Wall clock time and date at job start Tue Mar 31 2020 18:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 5 5 O 1.21269 * 120.00524 * 179.72574 * 4 3 2 6 6 C 1.50706 * 120.00081 * 359.97438 * 4 3 2 7 7 N 1.46895 * 109.47182 * 179.72734 * 6 4 3 8 8 C 1.46899 * 110.99967 * 293.94974 * 7 6 4 9 9 C 1.46907 * 111.00018 * 170.00113 * 7 6 4 10 10 C 1.50693 * 109.47341 * 190.00071 * 9 7 6 11 11 H 1.08002 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.37873 * 120.00237 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99722 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00103 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47214 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47258 * 120.00170 * 14 12 10 17 17 H 1.48503 * 109.46777 * 239.99770 * 14 12 10 18 18 C 1.38545 * 119.99877 * 269.99747 * 3 2 1 19 19 N 1.28782 * 124.81336 * 359.69842 * 18 3 2 20 20 C 1.34753 * 117.91816 * 179.77072 * 19 18 3 21 21 C 1.41128 * 128.75202 * 180.21311 * 20 19 18 22 22 C 1.37173 * 120.43122 * 180.32502 * 21 20 19 23 23 C 1.38730 * 120.60857 * 359.97438 * 22 21 20 24 24 C 1.37691 * 119.98754 * 0.02562 * 23 22 21 25 25 C 1.39290 * 120.20024 * 0.02562 * 24 23 22 26 26 S 1.75812 * 124.81195 * 179.97438 * 18 3 2 27 27 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 29 29 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 30 30 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 31 31 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 32 32 H 1.09001 * 109.46564 * 299.73030 * 6 4 3 33 33 H 1.08998 * 109.47012 * 59.72084 * 6 4 3 34 34 H 1.08998 * 109.47218 * 60.00734 * 8 7 6 35 35 H 1.09004 * 109.47214 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47566 * 300.00424 * 8 7 6 37 37 H 1.08998 * 109.46578 * 309.99766 * 9 7 6 38 38 H 1.08996 * 109.46890 * 69.99467 * 9 7 6 39 39 H 0.97000 * 119.99749 * 180.02562 * 13 12 10 40 40 H 1.08003 * 119.78251 * 0.30920 * 21 20 19 41 41 H 1.07998 * 119.68917 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00786 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.89963 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0164 1.1671 5 8 2.6522 3.1581 1.1672 6 6 1.9914 1.3063 2.4723 7 7 2.3160 2.2040 3.5888 8 6 3.7542 2.5011 3.6244 9 6 1.8633 1.6393 4.8672 10 6 1.9874 2.6812 5.9487 11 1 2.3652 3.6646 5.7104 12 6 1.6187 2.3793 7.2425 13 7 1.1582 1.1821 7.5326 14 14 1.7719 3.6712 8.5830 15 1 2.3117 4.9264 8.0014 16 1 0.4346 3.9334 9.1730 17 1 2.6918 3.1805 9.6405 18 6 2.2494 2.0341 -1.1998 19 7 2.0720 1.5156 -2.3652 20 6 2.3364 2.2801 -3.4429 21 6 2.2199 1.9502 -4.8101 22 6 2.5449 2.8679 -5.7765 23 6 2.9923 4.1336 -5.4266 24 6 3.1140 4.4780 -4.0991 25 6 2.7895 3.5587 -3.1042 26 16 2.8329 3.6860 -1.3474 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.9422 1.0169 2.5319 33 1 2.6175 0.4159 2.5281 34 1 4.0489 2.9825 2.6920 35 1 3.9670 3.1672 4.4606 36 1 4.3138 1.5739 3.7474 37 1 0.8220 1.3294 4.7790 38 1 2.4789 0.7765 5.1215 39 1 0.8985 0.9698 8.4427 40 1 1.8728 0.9686 -5.0974 41 1 2.4508 2.6028 -6.8192 42 1 3.2451 4.8488 -6.1955 43 1 3.4620 5.4639 -3.8283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:12 Heat of formation + Delta-G solvation = 44.199278 kcal Electronic energy + Delta-G solvation = -25672.089060 eV Core-core repulsion = 22037.616300 eV Total energy + Delta-G solvation = -3634.472760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86535 -40.02032 -37.44362 -36.11641 -35.71012 -32.59933 -31.18134 -31.13590 -29.73100 -28.41669 -27.05716 -25.03043 -24.25451 -23.65282 -23.04797 -21.54351 -20.49761 -19.61700 -18.41404 -17.48140 -17.34903 -16.39665 -16.21603 -15.77757 -15.31733 -14.86650 -14.75663 -14.60683 -14.21719 -14.13505 -14.07518 -13.94515 -13.69666 -13.11213 -12.70180 -12.53040 -12.29375 -12.11868 -12.01226 -11.90012 -11.70083 -11.33819 -11.14251 -11.04840 -10.91551 -10.72035 -10.60626 -10.18136 -10.06079 -10.04055 -9.78513 -9.68862 -9.24733 -8.50025 -8.22079 -8.14045 -7.41635 -6.09207 -4.10016 0.34934 0.93564 1.00735 1.75792 1.98994 2.30362 2.65742 3.28947 3.36632 3.42518 3.58246 4.02684 4.35037 4.47635 4.54213 4.70485 4.77864 4.85262 4.96006 5.03800 5.17635 5.19594 5.27274 5.27445 5.47686 5.52750 5.57849 5.61139 5.69138 5.88848 6.00270 6.05478 6.14912 6.20565 6.23686 6.29995 6.44654 6.66827 6.80597 7.11168 7.18008 7.55829 7.68512 7.79548 7.95981 8.05575 8.41012 8.97797 9.54524 11.01844 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.002550 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.072616 B =10978.517848 C =11820.151169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.521 5.521 4 C 0.514 3.486 5 O -0.473 6.473 6 C 0.047 3.953 7 N -0.524 5.524 8 C 0.030 3.970 9 C 0.194 3.806 10 C -0.506 4.506 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.334 3.666 19 N -0.519 5.519 20 C 0.113 3.887 21 C -0.079 4.079 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.062 4.062 25 C -0.228 4.228 26 S 0.171 5.829 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.008 0.992 37 H 0.032 0.968 38 H -0.005 1.005 39 H 0.261 0.739 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -1.306 -24.575 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.251 5.251 4 C 0.303 3.697 5 O -0.343 6.343 6 C -0.084 4.084 7 N -0.249 5.249 8 C -0.118 4.118 9 C 0.069 3.931 10 C -0.545 4.545 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.039 4.039 19 N -0.242 5.242 20 C -0.008 4.008 21 C -0.100 4.100 22 C -0.127 4.127 23 C -0.142 4.142 24 C -0.084 4.084 25 C -0.347 4.347 26 S 0.424 5.576 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.027 0.973 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.127 -0.123 -23.565 23.661 hybrid contribution 0.222 -0.644 0.068 0.684 sum 2.348 -0.767 -23.497 23.626 Atomic orbital electron populations 1.22167 0.94437 1.03173 1.03106 1.21908 0.95771 0.79380 1.04891 1.45545 1.62471 1.15353 1.01766 1.21770 0.76172 0.87012 0.84740 1.90595 1.41595 1.17295 1.84839 1.21990 1.03497 0.94567 0.88368 1.61912 1.16472 1.42862 1.03673 1.22402 0.87283 0.99441 1.02691 1.19813 0.95546 0.94416 0.83288 1.21155 1.42646 0.98763 0.91896 0.91568 1.24978 0.95286 0.95616 0.98726 1.69957 1.44043 1.19947 1.19922 0.86413 0.77721 0.81683 0.81475 1.19570 1.20967 1.21089 1.23806 0.97180 0.94004 0.88866 1.66192 1.26057 1.35848 0.96092 1.18739 1.00472 0.88770 0.92827 1.20588 1.00578 1.00197 0.88643 1.20880 0.99211 0.93460 0.99159 1.21044 1.00810 0.96938 0.95392 1.20288 0.98902 0.97982 0.91274 1.24460 1.09811 0.99605 1.00847 1.86278 1.67147 1.09977 0.94224 0.90498 0.91719 0.91907 0.88449 0.88657 0.87371 0.91961 0.91952 0.90259 0.97311 0.94977 0.98706 0.92913 0.85215 0.85170 0.85190 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.10 1.07 5.76 -4.05 -0.02 1.05 16 3 N -0.52 -7.16 2.66 -116.32 -0.31 -7.47 16 4 C 0.51 8.23 7.36 -10.98 -0.08 8.14 16 5 O -0.47 -8.80 11.75 5.57 0.07 -8.73 16 6 C 0.05 0.77 4.01 -4.98 -0.02 0.75 16 7 N -0.52 -11.09 4.49 -245.83 -1.10 -12.20 16 8 C 0.03 0.60 9.03 60.06 0.54 1.14 16 9 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 10 C -0.51 -13.93 8.46 -34.45 -0.29 -14.22 16 11 H 0.07 1.84 7.12 -52.49 -0.37 1.47 16 12 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 14 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.33 4.92 7.82 -88.47 -0.69 4.23 16 19 N -0.52 -7.41 9.79 -11.04 -0.11 -7.52 16 20 C 0.11 1.51 6.94 -84.90 -0.59 0.92 16 21 C -0.08 -0.83 10.10 -38.87 -0.39 -1.22 16 22 C -0.11 -0.89 9.99 -39.79 -0.40 -1.28 16 23 C -0.12 -1.01 10.05 -39.60 -0.40 -1.41 16 24 C -0.06 -0.65 10.06 -39.39 -0.40 -1.04 16 25 C -0.23 -3.00 6.52 -38.60 -0.25 -3.25 16 26 S 0.17 2.50 20.41 -107.50 -2.19 0.31 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.67 7.23 -51.93 -0.38 0.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.96 7.61 -51.93 -0.39 0.57 16 31 H 0.10 0.83 6.43 -51.93 -0.33 0.50 16 32 H 0.11 1.62 6.99 -51.93 -0.36 1.25 16 33 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 34 H 0.06 1.19 5.88 -51.93 -0.31 0.88 16 35 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.00 -0.13 8.12 -51.93 -0.42 -0.55 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -32.18 366.15 -10.96 -43.14 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.81 Total: -3.01 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.73 Total: -1.23 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.79 Total: -52.39 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.19 Total: 0.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.18 -10.96 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.336 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds