Wall clock time and date at job start Tue Mar 31 2020 18:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 C 1.50703 * 109.46875 * 240.00268 * 2 1 3 5 5 O 1.21277 * 119.99627 * 258.07292 * 4 2 1 6 6 N 1.34777 * 120.00215 * 78.07629 * 4 2 1 7 7 C 1.46502 * 119.99879 * 3.41263 * 6 4 2 8 8 C 1.46495 * 120.00051 * 183.41233 * 6 4 2 9 9 C 1.50701 * 109.46867 * 89.99675 * 8 6 4 10 10 N 1.27931 * 124.23428 * 89.70453 * 9 8 6 11 11 C 1.34665 * 117.84270 * 179.80802 * 10 9 8 12 12 C 1.40971 * 129.68483 * 180.17387 * 11 10 9 13 13 C 1.36178 * 120.42389 * 180.33722 * 12 11 10 14 14 C 1.38797 * 120.77642 * 359.96205 * 13 12 11 15 15 C 1.37652 * 120.06998 * 0.02562 * 14 13 12 16 16 C 1.39337 * 119.94907 * 359.97438 * 15 14 13 17 17 S 1.70647 * 124.23953 * 269.99679 * 9 8 6 18 18 N 1.46492 * 109.47227 * 119.99779 * 2 1 3 19 19 C 1.46501 * 120.00108 * 60.00294 * 18 2 1 20 20 C 1.36945 * 120.00300 * 239.99779 * 18 2 1 21 21 H 1.08002 * 119.99312 * 24.12289 * 20 18 2 22 22 C 1.38805 * 119.99945 * 204.11981 * 20 18 2 23 23 N 1.31623 * 120.00486 * 9.10988 * 22 20 18 24 24 Si 1.86809 * 119.99735 * 189.10181 * 22 20 18 25 25 H 1.48496 * 109.46741 * 90.00240 * 24 22 20 26 26 H 1.48498 * 109.47277 * 210.00351 * 24 22 20 27 27 H 1.48499 * 109.46855 * 330.00658 * 24 22 20 28 28 H 1.08999 * 109.47095 * 175.12660 * 1 2 3 29 29 H 1.08995 * 109.47392 * 55.12496 * 1 2 3 30 30 H 1.09000 * 109.46946 * 295.11729 * 1 2 3 31 31 H 1.09000 * 109.47297 * 84.56720 * 7 6 4 32 32 H 1.08996 * 109.47127 * 204.57363 * 7 6 4 33 33 H 1.08999 * 109.46912 * 324.56987 * 7 6 4 34 34 H 1.08996 * 109.47120 * 209.99983 * 8 6 4 35 35 H 1.09001 * 109.47174 * 330.00329 * 8 6 4 36 36 H 1.07995 * 119.78844 * 0.32457 * 12 11 10 37 37 H 1.07998 * 119.61132 * 179.97438 * 13 12 11 38 38 H 1.08005 * 119.96349 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.02552 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.47349 * 95.06140 * 19 18 2 41 41 H 1.08994 * 109.47308 * 215.05894 * 19 18 2 42 42 H 1.08997 * 109.47018 * 335.05926 * 19 18 2 43 43 H 0.96997 * 119.99812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4390 -1.8500 -1.1492 6 7 2.0296 -0.0792 -2.4214 7 6 1.6088 1.3215 -2.5070 8 6 2.4473 -0.7938 -3.6301 9 6 1.2495 -1.4550 -4.2619 10 7 0.4976 -0.8990 -5.1350 11 6 -0.5382 -1.6111 -5.6180 12 6 -1.5091 -1.2521 -6.5750 13 6 -2.4907 -2.1291 -6.9240 14 6 -2.5546 -3.3899 -6.3472 15 6 -1.6199 -3.7678 -5.4100 16 6 -0.6083 -2.8836 -5.0407 17 16 0.7221 -3.0364 -3.8973 18 7 2.0184 -0.6905 1.1961 19 6 1.6645 -2.0931 1.4280 20 6 2.8057 -0.0250 2.0975 21 1 2.7588 1.0520 2.1636 22 6 3.6639 -0.7346 2.9262 23 7 3.8560 -2.0216 2.7278 24 14 4.5465 0.1370 4.3230 25 1 3.7121 0.0765 5.5499 26 1 5.8494 -0.5286 4.5771 27 1 4.7794 1.5560 3.9523 28 1 -0.3633 -1.0239 -0.0873 29 1 -0.3634 0.5876 -0.8430 30 1 -0.3633 0.4362 0.9305 31 1 2.4541 1.9696 -2.2757 32 1 1.2539 1.5332 -3.5156 33 1 0.8053 1.5037 -1.7934 34 1 2.8872 -0.0886 -4.3353 35 1 3.1844 -1.5524 -3.3672 36 1 -1.4742 -0.2753 -7.0342 37 1 -3.2280 -1.8402 -7.6583 38 1 -3.3386 -4.0752 -6.6340 39 1 -1.6706 -4.7488 -4.9613 40 1 2.4601 -2.7357 1.0509 41 1 1.5359 -2.2635 2.4968 42 1 0.7343 -2.3238 0.9088 43 1 4.4560 -2.5173 3.3066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:47 Heat of formation + Delta-G solvation = 41.977873 kcal Electronic energy + Delta-G solvation = -26355.590173 eV Core-core repulsion = 22721.021086 eV Total energy + Delta-G solvation = -3634.569087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.46734 -40.90797 -38.23698 -37.30000 -36.36265 -34.08296 -32.08985 -31.98760 -30.77084 -28.95370 -28.04323 -27.31829 -25.71562 -25.05305 -23.73876 -22.92555 -21.84190 -19.90329 -19.57879 -18.96729 -17.87724 -17.46805 -17.34463 -16.93286 -16.70381 -16.29918 -15.82111 -15.69626 -15.47178 -14.94358 -14.90177 -14.76704 -14.46600 -14.09634 -13.70267 -13.54550 -13.48288 -13.29338 -13.09976 -12.93474 -12.80052 -12.72021 -12.66415 -12.48071 -12.41069 -12.30686 -11.90669 -11.83727 -11.79464 -11.16014 -10.86585 -10.80048 -10.46320 -9.78623 -9.64121 -9.16810 -8.77472 -7.79766 -5.34298 -0.66812 0.16319 0.22628 0.75640 1.21240 1.47370 1.49102 1.58258 1.77654 2.13459 2.51230 2.71156 2.80937 3.33355 3.59326 3.61804 3.75525 3.89258 4.08492 4.19001 4.28166 4.28891 4.31628 4.34988 4.39711 4.43237 4.64414 4.67141 4.78705 4.88494 4.91597 4.96134 5.03199 5.15382 5.26072 5.26130 5.38029 5.40711 5.51234 5.64896 5.77855 5.86997 6.27745 6.39495 6.50210 7.12292 7.32458 7.83753 8.29951 9.21907 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.002974 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.234114 B = 9412.657688 C = 9733.835607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 H 0.100 0.900 4 C 0.491 3.509 5 O -0.557 6.557 6 N -0.615 5.615 7 C 0.073 3.927 8 C 0.186 3.814 9 C 0.073 3.927 10 N -0.465 5.465 11 C 0.047 3.953 12 C -0.073 4.073 13 C -0.100 4.100 14 C -0.090 4.090 15 C -0.089 4.089 16 C -0.204 4.204 17 S 0.090 5.910 18 N -0.591 5.591 19 C 0.200 3.800 20 C -0.271 4.271 21 H 0.084 0.916 22 C -0.054 4.054 23 N -0.935 5.935 24 Si 0.976 3.024 25 H -0.284 1.284 26 H -0.299 1.299 27 H -0.261 1.261 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.141 0.859 40 H 0.004 0.996 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.841 3.723 -21.609 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.041 3.959 3 H 0.117 0.883 4 C 0.278 3.722 5 O -0.433 6.433 6 N -0.351 5.351 7 C -0.069 4.069 8 C 0.059 3.941 9 C -0.213 4.213 10 N -0.179 5.179 11 C -0.073 4.073 12 C -0.094 4.094 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.323 4.323 17 S 0.347 5.653 18 N -0.313 5.313 19 C 0.055 3.945 20 C -0.401 4.401 21 H 0.102 0.898 22 C -0.249 4.249 23 N -0.581 5.581 24 Si 0.804 3.196 25 H -0.210 1.210 26 H -0.226 1.226 27 H -0.185 1.185 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.190 0.810 38 H 0.188 0.812 39 H 0.158 0.842 40 H 0.022 0.978 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.941 2.822 -20.867 24.716 hybrid contribution 0.524 0.044 0.437 0.684 sum -12.417 2.867 -20.430 24.079 Atomic orbital electron populations 1.22087 0.93653 1.01375 1.03055 1.20714 0.95260 0.96490 0.83417 0.88255 1.22915 0.76859 0.87024 0.85380 1.90651 1.46751 1.20254 1.85614 1.48234 1.67553 1.13932 1.05351 1.22116 1.01172 0.79167 1.04400 1.20009 0.89520 0.97606 0.86920 1.27278 1.01555 0.95317 0.97149 1.66199 1.04971 1.35295 1.11456 1.19670 0.96435 0.90025 1.01141 1.20726 0.92310 1.01606 0.94742 1.21213 0.97861 0.93004 0.99940 1.21634 0.97923 0.97297 0.94328 1.20734 0.92919 0.98870 0.98641 1.24299 1.03431 1.00820 1.03755 1.84790 1.23113 1.16925 1.40500 1.44013 1.57846 1.09870 1.19553 1.20285 0.93861 0.84634 0.95711 1.19683 1.15747 0.92132 1.12557 0.89820 1.26043 0.98761 0.96816 1.03316 1.70341 1.39356 1.08613 1.39750 0.85140 0.77117 0.78315 0.79064 1.21038 1.22625 1.18534 0.94468 0.89787 0.91042 0.90952 0.89178 0.90146 0.84894 0.89345 0.83417 0.80965 0.81153 0.84161 0.97753 0.97029 0.97104 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.86 71.98 0.64 -4.15 16 2 C 0.15 6.23 2.28 44.25 0.10 6.33 16 3 H 0.10 3.69 6.99 -2.39 -0.02 3.67 16 4 C 0.49 20.12 6.89 87.66 0.60 20.72 16 5 O -0.56 -27.89 14.10 -3.02 -0.04 -27.94 16 6 N -0.61 -19.07 2.86 -851.15 -2.43 -21.50 16 7 C 0.07 1.61 9.83 127.77 1.26 2.87 16 8 C 0.19 5.35 5.96 85.63 0.51 5.86 16 9 C 0.07 2.18 6.87 88.68 0.61 2.79 16 10 N -0.46 -13.25 10.57 -182.51 -1.93 -15.18 16 11 C 0.05 1.25 7.00 39.78 0.28 1.52 16 12 C -0.07 -1.34 10.05 22.46 0.23 -1.12 16 13 C -0.10 -1.24 9.94 21.92 0.22 -1.02 16 14 C -0.09 -1.18 10.04 22.26 0.22 -0.96 16 15 C -0.09 -1.76 10.07 22.40 0.23 -1.53 16 16 C -0.20 -5.44 6.56 22.94 0.15 -5.29 16 17 S 0.09 2.81 23.11 -56.49 -1.31 1.51 16 18 N -0.59 -31.03 2.71 -707.00 -1.92 -32.95 16 19 C 0.20 11.13 7.33 127.77 0.94 12.06 16 20 C -0.27 -15.06 9.59 84.03 0.81 -14.26 16 21 H 0.08 4.30 7.82 -2.91 -0.02 4.28 16 22 C -0.05 -3.10 5.18 84.86 0.44 -2.66 16 23 N -0.94 -58.54 10.57 21.65 0.23 -58.31 16 24 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 29 H 0.08 2.21 6.21 -2.39 -0.01 2.19 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 33 H 0.08 1.69 4.88 -2.39 -0.01 1.67 16 34 H 0.13 2.94 8.07 -2.39 -0.02 2.92 16 35 H 0.09 2.87 7.38 -2.39 -0.02 2.85 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.00 0.26 6.61 -2.39 -0.02 0.24 16 41 H 0.01 0.66 7.31 -2.39 -0.02 0.64 16 42 H 0.01 0.54 6.53 -2.39 -0.02 0.52 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -78.81 364.73 2.88 -75.92 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.03 Total: 9.56 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 7.22 Total: 21.17 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -6.05 Total: -127.94 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.94 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.51 kcal Total: -78.81 2.88 -75.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.903 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds