Wall clock time and date at job start Tue Mar 31 2020 18:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 5 5 O 1.21269 * 120.00524 * 179.72574 * 4 3 2 6 6 C 1.50706 * 120.00081 * 359.97438 * 4 3 2 7 7 N 1.46895 * 109.47182 * 179.72734 * 6 4 3 8 8 C 1.46899 * 110.99967 * 293.94974 * 7 6 4 9 9 C 1.46907 * 111.00018 * 170.00113 * 7 6 4 10 10 C 1.50693 * 109.47341 * 190.00071 * 9 7 6 11 11 H 1.08002 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.37873 * 120.00237 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99722 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00103 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47214 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47258 * 120.00170 * 14 12 10 17 17 H 1.48503 * 109.46777 * 239.99770 * 14 12 10 18 18 C 1.38545 * 119.99877 * 269.99747 * 3 2 1 19 19 N 1.28782 * 124.81336 * 359.69842 * 18 3 2 20 20 C 1.34753 * 117.91816 * 179.77072 * 19 18 3 21 21 C 1.41128 * 128.75202 * 180.21311 * 20 19 18 22 22 C 1.37173 * 120.43122 * 180.32502 * 21 20 19 23 23 C 1.38730 * 120.60857 * 359.97438 * 22 21 20 24 24 C 1.37691 * 119.98754 * 0.02562 * 23 22 21 25 25 C 1.39290 * 120.20024 * 0.02562 * 24 23 22 26 26 S 1.75812 * 124.81195 * 179.97438 * 18 3 2 27 27 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 29 29 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 30 30 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 31 31 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 32 32 H 1.09001 * 109.46564 * 299.73030 * 6 4 3 33 33 H 1.08998 * 109.47012 * 59.72084 * 6 4 3 34 34 H 1.08998 * 109.47218 * 60.00734 * 8 7 6 35 35 H 1.09004 * 109.47214 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47566 * 300.00424 * 8 7 6 37 37 H 1.08998 * 109.46578 * 309.99766 * 9 7 6 38 38 H 1.08996 * 109.46890 * 69.99467 * 9 7 6 39 39 H 0.97000 * 119.99749 * 180.02562 * 13 12 10 40 40 H 1.08003 * 119.78251 * 0.30920 * 21 20 19 41 41 H 1.07998 * 119.68917 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00786 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.89963 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0164 1.1671 5 8 2.6522 3.1581 1.1672 6 6 1.9914 1.3063 2.4723 7 7 2.3160 2.2040 3.5888 8 6 3.7542 2.5011 3.6244 9 6 1.8633 1.6393 4.8672 10 6 1.9874 2.6812 5.9487 11 1 2.3652 3.6646 5.7104 12 6 1.6187 2.3793 7.2425 13 7 1.1582 1.1821 7.5326 14 14 1.7719 3.6712 8.5830 15 1 2.3117 4.9264 8.0014 16 1 0.4346 3.9334 9.1730 17 1 2.6918 3.1805 9.6405 18 6 2.2494 2.0341 -1.1998 19 7 2.0720 1.5156 -2.3652 20 6 2.3364 2.2801 -3.4429 21 6 2.2199 1.9502 -4.8101 22 6 2.5449 2.8679 -5.7765 23 6 2.9923 4.1336 -5.4266 24 6 3.1140 4.4780 -4.0991 25 6 2.7895 3.5587 -3.1042 26 16 2.8329 3.6860 -1.3474 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.9422 1.0169 2.5319 33 1 2.6175 0.4159 2.5281 34 1 4.0489 2.9825 2.6920 35 1 3.9670 3.1672 4.4606 36 1 4.3138 1.5739 3.7474 37 1 0.8220 1.3294 4.7790 38 1 2.4789 0.7765 5.1215 39 1 0.8985 0.9698 8.4427 40 1 1.8728 0.9686 -5.0974 41 1 2.4508 2.6028 -6.8192 42 1 3.2451 4.8488 -6.1955 43 1 3.4620 5.4639 -3.8283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:11 Heat of formation + Delta-G solvation = 25.135716 kcal Electronic energy + Delta-G solvation = -25672.915718 eV Core-core repulsion = 22037.616300 eV Total energy + Delta-G solvation = -3635.299418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99520 -40.99028 -38.57038 -37.65243 -36.68965 -34.65540 -32.06437 -31.94234 -30.86349 -29.80965 -28.78894 -26.50234 -25.45258 -24.68337 -24.01545 -22.84424 -21.84950 -20.67720 -19.52295 -18.60983 -18.49204 -18.17177 -17.38074 -16.90289 -16.50416 -16.17804 -16.07299 -15.90195 -15.58066 -15.29351 -15.18311 -14.94289 -14.71037 -14.40491 -14.13534 -13.75699 -13.43663 -13.38590 -13.12122 -12.90400 -12.83075 -12.75488 -12.70437 -12.59477 -12.43836 -12.17951 -11.96196 -11.84192 -11.40449 -11.08582 -11.03733 -10.90630 -10.80705 -10.60973 -9.21558 -9.09850 -9.04890 -8.21045 -6.28974 -0.60770 -0.07721 0.21120 0.77036 0.93780 1.19919 1.40852 1.42603 1.55563 1.58985 2.40921 2.75669 3.10662 3.12300 3.17504 3.36724 3.72220 3.87915 4.08252 4.12869 4.20576 4.28145 4.35109 4.38090 4.43323 4.47956 4.54248 4.65506 4.71437 4.82470 4.94092 5.05466 5.10385 5.15789 5.24462 5.26541 5.28441 5.32345 5.45884 5.51826 5.65561 5.86628 6.01373 6.21046 6.47276 6.52462 6.67382 6.85390 7.39921 8.89819 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.002550 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.072616 B =10978.517848 C =11820.151169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.516 5.516 4 C 0.518 3.482 5 O -0.506 6.506 6 C 0.049 3.951 7 N -0.542 5.542 8 C 0.039 3.961 9 C 0.210 3.790 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.964 3.036 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.317 3.683 19 N -0.515 5.515 20 C 0.076 3.924 21 C -0.086 4.086 22 C -0.096 4.096 23 C -0.103 4.103 24 C -0.079 4.079 25 C -0.235 4.235 26 S 0.122 5.878 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.019 0.981 37 H 0.018 0.982 38 H -0.022 1.022 39 H 0.265 0.735 40 H 0.144 0.856 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -1.453 -27.079 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.245 5.245 4 C 0.307 3.693 5 O -0.379 6.379 6 C -0.082 4.082 7 N -0.267 5.267 8 C -0.109 4.109 9 C 0.084 3.916 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.056 4.056 19 N -0.238 5.238 20 C -0.044 4.044 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.102 4.102 25 C -0.354 4.354 26 S 0.375 5.625 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.036 0.964 38 H -0.004 1.004 39 H 0.074 0.926 40 H 0.162 0.838 41 H 0.188 0.812 42 H 0.186 0.814 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.223 -0.299 -26.121 26.217 hybrid contribution 0.192 -0.607 0.551 0.842 sum 2.415 -0.906 -25.570 25.699 Atomic orbital electron populations 1.22129 0.93821 1.04442 1.01875 1.22193 0.96256 0.77787 1.06123 1.45461 1.62002 1.16152 1.00925 1.21542 0.75959 0.86557 0.85202 1.90592 1.43263 1.18559 1.85484 1.22028 1.04789 0.94491 0.86885 1.61707 1.17135 1.44358 1.03458 1.22283 0.86925 0.99509 1.02187 1.19452 0.94351 0.93133 0.84628 1.21436 1.42650 0.98963 0.93165 0.92558 1.25777 0.94881 0.97589 1.00912 1.70047 1.44709 1.21513 1.20628 0.85415 0.77911 0.79131 0.78653 1.19403 1.20335 1.20266 1.23836 0.98593 0.93899 0.89224 1.66173 1.25287 1.36108 0.96235 1.19198 1.02290 0.89128 0.93748 1.20946 1.00499 1.01560 0.87680 1.21390 0.96946 0.92698 1.00589 1.21562 0.98141 0.97596 0.95120 1.20658 0.99391 0.98333 0.91815 1.24535 1.10740 1.00359 0.99727 1.86261 1.68190 1.11300 0.96796 0.87937 0.92616 0.93375 0.87839 0.86757 0.86066 0.89426 0.91118 0.92357 0.96262 0.96401 1.00426 0.92597 0.83782 0.81247 0.81417 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 71.98 0.74 -2.29 16 2 C 0.10 1.94 5.76 86.38 0.50 2.44 16 3 N -0.52 -14.27 2.66 -640.33 -1.70 -15.97 16 4 C 0.52 16.83 7.36 87.66 0.65 17.48 16 5 O -0.51 -19.49 11.75 -3.00 -0.04 -19.53 16 6 C 0.05 1.59 4.01 85.56 0.34 1.93 16 7 N -0.54 -23.32 4.49 -931.66 -4.18 -27.50 16 8 C 0.04 1.59 9.03 127.69 1.15 2.74 16 9 C 0.21 10.65 4.72 85.55 0.40 11.05 16 10 C -0.52 -29.40 8.46 25.60 0.22 -29.18 16 11 H 0.06 3.21 7.12 -2.91 -0.02 3.19 16 12 C 0.01 0.39 5.46 84.65 0.46 0.85 16 13 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 14 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.32 9.57 7.82 179.60 1.40 10.98 16 19 N -0.51 -14.76 9.79 -188.86 -1.85 -16.61 16 20 C 0.08 1.99 6.94 39.79 0.28 2.27 16 21 C -0.09 -1.61 10.10 22.73 0.23 -1.38 16 22 C -0.10 -1.22 9.99 22.14 0.22 -1.00 16 23 C -0.10 -1.34 10.05 22.26 0.22 -1.12 16 24 C -0.08 -1.53 10.06 22.39 0.23 -1.30 16 25 C -0.24 -6.15 6.52 22.91 0.15 -6.00 16 26 S 0.12 3.74 20.41 -56.49 -1.15 2.59 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.12 7.23 -2.39 -0.02 1.11 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.94 7.61 -2.39 -0.02 1.92 16 31 H 0.11 1.80 6.43 -2.38 -0.02 1.79 16 32 H 0.12 3.59 6.99 -2.39 -0.02 3.57 16 33 H 0.09 2.42 7.37 -2.39 -0.02 2.40 16 34 H 0.07 2.76 5.88 -2.39 -0.01 2.75 16 35 H 0.06 2.57 6.76 -2.38 -0.02 2.56 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.02 0.95 7.93 -2.39 -0.02 0.93 16 38 H -0.02 -1.17 8.12 -2.39 -0.02 -1.19 16 39 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 42 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.52 366.15 1.60 -69.92 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.02 Total: 7.12 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 7.19 Total: 7.47 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -7.45 Total: -113.81 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.04 Total: -19.53 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.15 Total: 2.59 kcal Total: -71.52 1.60 -69.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.057 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds