Wall clock time and date at job start Tue Mar 31 2020 18:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47351 * 2 1 4 4 C 1.50696 * 109.47182 * 120.00463 * 2 1 3 5 5 O 1.21283 * 120.00343 * 114.29133 * 4 2 1 6 6 N 1.34782 * 119.99637 * 294.29371 * 4 2 1 7 7 C 1.46491 * 120.00143 * 355.24323 * 6 4 2 8 8 C 1.46500 * 119.99762 * 175.24640 * 6 4 2 9 9 C 1.50693 * 109.47266 * 89.99920 * 8 6 4 10 10 N 1.27937 * 124.23993 * 90.02519 * 9 8 6 11 11 C 1.34660 * 117.84449 * 179.97438 * 10 9 8 12 12 C 1.40974 * 129.68610 * 180.02562 * 11 10 9 13 13 C 1.36180 * 120.42430 * 180.02562 * 12 11 10 14 14 C 1.38783 * 120.77955 * 359.97438 * 13 12 11 15 15 C 1.37661 * 120.06817 * 0.02562 * 14 13 12 16 16 C 1.39333 * 119.95341 * 0.02562 * 15 14 13 17 17 S 1.70652 * 124.23957 * 269.99693 * 9 8 6 18 18 N 1.46506 * 109.47182 * 240.00160 * 2 1 3 19 19 C 1.46501 * 119.99773 * 300.00164 * 18 2 1 20 20 C 1.36929 * 119.99889 * 120.00117 * 18 2 1 21 21 H 1.08007 * 120.00418 * 21.32562 * 20 18 2 22 22 C 1.38820 * 120.00086 * 201.32734 * 20 18 2 23 23 N 1.31613 * 119.99594 * 14.60674 * 22 20 18 24 24 Si 1.86800 * 119.99980 * 194.60705 * 22 20 18 25 25 H 1.48501 * 109.46819 * 94.98318 * 24 22 20 26 26 H 1.48506 * 109.46940 * 214.97882 * 24 22 20 27 27 H 1.48496 * 109.47083 * 334.98232 * 24 22 20 28 28 H 1.08998 * 109.47191 * 290.98231 * 1 2 3 29 29 H 1.08999 * 109.47150 * 50.98672 * 1 2 3 30 30 H 1.09006 * 109.46748 * 170.97789 * 1 2 3 31 31 H 1.08999 * 109.47523 * 264.45671 * 7 6 4 32 32 H 1.09005 * 109.47285 * 24.45440 * 7 6 4 33 33 H 1.09003 * 109.47217 * 144.45416 * 7 6 4 34 34 H 1.09000 * 109.47081 * 329.99277 * 8 6 4 35 35 H 1.09003 * 109.46678 * 210.00062 * 8 6 4 36 36 H 1.08002 * 119.78590 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.60500 * 179.97438 * 13 12 11 38 38 H 1.07998 * 119.96987 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.01973 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47177 * 94.71533 * 19 18 2 41 41 H 1.09002 * 109.46779 * 214.71047 * 19 18 2 42 42 H 1.08997 * 109.47305 * 334.71132 * 19 18 2 43 43 H 0.96999 * 119.99997 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6419 -1.7534 1.1221 6 7 1.8042 -0.1869 2.4512 7 6 1.1605 1.1229 2.5778 8 6 2.2001 -0.9276 3.6515 9 6 3.6093 -0.5526 4.0313 10 7 3.9108 0.4094 4.8190 11 6 5.2149 0.6311 5.0707 12 6 5.8209 1.6072 5.8876 13 6 7.1763 1.6615 6.0074 14 6 7.9858 0.7600 5.3305 15 6 7.4218 -0.2039 4.5257 16 6 6.0368 -0.2740 4.3903 17 16 5.0031 -1.3583 3.4651 18 7 2.0184 -0.6906 -1.1962 19 6 1.6644 -2.0932 -1.4281 20 6 2.8056 -0.0251 -2.0975 21 1 3.3477 0.8579 -1.7926 22 6 2.9071 -0.4853 -3.4033 23 7 2.0452 -1.3700 -3.8580 24 14 4.2667 0.1512 -4.5149 25 1 5.4200 -0.7833 -4.4711 26 1 3.7618 0.2492 -5.9081 27 1 4.6991 1.4933 -4.0494 28 1 -0.3633 0.3680 0.9595 29 1 -0.3633 0.6469 -0.7985 30 1 -0.3633 -1.0150 -0.1612 31 1 1.9234 1.8939 2.6852 32 1 0.5649 1.3227 1.6870 33 1 0.5140 1.1267 3.4554 34 1 2.1504 -1.9979 3.4509 35 1 1.5248 -0.6798 4.4705 36 1 5.2062 2.3170 6.4212 37 1 7.6266 2.4151 6.6365 38 1 9.0593 0.8153 5.4346 39 1 8.0524 -0.9054 3.9997 40 1 0.7847 -2.1446 -2.0696 41 1 2.4975 -2.6028 -1.9123 42 1 1.4478 -2.5756 -0.4750 43 1 2.1162 -1.6919 -4.7702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:43 Heat of formation + Delta-G solvation = 48.050171 kcal Electronic energy + Delta-G solvation = -26299.197562 eV Core-core repulsion = 22664.891789 eV Total energy + Delta-G solvation = -3634.305773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48935 -40.98579 -38.24385 -37.30866 -36.45424 -34.10386 -32.10885 -32.05238 -30.74381 -28.88066 -28.07178 -27.42266 -25.66869 -25.06548 -23.75823 -22.93190 -21.86969 -19.99585 -19.59279 -18.96452 -17.93456 -17.50552 -17.17216 -17.04591 -16.74211 -16.30239 -15.86555 -15.82846 -15.44620 -14.98308 -14.87790 -14.75493 -14.46954 -14.26096 -13.86749 -13.64265 -13.39234 -13.27451 -13.10695 -12.89953 -12.84039 -12.75984 -12.66113 -12.36407 -12.30952 -12.15127 -12.00703 -11.84093 -11.81109 -11.16792 -10.85531 -10.81289 -10.50832 -9.83650 -9.65214 -9.17037 -8.82887 -7.84443 -5.31982 -0.67272 0.14114 0.23273 0.75442 1.20010 1.42887 1.46337 1.54194 1.70054 2.09440 2.49859 2.69225 2.81446 3.28951 3.57608 3.59270 3.72047 3.89483 4.06707 4.19492 4.26766 4.30346 4.31221 4.33939 4.42266 4.43971 4.64852 4.68338 4.77318 4.89656 4.90781 4.98347 5.08671 5.13667 5.23827 5.37707 5.38464 5.39121 5.49294 5.59002 5.68798 5.76083 6.24252 6.34653 6.49103 7.09870 7.26194 7.82128 8.25738 9.18664 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.003578 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.542274 B = 7823.553918 C = 8989.778351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.154 3.846 3 H 0.091 0.909 4 C 0.496 3.504 5 O -0.555 6.555 6 N -0.610 5.610 7 C 0.066 3.934 8 C 0.189 3.811 9 C 0.070 3.930 10 N -0.466 5.466 11 C 0.047 3.953 12 C -0.074 4.074 13 C -0.100 4.100 14 C -0.092 4.092 15 C -0.090 4.090 16 C -0.208 4.208 17 S 0.092 5.908 18 N -0.592 5.592 19 C 0.195 3.805 20 C -0.268 4.268 21 H 0.068 0.932 22 C -0.047 4.047 23 N -0.932 5.932 24 Si 0.967 3.033 25 H -0.293 1.293 26 H -0.289 1.289 27 H -0.266 1.266 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.005 0.995 41 H 0.002 0.998 42 H 0.024 0.976 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 7.144 23.531 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.109 0.891 4 C 0.283 3.717 5 O -0.431 6.431 6 N -0.345 5.345 7 C -0.076 4.076 8 C 0.062 3.938 9 C -0.216 4.216 10 N -0.181 5.181 11 C -0.073 4.073 12 C -0.095 4.095 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.327 4.327 17 S 0.349 5.651 18 N -0.313 5.313 19 C 0.050 3.950 20 C -0.398 4.398 21 H 0.086 0.914 22 C -0.243 4.243 23 N -0.578 5.578 24 Si 0.795 3.205 25 H -0.220 1.220 26 H -0.215 1.215 27 H -0.190 1.190 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.191 0.809 38 H 0.188 0.812 39 H 0.157 0.843 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.043 0.957 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.474 5.953 22.803 23.988 hybrid contribution 1.032 0.390 -0.672 1.292 sum 5.506 6.343 22.132 23.672 Atomic orbital electron populations 1.22297 0.93352 1.02047 1.03178 1.20483 0.95478 0.95618 0.84161 0.89140 1.22538 0.78181 0.85479 0.85506 1.90616 1.40770 1.25289 1.86422 1.48098 1.60680 1.21698 1.04070 1.22314 0.97902 0.81826 1.05511 1.20152 0.86703 0.97841 0.89115 1.27474 1.02174 0.95214 0.96702 1.66206 1.18369 1.17276 1.16252 1.19682 0.86641 0.99406 1.01582 1.20737 0.95917 0.96125 0.96715 1.21211 0.92059 0.99540 0.99263 1.21628 1.02112 0.93068 0.94521 1.20735 0.90199 1.00459 0.99922 1.24336 1.00801 1.02694 1.04903 1.84801 0.98951 1.34160 1.47205 1.43815 1.58395 1.08440 1.20646 1.20327 0.96720 0.83467 0.94438 1.19517 1.20020 1.10074 0.90190 0.91373 1.25687 1.00522 1.00161 0.97912 1.70251 1.36407 1.35364 1.15825 0.85264 0.78910 0.78235 0.78128 1.22032 1.21493 1.19009 0.88228 0.92112 0.93922 0.93408 0.88469 0.87860 0.88460 0.84183 0.83345 0.80931 0.81197 0.84313 0.97658 0.97871 0.95730 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 8.81 71.98 0.63 -4.30 16 2 C 0.15 6.25 2.29 44.24 0.10 6.35 16 3 H 0.09 3.53 7.45 -2.39 -0.02 3.51 16 4 C 0.50 18.94 6.78 87.65 0.59 19.53 16 5 O -0.55 -25.45 13.97 -3.04 -0.04 -25.50 16 6 N -0.61 -17.24 2.86 -851.15 -2.43 -19.67 16 7 C 0.07 1.33 9.78 127.77 1.25 2.58 16 8 C 0.19 4.81 5.97 85.63 0.51 5.32 16 9 C 0.07 2.08 6.87 88.67 0.61 2.68 16 10 N -0.47 -13.55 10.57 -182.51 -1.93 -15.48 16 11 C 0.05 1.30 7.00 39.79 0.28 1.58 16 12 C -0.07 -1.47 10.05 22.46 0.23 -1.24 16 13 C -0.10 -1.40 9.94 21.92 0.22 -1.18 16 14 C -0.09 -1.36 10.04 22.26 0.22 -1.14 16 15 C -0.09 -1.96 10.07 22.40 0.23 -1.74 16 16 C -0.21 -5.89 6.56 22.94 0.15 -5.74 16 17 S 0.09 2.95 23.11 -56.49 -1.31 1.64 16 18 N -0.59 -31.23 2.63 -706.96 -1.86 -33.09 16 19 C 0.20 10.69 7.31 127.77 0.93 11.63 16 20 C -0.27 -15.34 9.60 84.04 0.81 -14.53 16 21 H 0.07 3.78 7.82 -2.91 -0.02 3.76 16 22 C -0.05 -2.74 5.07 84.87 0.43 -2.31 16 23 N -0.93 -56.90 10.70 21.65 0.23 -56.67 16 24 Si 0.97 46.66 29.58 68.60 2.03 48.68 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.10 2.32 5.39 -2.39 -0.01 2.31 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.54 7.39 -2.38 -0.02 1.52 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.87 4.10 -2.38 -0.01 1.86 16 33 H 0.10 1.40 7.97 -2.39 -0.02 1.38 16 34 H 0.10 2.64 7.49 -2.39 -0.02 2.62 16 35 H 0.14 2.53 7.95 -2.39 -0.02 2.51 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.01 0.30 7.40 -2.39 -0.02 0.28 16 41 H 0.00 0.15 7.24 -2.39 -0.02 0.13 16 42 H 0.02 1.25 6.24 -2.39 -0.01 1.23 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -78.24 364.12 2.92 -75.32 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.03 Total: 7.27 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 7.19 Total: 17.48 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -5.99 Total: -124.90 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.04 Total: -25.50 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.31 Total: 1.64 kcal Total: -78.24 2.92 -75.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.369 kcal (2) G-P(sol) polarization free energy of solvation -78.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds