 0.94706 1.69759 1.39929 1.40144 0.99745 0.87054 0.80535 0.82823 0.79834 1.20312 1.21249 1.18681 1.20136 0.83725 0.88753 0.83949 1.90670 1.47268 1.17354 1.85314 1.21934 1.04250 0.91529 0.86415 1.44663 1.10983 1.31426 1.27145 1.22151 0.87791 0.96074 0.89922 1.21703 0.92820 0.99123 1.03577 1.88179 1.16586 1.34136 1.57107 1.23493 0.99298 1.02659 1.05239 1.70336 1.16084 1.10294 1.23506 1.18978 0.90978 0.99629 0.97553 1.19935 0.93640 0.95710 0.99249 1.20564 0.94810 1.01147 0.98770 1.20810 0.99735 0.96006 0.96090 1.19973 0.91198 1.00085 1.01011 1.18788 0.92811 0.94705 0.98063 0.93365 0.91088 0.92375 0.90192 0.92665 0.91548 0.87686 0.87436 0.86796 0.88623 0.90605 0.90624 0.87754 0.85638 0.85646 0.85500 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.11 37.16 0.38 -2.07 16 2 C 0.08 1.48 4.46 -4.05 -0.02 1.46 16 3 N -0.46 -10.37 2.18 -114.81 -0.25 -10.62 16 4 C -0.31 -8.40 9.35 -14.93 -0.14 -8.54 16 5 H 0.10 3.26 7.92 -52.49 -0.42 2.85 16 6 C 0.06 1.69 5.24 -17.47 -0.09 1.60 16 7 N -0.86 -24.18 13.96 55.50 0.77 -23.40 16 8 Si 0.87 19.48 25.11 -169.99 -4.27 15.21 16 9 H -0.28 -5.70 6.67 56.52 0.38 -5.32 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.45 9.84 7.64 -10.98 -0.08 9.76 16 13 O -0.53 -13.99 16.30 5.55 0.09 -13.90 16 14 C 0.09 1.41 5.02 -5.20 -0.03 1.38 16 15 N -0.45 -8.07 2.29 -112.44 -0.26 -8.33 16 16 C 0.31 5.39 7.11 -154.83 -1.10 4.29 16 17 C -0.02 -0.33 6.23 36.01 0.22 -0.11 16 18 S -0.18 -3.20 22.36 -107.50 -2.40 -5.60 16 19 C -0.14 -1.68 10.76 101.05 1.09 -0.59 16 20 N -0.48 -8.97 11.27 -8.24 -0.09 -9.07 16 21 C 0.05 0.85 7.23 -84.70 -0.61 0.24 16 22 C -0.07 -0.96 10.05 -39.61 -0.40 -1.36 16 23 C -0.13 -1.65 9.96 -39.97 -0.40 -2.05 16 24 C -0.11 -1.37 10.03 -39.52 -0.40 -1.76 16 25 C -0.10 -1.56 10.05 -39.50 -0.40 -1.96 16 26 C 0.07 1.18 6.87 -83.99 -0.58 0.60 16 27 H 0.05 0.65 6.39 -51.93 -0.33 0.31 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.57 3.72 -51.93 -0.19 1.37 16 31 H 0.06 0.81 6.74 -51.93 -0.35 0.46 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.11 1.45 6.28 -51.93 -0.33 1.12 16 34 H 0.11 1.50 6.35 -51.93 -0.33 1.17 16 35 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 1.18 7.01 -51.92 -0.36 0.81 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -34.49 368.28 -9.11 -43.60 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.70 Total: 5.68 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.55 Total: 0.89 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.17 Total: -51.42 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.27 Total: 15.21 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.40 Total: -5.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.49 -9.11 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.507 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds