Wall clock time and date at job start Tue Mar 31 2020 18:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 C 1.50703 * 109.46875 * 240.00268 * 2 1 3 5 5 O 1.21277 * 119.99627 * 258.07292 * 4 2 1 6 6 N 1.34777 * 120.00215 * 78.07629 * 4 2 1 7 7 C 1.46502 * 119.99879 * 3.41263 * 6 4 2 8 8 C 1.46495 * 120.00051 * 183.41233 * 6 4 2 9 9 C 1.50701 * 109.46867 * 89.99675 * 8 6 4 10 10 N 1.27931 * 124.23428 * 89.70453 * 9 8 6 11 11 C 1.34665 * 117.84270 * 179.80802 * 10 9 8 12 12 C 1.40971 * 129.68483 * 180.17387 * 11 10 9 13 13 C 1.36178 * 120.42389 * 180.33722 * 12 11 10 14 14 C 1.38797 * 120.77642 * 359.96205 * 13 12 11 15 15 C 1.37652 * 120.06998 * 0.02562 * 14 13 12 16 16 C 1.39337 * 119.94907 * 359.97438 * 15 14 13 17 17 S 1.70647 * 124.23953 * 269.99679 * 9 8 6 18 18 N 1.46492 * 109.47227 * 119.99779 * 2 1 3 19 19 C 1.46501 * 120.00108 * 60.00294 * 18 2 1 20 20 C 1.36945 * 120.00300 * 239.99779 * 18 2 1 21 21 H 1.08002 * 119.99312 * 24.12289 * 20 18 2 22 22 C 1.38805 * 119.99945 * 204.11981 * 20 18 2 23 23 N 1.31623 * 120.00486 * 9.10988 * 22 20 18 24 24 Si 1.86809 * 119.99735 * 189.10181 * 22 20 18 25 25 H 1.48496 * 109.46741 * 90.00240 * 24 22 20 26 26 H 1.48498 * 109.47277 * 210.00351 * 24 22 20 27 27 H 1.48499 * 109.46855 * 330.00658 * 24 22 20 28 28 H 1.08999 * 109.47095 * 175.12660 * 1 2 3 29 29 H 1.08995 * 109.47392 * 55.12496 * 1 2 3 30 30 H 1.09000 * 109.46946 * 295.11729 * 1 2 3 31 31 H 1.09000 * 109.47297 * 84.56720 * 7 6 4 32 32 H 1.08996 * 109.47127 * 204.57363 * 7 6 4 33 33 H 1.08999 * 109.46912 * 324.56987 * 7 6 4 34 34 H 1.08996 * 109.47120 * 209.99983 * 8 6 4 35 35 H 1.09001 * 109.47174 * 330.00329 * 8 6 4 36 36 H 1.07995 * 119.78844 * 0.32457 * 12 11 10 37 37 H 1.07998 * 119.61132 * 179.97438 * 13 12 11 38 38 H 1.08005 * 119.96349 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.02552 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.47349 * 95.06140 * 19 18 2 41 41 H 1.08994 * 109.47308 * 215.05894 * 19 18 2 42 42 H 1.08997 * 109.47018 * 335.05926 * 19 18 2 43 43 H 0.96997 * 119.99812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4390 -1.8500 -1.1492 6 7 2.0296 -0.0792 -2.4214 7 6 1.6088 1.3215 -2.5070 8 6 2.4473 -0.7938 -3.6301 9 6 1.2495 -1.4550 -4.2619 10 7 0.4976 -0.8990 -5.1350 11 6 -0.5382 -1.6111 -5.6180 12 6 -1.5091 -1.2521 -6.5750 13 6 -2.4907 -2.1291 -6.9240 14 6 -2.5546 -3.3899 -6.3472 15 6 -1.6199 -3.7678 -5.4100 16 6 -0.6083 -2.8836 -5.0407 17 16 0.7221 -3.0364 -3.8973 18 7 2.0184 -0.6905 1.1961 19 6 1.6645 -2.0931 1.4280 20 6 2.8057 -0.0250 2.0975 21 1 2.7588 1.0520 2.1636 22 6 3.6639 -0.7346 2.9262 23 7 3.8560 -2.0216 2.7278 24 14 4.5465 0.1370 4.3230 25 1 3.7121 0.0765 5.5499 26 1 5.8494 -0.5286 4.5771 27 1 4.7794 1.5560 3.9523 28 1 -0.3633 -1.0239 -0.0873 29 1 -0.3634 0.5876 -0.8430 30 1 -0.3633 0.4362 0.9305 31 1 2.4541 1.9696 -2.2757 32 1 1.2539 1.5332 -3.5156 33 1 0.8053 1.5037 -1.7934 34 1 2.8872 -0.0886 -4.3353 35 1 3.1844 -1.5524 -3.3672 36 1 -1.4742 -0.2753 -7.0342 37 1 -3.2280 -1.8402 -7.6583 38 1 -3.3386 -4.0752 -6.6340 39 1 -1.6706 -4.7488 -4.9613 40 1 2.4601 -2.7357 1.0509 41 1 1.5359 -2.2635 2.4968 42 1 0.7343 -2.3238 0.9088 43 1 4.4560 -2.5173 3.3066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:48 Heat of formation + Delta-G solvation = 63.399512 kcal Electronic energy + Delta-G solvation = -26354.661261 eV Core-core repulsion = 22721.021086 eV Total energy + Delta-G solvation = -3633.640175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.47428 -39.46100 -37.20391 -35.59584 -34.88692 -32.24631 -31.29155 -30.73634 -29.14364 -27.88456 -26.19840 -25.80204 -24.34979 -23.70728 -22.69466 -21.55538 -20.61076 -18.62365 -18.43564 -17.09518 -16.72883 -16.03562 -15.97527 -15.77139 -15.41043 -15.01529 -14.62679 -14.42868 -14.09345 -13.77900 -13.49702 -13.21487 -12.91737 -12.64525 -12.61264 -12.35790 -12.28413 -11.98199 -11.87353 -11.79140 -11.42473 -11.34617 -10.89883 -10.82557 -10.76760 -10.58576 -10.30069 -10.22449 -9.97465 -9.84167 -9.73230 -9.11092 -8.75170 -8.44637 -8.41206 -8.20202 -6.71012 -5.68572 -3.19387 0.28604 0.97197 1.24805 1.78335 2.17682 3.29883 3.33083 3.41454 3.44779 3.46112 3.59468 3.84655 4.46380 4.48260 4.68006 4.87060 4.97740 5.04624 5.14192 5.29590 5.35177 5.41391 5.45190 5.52714 5.61378 5.69479 5.71680 5.81785 5.92531 5.96359 5.99603 6.05171 6.16079 6.29172 6.43086 6.50833 6.71119 6.76151 7.02587 7.52181 7.53499 7.75542 7.81364 8.11194 8.39713 8.86314 9.24739 9.85809 10.35903 11.32974 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.002974 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.234114 B = 9412.657688 C = 9733.835607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.083 0.917 4 C 0.492 3.508 5 O -0.511 6.511 6 N -0.623 5.623 7 C 0.079 3.921 8 C 0.183 3.817 9 C 0.082 3.918 10 N -0.467 5.467 11 C 0.083 3.917 12 C -0.066 4.066 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.069 4.069 16 C -0.198 4.198 17 S 0.148 5.852 18 N -0.572 5.572 19 C 0.173 3.827 20 C -0.266 4.266 21 H 0.070 0.930 22 C 0.009 3.991 23 N -0.893 5.893 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.044 0.956 41 H 0.036 0.964 42 H -0.005 1.005 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 1.395 -19.154 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.101 0.899 4 C 0.279 3.721 5 O -0.383 6.383 6 N -0.361 5.361 7 C -0.065 4.065 8 C 0.056 3.944 9 C -0.204 4.204 10 N -0.182 5.182 11 C -0.039 4.039 12 C -0.087 4.087 13 C -0.132 4.132 14 C -0.131 4.131 15 C -0.091 4.091 16 C -0.317 4.317 17 S 0.406 5.594 18 N -0.292 5.292 19 C 0.029 3.971 20 C -0.396 4.396 21 H 0.088 0.912 22 C -0.191 4.191 23 N -0.536 5.536 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.432 0.408 -18.338 21.101 hybrid contribution -0.021 0.741 -0.042 0.742 sum -10.453 1.149 -18.379 21.175 Atomic orbital electron populations 1.22227 0.96316 1.01685 1.01318 1.20487 0.93569 0.96522 0.84801 0.89856 1.23348 0.77107 0.87600 0.84042 1.90651 1.44606 1.18346 1.84664 1.48457 1.68860 1.12706 1.06071 1.21858 1.00283 0.81398 1.02915 1.19962 0.89704 0.97470 0.87293 1.27474 1.01065 0.95650 0.96207 1.66242 1.04839 1.35118 1.12022 1.19234 0.95490 0.89695 0.99477 1.20354 0.92651 1.00241 0.95494 1.20690 0.98335 0.93811 1.00330 1.21102 0.98623 0.96754 0.96648 1.20368 0.92806 0.98462 0.97492 1.24187 1.03427 1.00042 1.04083 1.84668 1.20831 1.15422 1.38478 1.43901 1.57595 1.10411 1.17338 1.20773 0.94689 0.84027 0.97647 1.19225 1.16585 0.91419 1.12353 0.91238 1.25180 0.97389 0.96141 1.00430 1.70123 1.38114 1.06890 1.38516 0.86235 0.79030 0.78812 0.82278 1.21361 1.21672 1.20427 0.92829 0.93286 0.91409 0.92552 0.91134 0.90724 0.87888 0.87516 0.85055 0.85020 0.84975 0.85287 0.93732 0.94524 0.98684 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.86 37.16 0.33 -2.39 16 2 C 0.16 3.30 2.28 -69.08 -0.16 3.14 16 3 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 4 C 0.49 9.97 6.89 -10.98 -0.08 9.89 16 5 O -0.51 -12.18 14.10 5.56 0.08 -12.10 16 6 N -0.62 -9.89 2.86 -182.96 -0.52 -10.42 16 7 C 0.08 0.97 9.83 59.85 0.59 1.56 16 8 C 0.18 2.62 5.96 -5.20 -0.03 2.59 16 9 C 0.08 1.21 6.87 -13.90 -0.10 1.11 16 10 N -0.47 -6.87 10.57 -9.08 -0.10 -6.96 16 11 C 0.08 1.14 7.00 -84.96 -0.59 0.54 16 12 C -0.07 -0.71 10.05 -39.29 -0.39 -1.11 16 13 C -0.11 -0.94 9.94 -40.12 -0.40 -1.34 16 14 C -0.11 -0.94 10.04 -39.59 -0.40 -1.34 16 15 C -0.07 -0.74 10.07 -39.39 -0.40 -1.14 16 16 C -0.20 -2.67 6.56 -38.55 -0.25 -2.93 16 17 S 0.15 2.21 23.11 -107.50 -2.48 -0.28 16 18 N -0.57 -14.73 2.71 -174.82 -0.47 -15.21 16 19 C 0.17 4.57 7.33 59.85 0.44 5.01 16 20 C -0.27 -7.34 9.59 -15.06 -0.14 -7.48 16 21 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 22 C 0.01 0.24 5.18 -17.43 -0.09 0.15 16 23 N -0.89 -26.74 10.57 55.49 0.59 -26.15 16 24 Si 0.91 21.86 29.56 -169.99 -5.03 16.84 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.05 0.99 6.86 -51.93 -0.36 0.64 16 29 H 0.05 0.71 6.21 -51.93 -0.32 0.39 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 33 H 0.07 0.90 4.88 -51.93 -0.25 0.65 16 34 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.11 1.64 7.38 -51.93 -0.38 1.25 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.04 1.32 6.61 -51.93 -0.34 0.98 16 41 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 42 H -0.01 -0.13 6.53 -51.93 -0.34 -0.47 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -34.08 364.73 -9.77 -43.85 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.66 Total: -1.35 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.67 Total: 6.28 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.51 Total: -58.74 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.48 Total: -0.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.08 -9.77 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.253 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds