Wall clock time and date at job start Tue Mar 31 2020 18:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47208 * 2 1 4 4 C 1.46901 * 111.00027 * 298.56069 * 3 2 1 5 5 C 1.53001 * 109.47022 * 170.80579 * 4 3 2 6 6 C 1.47195 * 109.47432 * 185.09452 * 5 4 3 7 7 N 5.82159 * 84.07102 * 327.60941 * 2 1 3 8 8 C 1.46905 * 110.99819 * 174.60817 * 3 2 1 9 9 C 1.50693 * 109.47038 * 293.95315 * 8 3 2 10 10 O 1.21297 * 120.00354 * 0.02562 * 9 8 3 11 11 N 1.34775 * 119.99901 * 180.02562 * 9 8 3 12 12 C 1.39937 * 120.00118 * 174.17772 * 11 9 8 13 13 C 1.38682 * 120.11439 * 335.25285 * 12 11 9 14 14 C 1.38226 * 120.02079 * 179.97438 * 13 12 11 15 15 C 1.38385 * 120.24890 * 0.02562 * 14 13 12 16 16 C 1.38089 * 120.23241 * 359.97398 * 15 14 13 17 17 C 1.38987 * 119.97486 * 0.02562 * 16 15 14 18 18 S 1.76200 * 120.12558 * 180.02562 * 17 16 15 19 19 C 1.76200 * 99.99812 * 354.31482 * 18 17 16 20 20 H 1.07999 * 119.99858 * 5.03808 * 19 18 17 21 21 C 1.38689 * 120.00131 * 185.04067 * 19 18 17 22 22 N 1.31652 * 119.99567 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00105 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47442 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47254 * 119.99604 * 23 21 19 26 26 H 1.48500 * 109.47365 * 239.99637 * 23 21 19 27 27 H 1.09002 * 109.47228 * 65.13635 * 1 2 3 28 28 H 1.08994 * 109.47110 * 185.13369 * 1 2 3 29 29 H 1.09002 * 109.46882 * 305.13439 * 1 2 3 30 30 H 1.09005 * 109.46960 * 240.00353 * 2 1 3 31 31 H 1.08998 * 109.47388 * 120.00391 * 2 1 3 32 32 H 1.08997 * 109.47328 * 290.80504 * 4 3 2 33 33 H 1.08998 * 109.47060 * 50.80907 * 4 3 2 34 34 H 1.08999 * 109.47056 * 305.09856 * 5 4 3 35 35 H 1.09003 * 109.46802 * 65.09262 * 5 4 3 36 36 H 1.09004 * 109.46815 * 173.95339 * 8 3 2 37 37 H 1.09000 * 109.47015 * 53.95601 * 8 3 2 38 38 H 0.97003 * 120.00249 * 354.17256 * 11 9 8 39 39 H 1.08001 * 119.98686 * 0.25397 * 13 12 11 40 40 H 1.08004 * 119.87302 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.88826 * 179.97438 * 15 14 13 42 42 H 1.08002 * 120.01272 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5770 2.0999 -1.2045 5 6 1.9056 3.5876 -1.0643 6 6 1.3542 4.3225 -2.2143 7 7 0.9286 4.8895 -3.1019 8 6 3.4825 1.4261 0.1289 9 6 3.8821 0.9046 1.4850 10 8 3.0321 0.5345 2.2672 11 7 5.1841 0.8493 1.8289 12 6 5.5495 0.4812 3.1286 13 6 4.6633 0.6658 4.1792 14 6 5.0261 0.3010 5.4621 15 6 6.2728 -0.2487 5.7044 16 6 7.1633 -0.4372 4.6660 17 6 6.8084 -0.0737 3.3722 18 16 7.9413 -0.3131 2.0441 19 6 9.3563 -0.8556 2.9431 20 1 9.2884 -1.0218 4.0080 21 6 10.5572 -1.0692 2.2831 22 7 10.6398 -0.8670 0.9848 23 14 12.0571 -1.6450 3.2359 24 1 11.7040 -1.7972 4.6703 25 1 12.5146 -2.9510 2.6970 26 1 13.1454 -0.6441 3.0981 27 1 -0.3634 0.4321 -0.9324 28 1 -0.3633 -1.0235 0.0919 29 1 -0.3633 0.5914 0.8405 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0904 1.6951 -2.0766 33 1 0.5010 1.9754 -1.3261 34 1 1.4666 3.9714 -0.1434 35 1 2.9872 3.7194 -1.0336 36 1 3.8281 2.4540 0.0186 37 1 3.9331 0.8061 -0.6462 38 1 5.8679 1.0647 1.1755 39 1 3.6878 1.0906 3.9942 40 1 4.3343 0.4462 6.2787 41 1 6.5504 -0.5313 6.7092 42 1 8.1352 -0.8669 4.8590 43 1 11.4796 -1.0168 0.5231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:55 Heat of formation + Delta-G solvation = 28.932801 kcal Electronic energy + Delta-G solvation = -25168.151100 eV Core-core repulsion = 21533.016336 eV Total energy + Delta-G solvation = -3635.134764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36185 -38.60551 -37.47493 -36.59918 -34.39836 -32.79484 -32.41129 -31.06296 -30.33891 -29.05314 -26.69071 -25.91295 -24.03953 -22.54013 -22.14016 -20.99277 -19.96026 -18.43756 -18.03352 -17.20708 -16.81327 -16.19083 -15.75132 -15.48769 -15.37973 -15.13142 -14.99665 -14.50278 -14.11032 -13.89684 -13.66646 -13.53231 -13.16181 -12.97116 -12.92535 -12.85483 -12.70728 -12.29868 -12.04364 -11.85811 -11.71906 -11.69123 -11.37908 -11.27280 -11.19613 -11.07798 -10.90905 -10.40678 -10.13522 -9.85718 -9.61730 -9.34123 -8.81104 -8.70257 -8.61527 -7.67233 -6.57434 -6.55798 -4.28070 1.82804 2.06583 2.39625 2.48317 2.84325 2.94943 3.06140 3.08972 3.15404 3.30781 3.54269 3.93928 3.98329 4.43751 4.49085 4.61528 4.69035 4.86530 4.94381 4.97344 5.01048 5.08052 5.18082 5.24156 5.37121 5.41446 5.44634 5.63086 5.65631 5.73272 5.87462 5.95413 6.06935 6.16676 6.20525 6.54603 6.61890 6.73134 6.83227 6.89161 7.09712 7.20530 7.24614 7.42102 7.66608 7.75228 8.09936 8.36154 8.92102 10.50193 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.002764 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.359029 B =10126.787548 C =11343.138189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 N -0.516 5.516 4 C 0.054 3.946 5 C -0.029 4.029 6 C 0.210 3.790 7 N -0.439 5.439 8 C 0.027 3.973 9 C 0.511 3.489 10 O -0.509 6.509 11 N -0.657 5.657 12 C 0.128 3.872 13 C -0.112 4.112 14 C -0.146 4.146 15 C -0.118 4.118 16 C -0.128 4.128 17 C -0.107 4.107 18 S 0.028 5.972 19 C -0.544 4.544 20 H 0.096 0.904 21 C 0.077 3.923 22 N -0.866 5.866 23 Si 0.925 3.075 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.411 0.589 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 4.251 -1.187 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.241 5.241 4 C -0.075 4.075 5 C -0.070 4.070 6 C -0.108 4.108 7 N -0.116 5.116 8 C -0.104 4.104 9 C 0.298 3.702 10 O -0.384 6.384 11 N -0.302 5.302 12 C 0.026 3.974 13 C -0.133 4.133 14 C -0.169 4.169 15 C -0.139 4.139 16 C -0.154 4.154 17 C -0.224 4.224 18 S 0.282 5.718 19 C -0.691 4.691 20 H 0.113 0.887 21 C -0.133 4.133 22 N -0.499 5.499 23 Si 0.750 3.250 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.248 0.752 39 H 0.156 0.844 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.155 0.845 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.203 5.201 -3.169 16.378 hybrid contribution 2.134 -1.048 1.161 2.646 sum -13.069 4.153 -2.008 13.859 Atomic orbital electron populations 1.21795 0.94787 1.01946 1.01937 1.22312 0.96199 0.87608 1.02223 1.61707 1.08666 1.16408 1.37321 1.22091 1.02471 0.91343 0.91578 1.19353 1.02291 0.93474 0.91858 1.29108 0.93471 0.93834 0.94364 1.81252 1.09477 1.09571 1.11301 1.22092 0.89824 1.03368 0.95069 1.20431 0.82034 0.78544 0.89216 1.90631 1.49764 1.46073 1.51963 1.43426 1.07913 1.66764 1.12123 1.17174 0.94180 1.02345 0.83749 1.21097 0.99836 1.01177 0.91207 1.20770 0.96750 1.03302 0.96104 1.20969 0.94163 1.00506 0.98289 1.21288 1.00715 1.02058 0.91345 1.22447 0.98028 1.01238 1.00730 1.83030 1.04822 1.77486 1.06450 1.23302 0.95339 1.52783 0.97645 0.88682 1.25087 0.98861 0.94116 0.95238 1.70001 1.27365 1.44809 1.07771 0.85998 0.80605 0.78510 0.79875 1.19136 1.20285 1.20259 0.93194 0.92217 0.91397 0.95095 0.88142 0.93547 0.88979 0.86034 0.87267 0.87144 0.91078 0.75197 0.84417 0.87020 0.87165 0.84458 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.59 37.16 0.36 -0.83 16 2 C 0.04 0.42 5.34 -3.82 -0.02 0.40 16 3 N -0.52 -4.43 4.29 -236.07 -1.01 -5.44 16 4 C 0.05 0.33 4.74 -3.82 -0.02 0.32 16 5 C -0.03 -0.15 5.50 -29.52 -0.16 -0.31 16 6 C 0.21 1.70 15.43 -20.76 -0.32 1.38 16 7 N -0.44 -5.03 18.54 42.15 0.78 -4.25 16 8 C 0.03 0.24 5.31 -4.98 -0.03 0.22 16 9 C 0.51 6.83 7.31 -10.99 -0.08 6.74 16 10 O -0.51 -8.13 11.51 5.54 0.06 -8.07 16 11 N -0.66 -9.97 5.17 -9.70 -0.05 -10.02 16 12 C 0.13 2.35 6.44 -83.44 -0.54 1.81 16 13 C -0.11 -1.95 8.72 -39.42 -0.34 -2.30 16 14 C -0.15 -2.41 10.04 -39.53 -0.40 -2.81 16 15 C -0.12 -2.05 10.03 -39.58 -0.40 -2.45 16 16 C -0.13 -2.59 9.26 -39.36 -0.36 -2.95 16 17 C -0.11 -2.23 6.12 -38.75 -0.24 -2.47 16 18 S 0.03 0.66 20.37 -107.50 -2.19 -1.53 16 19 C -0.54 -13.95 9.08 30.90 0.28 -13.67 16 20 H 0.10 2.36 4.81 -52.49 -0.25 2.11 16 21 C 0.08 1.98 5.49 -17.46 -0.10 1.88 16 22 N -0.87 -23.18 13.22 55.48 0.73 -22.45 16 23 Si 0.92 19.74 29.55 -169.99 -5.02 14.72 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H 0.05 0.34 6.51 -51.93 -0.34 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 1.25 5.81 -51.93 -0.30 0.94 16 32 H 0.05 0.27 8.13 -51.93 -0.42 -0.15 16 33 H 0.09 0.55 6.02 -51.93 -0.31 0.24 16 34 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.38 6.58 -51.93 -0.34 0.04 16 36 H 0.11 0.68 6.15 -51.93 -0.32 0.36 16 37 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 38 H 0.41 5.80 7.65 -40.82 -0.31 5.48 16 39 H 0.14 2.35 5.78 -52.49 -0.30 2.05 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.14 2.89 4.93 -52.49 -0.26 2.63 16 43 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -31.07 369.86 -8.74 -39.81 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.26 Total: 6.70 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.36 Total: -15.04 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.45 Total: -42.15 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.06 Total: -8.07 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.19 Total: -1.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.07 -8.74 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.740 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds