Wall clock time and date at job start Tue Mar 31 2020 19:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47188 * 2 1 4 4 C 1.37105 * 120.00179 * 262.97495 * 3 2 1 5 5 H 1.07998 * 119.99884 * 142.21316 * 4 3 2 6 6 C 1.38950 * 119.99528 * 322.21997 * 4 3 2 7 7 N 1.31415 * 119.99879 * 157.13211 * 6 4 3 8 8 Si 1.86794 * 120.00093 * 337.12577 * 6 4 3 9 9 H 1.48498 * 109.47410 * 95.21043 * 8 6 4 10 10 H 1.48506 * 109.47227 * 215.20932 * 8 6 4 11 11 H 1.48498 * 109.47334 * 335.20856 * 8 6 4 12 12 C 1.34783 * 120.00404 * 82.97747 * 3 2 1 13 13 O 1.21291 * 120.00346 * 179.97438 * 12 3 2 14 14 C 1.50697 * 119.99679 * 0.02562 * 12 3 2 15 15 N 1.46499 * 109.47039 * 180.02562 * 14 12 3 16 16 C 1.36034 * 126.35017 * 269.95477 * 15 14 12 17 17 C 1.50703 * 124.94814 * 0.02562 * 16 15 14 18 18 S 1.81404 * 109.46985 * 89.99737 * 17 16 15 19 19 C 1.81405 * 102.99674 * 179.97438 * 18 17 16 20 20 N 1.30110 * 110.10126 * 180.02562 * 16 15 14 21 21 C 1.35778 * 109.64065 * 359.97438 * 20 16 15 22 22 C 1.39745 * 133.59366 * 179.97438 * 21 20 16 23 23 C 1.36607 * 119.88117 * 180.02562 * 22 21 20 24 24 C 1.38776 * 120.67285 * 359.97412 * 23 22 21 25 25 C 1.37854 * 120.44642 * 0.04923 * 24 23 22 26 26 C 1.38059 * 126.34826 * 89.99808 * 15 14 12 27 27 H 1.09000 * 109.47056 * 300.00378 * 1 2 3 28 28 H 1.08998 * 109.46633 * 60.00217 * 1 2 3 29 29 H 1.08998 * 109.47091 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47056 * 239.99622 * 2 1 3 31 31 H 1.09007 * 109.46420 * 119.99857 * 2 1 3 32 32 H 0.96996 * 119.99898 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47652 * 59.99550 * 14 12 3 34 34 H 1.09001 * 109.47068 * 299.99936 * 14 12 3 35 35 H 1.08993 * 109.47337 * 210.00094 * 17 16 15 36 36 H 1.09004 * 109.47123 * 330.00211 * 17 16 15 37 37 H 1.08993 * 109.47438 * 299.99983 * 19 18 17 38 38 H 1.08998 * 109.47108 * 60.00753 * 19 18 17 39 39 H 1.09002 * 109.46775 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.06236 * 0.30498 * 22 21 20 41 41 H 1.07998 * 119.66141 * 179.97438 * 23 22 21 42 42 H 1.07990 * 119.77207 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.14987 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3838 1.9791 -1.1784 5 1 2.1622 3.0227 -1.3458 6 6 3.0391 1.2421 -2.1573 7 7 2.9965 1.6317 -3.4117 8 14 3.9806 -0.3021 -1.6903 9 1 3.1113 -1.4901 -1.8856 10 1 5.1867 -0.4250 -2.5481 11 1 4.3926 -0.2190 -0.2661 12 6 2.1085 2.0641 1.1585 13 8 2.5133 3.2075 1.1585 14 6 1.7074 1.4068 2.4538 15 7 1.8958 2.3500 3.5589 16 6 3.0246 2.5068 4.3016 17 6 4.2984 1.7241 4.1120 18 16 5.3708 2.5907 2.9332 19 6 6.8276 1.5137 2.8389 20 7 2.8443 3.4310 5.1994 21 6 1.5864 3.9310 5.0935 22 6 0.8793 4.9159 5.7884 23 6 -0.4098 5.2027 5.4388 24 6 -1.0282 4.5255 4.3973 25 6 -0.3501 3.5498 3.6982 26 6 0.9602 3.2439 4.0401 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.4542 1.1174 -4.0950 33 1 2.3249 0.5240 2.6198 34 1 0.6592 1.1123 2.4026 35 1 4.8121 1.6288 5.0685 36 1 4.0615 0.7324 3.7264 37 1 7.2779 1.4242 3.8274 38 1 6.5278 0.5272 2.4854 39 1 7.5521 1.9426 2.1466 40 1 1.3525 5.4525 6.5974 41 1 -0.9531 5.9642 5.9785 42 1 -2.0477 4.7642 4.1329 43 1 -0.8362 3.0255 2.8888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:40 Heat of formation + Delta-G solvation = 42.002101 kcal Electronic energy + Delta-G solvation = -27084.374394 eV Core-core repulsion = 23449.806357 eV Total energy + Delta-G solvation = -3634.568037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.26941 -40.59839 -38.37420 -37.07781 -35.24468 -34.28168 -32.63546 -31.52069 -31.33931 -29.87927 -29.31102 -28.50923 -26.41796 -24.47929 -23.20059 -23.16806 -21.89977 -20.50069 -18.91445 -18.46726 -18.34114 -18.01088 -17.39590 -17.38771 -16.49380 -16.24843 -16.00246 -15.49283 -15.24472 -15.06100 -14.85412 -14.78235 -14.71506 -14.66671 -14.42814 -14.15512 -14.00819 -13.76860 -13.36477 -13.18380 -13.02741 -12.83449 -12.72790 -12.55593 -12.47044 -12.39156 -11.94899 -11.68142 -11.60982 -11.05538 -11.03561 -10.94262 -10.41730 -9.71998 -9.26137 -9.06161 -8.71117 -8.50177 -6.11502 -0.24597 0.51867 0.64890 1.18679 1.32270 1.44613 1.45509 1.56390 1.87962 1.93304 2.18721 2.64009 2.88943 2.95224 2.96545 3.34127 3.62005 3.73630 3.78017 3.89714 4.06976 4.10753 4.13377 4.26535 4.29494 4.33076 4.38430 4.45343 4.47119 4.49803 4.64440 4.83573 4.84143 4.92935 4.96209 5.18173 5.36138 5.46706 5.53608 5.56912 5.57828 5.95734 5.99969 6.05805 6.55506 6.79091 6.95756 7.28192 7.84106 8.67357 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.005113 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.388987 B = 5475.409654 C = 7013.550141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.071 3.929 3 N -0.469 5.469 4 C -0.322 4.322 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.913 5.913 8 Si 0.944 3.056 9 H -0.238 1.238 10 H -0.294 1.294 11 H -0.248 1.248 12 C 0.449 3.551 13 O -0.585 6.585 14 C 0.095 3.905 15 N -0.462 5.462 16 C 0.292 3.708 17 C -0.002 4.002 18 S -0.297 6.297 19 C -0.112 4.112 20 N -0.506 5.506 21 C 0.014 3.986 22 C -0.081 4.081 23 C -0.122 4.122 24 C -0.097 4.097 25 C -0.124 4.124 26 C 0.040 3.960 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.278 0.722 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -8.468 17.654 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.051 4.051 3 N -0.192 5.192 4 C -0.450 4.450 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.550 5.550 8 Si 0.766 3.234 9 H -0.163 1.163 10 H -0.221 1.221 11 H -0.172 1.172 12 C 0.236 3.764 13 O -0.467 6.467 14 C -0.030 4.030 15 N -0.150 5.150 16 C 0.027 3.973 17 C -0.151 4.151 18 S -0.073 6.073 19 C -0.280 4.280 20 N -0.227 5.227 21 C -0.105 4.105 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.069 4.069 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.157 0.843 41 H 0.183 0.817 42 H 0.180 0.820 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.273 -6.818 17.401 18.974 hybrid contribution 0.445 -1.292 -0.976 1.679 sum -2.828 -8.110 16.425 18.535 Atomic orbital electron populations 1.22122 0.93947 1.03640 1.01911 1.22180 0.96747 0.83008 1.03130 1.43784 1.57684 1.13115 1.04658 1.18456 1.38606 0.96279 0.91665 0.94658 1.26140 0.96338 1.02412 0.93958 1.69892 1.41251 1.42697 1.01183 0.85905 0.78572 0.79080 0.79799 1.16273 1.22146 1.17154 1.21020 0.81929 0.87935 0.85490 1.90647 1.49375 1.20130 1.86517 1.21946 1.06671 0.91551 0.82841 1.44744 1.11178 1.31894 1.27217 1.22694 0.88623 0.96239 0.89769 1.21774 0.90892 0.98896 1.03541 1.88563 1.21140 1.38507 1.59086 1.23491 0.96095 1.01353 1.07085 1.70280 1.16777 1.10963 1.24706 1.19497 0.91199 1.00993 0.98779 1.20314 0.94623 0.95390 0.99692 1.21043 0.93972 1.00992 0.98174 1.21313 1.01029 0.94288 0.94986 1.20296 0.90810 1.01422 1.02001 1.19218 0.93824 0.95284 0.98578 0.91752 0.94276 0.88293 0.91595 0.88005 0.91206 0.84031 0.84375 0.84439 0.85956 0.87732 0.89387 0.87744 0.84279 0.81739 0.82006 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.11 71.98 0.73 -3.52 16 2 C 0.07 2.35 4.46 86.38 0.39 2.74 16 3 N -0.47 -21.14 2.18 -635.53 -1.39 -22.53 16 4 C -0.32 -18.44 9.35 84.04 0.79 -17.66 16 5 H 0.04 2.45 7.92 -2.91 -0.02 2.42 16 6 C 0.01 0.74 5.24 84.93 0.45 1.18 16 7 N -0.91 -53.83 13.96 21.66 0.30 -53.53 16 8 Si 0.94 39.64 25.11 68.60 1.72 41.36 16 9 H -0.24 -8.54 6.67 99.48 0.66 -7.87 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 12 C 0.45 19.71 7.64 87.66 0.67 20.38 16 13 O -0.59 -32.53 16.30 -3.07 -0.05 -32.58 16 14 C 0.10 2.93 5.02 85.63 0.43 3.36 16 15 N -0.46 -15.95 2.29 -509.65 -1.17 -17.12 16 16 C 0.29 10.10 7.11 137.92 0.98 11.08 16 17 C 0.00 -0.07 6.23 71.24 0.44 0.38 16 18 S -0.30 -10.28 22.36 -56.49 -1.26 -11.54 16 19 C -0.11 -2.49 10.76 113.37 1.22 -1.27 16 20 N -0.51 -18.96 11.27 -179.97 -2.03 -20.99 16 21 C 0.01 0.49 7.23 39.45 0.29 0.77 16 22 C -0.08 -2.28 10.05 22.25 0.22 -2.06 16 23 C -0.12 -2.71 9.96 22.02 0.22 -2.49 16 24 C -0.10 -2.24 10.03 22.31 0.22 -2.01 16 25 C -0.12 -3.67 10.05 22.32 0.22 -3.44 16 26 C 0.04 1.42 6.87 38.86 0.27 1.68 16 27 H 0.06 1.50 6.39 -2.39 -0.02 1.49 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.36 3.72 -2.39 -0.01 2.35 16 31 H 0.10 2.41 6.74 -2.38 -0.02 2.39 16 32 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.14 3.25 6.28 -2.39 -0.01 3.23 16 34 H 0.14 3.36 6.35 -2.39 -0.02 3.34 16 35 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.12 2.58 7.01 -2.39 -0.02 2.56 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 40 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.16 2.54 8.06 -2.92 -0.02 2.52 16 43 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -85.89 368.28 4.64 -81.25 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.99 Total: 26.56 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 7.53 Total: 9.12 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.28 Total: -114.16 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.58 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.72 Total: 41.36 kcal Atomic # 16 Polarization: -10.28 SS G_CDS: -1.26 Total: -11.54 kcal Total: -85.89 4.64 -81.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.249 kcal (2) G-P(sol) polarization free energy of solvation -85.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds