Wall clock time and date at job start Tue Mar 31 2020 18:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47351 * 2 1 4 4 C 1.50696 * 109.47182 * 120.00463 * 2 1 3 5 5 O 1.21283 * 120.00343 * 114.29133 * 4 2 1 6 6 N 1.34782 * 119.99637 * 294.29371 * 4 2 1 7 7 C 1.46491 * 120.00143 * 355.24323 * 6 4 2 8 8 C 1.46500 * 119.99762 * 175.24640 * 6 4 2 9 9 C 1.50693 * 109.47266 * 89.99920 * 8 6 4 10 10 N 1.27937 * 124.23993 * 90.02519 * 9 8 6 11 11 C 1.34660 * 117.84449 * 179.97438 * 10 9 8 12 12 C 1.40974 * 129.68610 * 180.02562 * 11 10 9 13 13 C 1.36180 * 120.42430 * 180.02562 * 12 11 10 14 14 C 1.38783 * 120.77955 * 359.97438 * 13 12 11 15 15 C 1.37661 * 120.06817 * 0.02562 * 14 13 12 16 16 C 1.39333 * 119.95341 * 0.02562 * 15 14 13 17 17 S 1.70652 * 124.23957 * 269.99693 * 9 8 6 18 18 N 1.46506 * 109.47182 * 240.00160 * 2 1 3 19 19 C 1.46501 * 119.99773 * 300.00164 * 18 2 1 20 20 C 1.36929 * 119.99889 * 120.00117 * 18 2 1 21 21 H 1.08007 * 120.00418 * 21.32562 * 20 18 2 22 22 C 1.38820 * 120.00086 * 201.32734 * 20 18 2 23 23 N 1.31613 * 119.99594 * 14.60674 * 22 20 18 24 24 Si 1.86800 * 119.99980 * 194.60705 * 22 20 18 25 25 H 1.48501 * 109.46819 * 94.98318 * 24 22 20 26 26 H 1.48506 * 109.46940 * 214.97882 * 24 22 20 27 27 H 1.48496 * 109.47083 * 334.98232 * 24 22 20 28 28 H 1.08998 * 109.47191 * 290.98231 * 1 2 3 29 29 H 1.08999 * 109.47150 * 50.98672 * 1 2 3 30 30 H 1.09006 * 109.46748 * 170.97789 * 1 2 3 31 31 H 1.08999 * 109.47523 * 264.45671 * 7 6 4 32 32 H 1.09005 * 109.47285 * 24.45440 * 7 6 4 33 33 H 1.09003 * 109.47217 * 144.45416 * 7 6 4 34 34 H 1.09000 * 109.47081 * 329.99277 * 8 6 4 35 35 H 1.09003 * 109.46678 * 210.00062 * 8 6 4 36 36 H 1.08002 * 119.78590 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.60500 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.96987 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.01973 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47177 * 94.71533 * 19 18 2 41 41 H 1.09002 * 109.46779 * 214.71047 * 19 18 2 42 42 H 1.08997 * 109.47305 * 334.71132 * 19 18 2 43 43 H 0.96999 * 119.99997 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6419 -1.7534 1.1221 6 7 1.8042 -0.1869 2.4512 7 6 1.1605 1.1229 2.5778 8 6 2.2001 -0.9276 3.6515 9 6 3.6093 -0.5526 4.0313 10 7 3.9108 0.4094 4.8190 11 6 5.2149 0.6311 5.0707 12 6 5.8209 1.6072 5.8876 13 6 7.1763 1.6615 6.0074 14 6 7.9858 0.7600 5.3305 15 6 7.4218 -0.2039 4.5257 16 6 6.0368 -0.2740 4.3903 17 16 5.0031 -1.3583 3.4651 18 7 2.0184 -0.6906 -1.1962 19 6 1.6644 -2.0932 -1.4281 20 6 2.8056 -0.0251 -2.0975 21 1 3.3477 0.8579 -1.7926 22 6 2.9071 -0.4853 -3.4033 23 7 2.0452 -1.3700 -3.8580 24 14 4.2667 0.1512 -4.5149 25 1 5.4200 -0.7833 -4.4711 26 1 3.7618 0.2492 -5.9081 27 1 4.6991 1.4933 -4.0494 28 1 -0.3633 0.3680 0.9595 29 1 -0.3633 0.6469 -0.7985 30 1 -0.3633 -1.0150 -0.1612 31 1 1.9234 1.8939 2.6852 32 1 0.5649 1.3227 1.6870 33 1 0.5140 1.1267 3.4554 34 1 2.1504 -1.9979 3.4509 35 1 1.5248 -0.6798 4.4705 36 1 5.2062 2.3170 6.4212 37 1 7.6266 2.4151 6.6365 38 1 9.0593 0.8153 5.4346 39 1 8.0524 -0.9054 3.9997 40 1 0.7847 -2.1446 -2.0696 41 1 2.4975 -2.6028 -1.9123 42 1 1.4478 -2.5756 -0.4750 43 1 2.1162 -1.6919 -4.7702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:44 Heat of formation + Delta-G solvation = 69.374034 kcal Electronic energy + Delta-G solvation = -26298.272890 eV Core-core repulsion = 22664.891789 eV Total energy + Delta-G solvation = -3633.381101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.46257 -39.61366 -37.19941 -35.60898 -35.05224 -32.29696 -31.26310 -30.73796 -29.18059 -27.81206 -26.33241 -25.84320 -24.32726 -23.69359 -22.68953 -21.56209 -20.64663 -18.60593 -18.58130 -17.08602 -16.73395 -16.09795 -16.00303 -15.84746 -15.40120 -14.90837 -14.66921 -14.48256 -14.07870 -13.91437 -13.56514 -13.15737 -12.99891 -12.67150 -12.63866 -12.49604 -12.31986 -12.09520 -11.91333 -11.77728 -11.42206 -11.02225 -10.87276 -10.83002 -10.73307 -10.58981 -10.28050 -10.19264 -10.03215 -9.84296 -9.72273 -9.13833 -8.74846 -8.52585 -8.46806 -8.16300 -6.76558 -5.70279 -3.15363 0.30537 1.00074 1.27509 1.80749 2.18938 3.16584 3.28566 3.41268 3.47326 3.48079 3.59761 3.82922 4.48514 4.50714 4.70071 4.86703 4.89814 5.06675 5.15926 5.25958 5.33410 5.35194 5.46096 5.47197 5.53670 5.64199 5.70840 5.80975 5.90231 5.98039 5.99373 6.06800 6.18799 6.28753 6.46426 6.53396 6.64057 6.83462 7.03466 7.52439 7.56396 7.67186 7.78452 7.88017 8.37721 8.72096 9.24546 9.86236 10.34186 11.33801 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.003578 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.542274 B = 7823.553918 C = 8989.778351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 H 0.086 0.914 4 C 0.494 3.506 5 O -0.515 6.515 6 N -0.620 5.620 7 C 0.071 3.929 8 C 0.187 3.813 9 C 0.076 3.924 10 N -0.467 5.467 11 C 0.082 3.918 12 C -0.066 4.066 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.069 4.069 16 C -0.199 4.199 17 S 0.156 5.844 18 N -0.572 5.572 19 C 0.168 3.832 20 C -0.259 4.259 21 H 0.067 0.933 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.025 0.975 41 H 0.040 0.960 42 H 0.012 0.988 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 4.471 20.767 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.104 0.896 4 C 0.281 3.719 5 O -0.388 6.388 6 N -0.358 5.358 7 C -0.072 4.072 8 C 0.060 3.940 9 C -0.210 4.210 10 N -0.182 5.182 11 C -0.040 4.040 12 C -0.087 4.087 13 C -0.132 4.132 14 C -0.131 4.131 15 C -0.091 4.091 16 C -0.318 4.318 17 S 0.414 5.586 18 N -0.292 5.292 19 C 0.024 3.976 20 C -0.388 4.388 21 H 0.085 0.915 22 C -0.192 4.192 23 N -0.546 5.546 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.608 3.210 19.956 20.532 hybrid contribution 1.183 1.089 -0.053 1.609 sum 4.791 4.300 19.903 20.918 Atomic orbital electron populations 1.22432 0.96167 1.02823 1.00786 1.20205 0.93495 0.95872 0.85597 0.89640 1.23095 0.78418 0.85991 0.84415 1.90623 1.38970 1.23556 1.85625 1.48275 1.61738 1.20851 1.04900 1.22076 0.97612 0.83867 1.03609 1.19970 0.86583 0.98325 0.89150 1.27411 1.02357 0.94996 0.96189 1.66227 1.17646 1.17649 1.16632 1.19220 0.86795 0.97976 1.00004 1.20352 0.94595 0.96592 0.97192 1.20686 0.92971 0.99467 1.00068 1.21104 1.00111 0.94966 0.96898 1.20376 0.91058 0.99014 0.98672 1.24211 0.99782 1.02995 1.04808 1.84683 0.96679 1.31992 1.45231 1.43685 1.57771 1.08593 1.19110 1.20759 0.99269 0.82727 0.94829 1.19203 1.19864 1.10161 0.89615 0.91520 1.24919 0.98401 0.99428 0.96438 1.70109 1.34820 1.33865 1.15757 0.86241 0.81901 0.78436 0.79980 1.21473 1.21714 1.20455 0.92811 0.91547 0.92384 0.93135 0.88896 0.91531 0.87747 0.87779 0.85060 0.85012 0.84959 0.85269 0.95714 0.94126 0.96977 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.81 37.16 0.33 -2.44 16 2 C 0.16 3.29 2.29 -69.08 -0.16 3.13 16 3 H 0.09 1.69 7.45 -51.93 -0.39 1.30 16 4 C 0.49 9.44 6.78 -10.98 -0.07 9.37 16 5 O -0.51 -11.47 13.97 5.55 0.08 -11.39 16 6 N -0.62 -9.21 2.86 -182.96 -0.52 -9.73 16 7 C 0.07 0.83 9.78 59.84 0.59 1.41 16 8 C 0.19 2.48 5.97 -5.20 -0.03 2.45 16 9 C 0.08 1.13 6.87 -13.90 -0.10 1.03 16 10 N -0.47 -6.99 10.57 -9.08 -0.10 -7.09 16 11 C 0.08 1.17 7.00 -84.96 -0.59 0.57 16 12 C -0.07 -0.75 10.05 -39.29 -0.39 -1.14 16 13 C -0.11 -1.01 9.94 -40.12 -0.40 -1.41 16 14 C -0.11 -1.01 10.04 -39.59 -0.40 -1.41 16 15 C -0.07 -0.79 10.07 -39.38 -0.40 -1.19 16 16 C -0.20 -2.82 6.56 -38.55 -0.25 -3.07 16 17 S 0.16 2.40 23.11 -107.50 -2.48 -0.09 16 18 N -0.57 -14.71 2.63 -174.80 -0.46 -15.17 16 19 C 0.17 4.41 7.31 59.85 0.44 4.85 16 20 C -0.26 -7.26 9.60 -15.06 -0.14 -7.41 16 21 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 22 C 0.01 0.20 5.07 -17.43 -0.09 0.11 16 23 N -0.90 -26.60 10.70 55.49 0.59 -26.01 16 24 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.05 0.71 5.39 -51.93 -0.28 0.43 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.05 4.10 -51.93 -0.21 0.83 16 33 H 0.07 0.60 7.97 -51.93 -0.41 0.19 16 34 H 0.10 1.41 7.49 -51.93 -0.39 1.02 16 35 H 0.10 1.08 7.95 -51.93 -0.41 0.67 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.02 0.68 7.40 -51.93 -0.38 0.29 16 41 H 0.04 1.16 7.24 -51.93 -0.38 0.79 16 42 H 0.01 0.29 6.24 -51.93 -0.32 -0.03 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -34.10 364.12 -9.75 -43.85 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.64 Total: -1.98 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.68 Total: 4.86 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.48 Total: -58.00 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.48 Total: -0.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.10 -9.75 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.228 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds