Wall clock time and date at job start Tue Mar 31 2020 18:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47208 * 2 1 4 4 C 1.46901 * 111.00027 * 298.56069 * 3 2 1 5 5 C 1.53001 * 109.47022 * 170.80579 * 4 3 2 6 6 C 1.47195 * 109.47432 * 185.09452 * 5 4 3 7 7 N 5.82159 * 84.07102 * 327.60941 * 2 1 3 8 8 C 1.46905 * 110.99819 * 174.60817 * 3 2 1 9 9 C 1.50693 * 109.47038 * 293.95315 * 8 3 2 10 10 O 1.21297 * 120.00354 * 0.02562 * 9 8 3 11 11 N 1.34775 * 119.99901 * 180.02562 * 9 8 3 12 12 C 1.39937 * 120.00118 * 174.17772 * 11 9 8 13 13 C 1.38682 * 120.11439 * 335.25285 * 12 11 9 14 14 C 1.38226 * 120.02079 * 179.97438 * 13 12 11 15 15 C 1.38385 * 120.24890 * 0.02562 * 14 13 12 16 16 C 1.38089 * 120.23241 * 359.97398 * 15 14 13 17 17 C 1.38987 * 119.97486 * 0.02562 * 16 15 14 18 18 S 1.76200 * 120.12558 * 180.02562 * 17 16 15 19 19 C 1.76200 * 99.99812 * 354.31482 * 18 17 16 20 20 H 1.07999 * 119.99858 * 5.03808 * 19 18 17 21 21 C 1.38689 * 120.00131 * 185.04067 * 19 18 17 22 22 N 1.31652 * 119.99567 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00105 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47442 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47254 * 119.99604 * 23 21 19 26 26 H 1.48500 * 109.47365 * 239.99637 * 23 21 19 27 27 H 1.09002 * 109.47228 * 65.13635 * 1 2 3 28 28 H 1.08994 * 109.47110 * 185.13369 * 1 2 3 29 29 H 1.09002 * 109.46882 * 305.13439 * 1 2 3 30 30 H 1.09005 * 109.46960 * 240.00353 * 2 1 3 31 31 H 1.08998 * 109.47388 * 120.00391 * 2 1 3 32 32 H 1.08997 * 109.47328 * 290.80504 * 4 3 2 33 33 H 1.08998 * 109.47060 * 50.80907 * 4 3 2 34 34 H 1.08999 * 109.47056 * 305.09856 * 5 4 3 35 35 H 1.09003 * 109.46802 * 65.09262 * 5 4 3 36 36 H 1.09004 * 109.46815 * 173.95339 * 8 3 2 37 37 H 1.09000 * 109.47015 * 53.95601 * 8 3 2 38 38 H 0.97003 * 120.00249 * 354.17256 * 11 9 8 39 39 H 1.08001 * 119.98686 * 0.25397 * 13 12 11 40 40 H 1.08004 * 119.87302 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.88826 * 179.97438 * 15 14 13 42 42 H 1.08002 * 120.01272 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5770 2.0999 -1.2045 5 6 1.9056 3.5876 -1.0643 6 6 1.3542 4.3225 -2.2143 7 7 0.9286 4.8895 -3.1019 8 6 3.4825 1.4261 0.1289 9 6 3.8821 0.9046 1.4850 10 8 3.0321 0.5345 2.2672 11 7 5.1841 0.8493 1.8289 12 6 5.5495 0.4812 3.1286 13 6 4.6633 0.6658 4.1792 14 6 5.0261 0.3010 5.4621 15 6 6.2728 -0.2487 5.7044 16 6 7.1633 -0.4372 4.6660 17 6 6.8084 -0.0737 3.3722 18 16 7.9413 -0.3131 2.0441 19 6 9.3563 -0.8556 2.9431 20 1 9.2884 -1.0218 4.0080 21 6 10.5572 -1.0692 2.2831 22 7 10.6398 -0.8670 0.9848 23 14 12.0571 -1.6450 3.2359 24 1 11.7040 -1.7972 4.6703 25 1 12.5146 -2.9510 2.6970 26 1 13.1454 -0.6441 3.0981 27 1 -0.3634 0.4321 -0.9324 28 1 -0.3633 -1.0235 0.0919 29 1 -0.3633 0.5914 0.8405 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0904 1.6951 -2.0766 33 1 0.5010 1.9754 -1.3261 34 1 1.4666 3.9714 -0.1434 35 1 2.9872 3.7194 -1.0336 36 1 3.8281 2.4540 0.0186 37 1 3.9331 0.8061 -0.6462 38 1 5.8679 1.0647 1.1755 39 1 3.6878 1.0906 3.9942 40 1 4.3343 0.4462 6.2787 41 1 6.5504 -0.5313 6.7092 42 1 8.1352 -0.8669 4.8590 43 1 11.4796 -1.0168 0.5231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:54 Heat of formation + Delta-G solvation = 9.888838 kcal Electronic energy + Delta-G solvation = -25168.976908 eV Core-core repulsion = 21533.016336 eV Total energy + Delta-G solvation = -3635.960572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48809 -39.61902 -38.50046 -37.36785 -35.65203 -34.69681 -33.00630 -31.94774 -31.75779 -30.21575 -27.84417 -27.46760 -24.70646 -23.86947 -23.43368 -21.88425 -21.01217 -20.08162 -18.70456 -18.32268 -18.06852 -17.55705 -17.00779 -16.56064 -16.43652 -16.15905 -15.71660 -15.66739 -15.28828 -15.12861 -14.69308 -14.53534 -14.45458 -14.29542 -14.01491 -13.65935 -13.47925 -13.36142 -13.30359 -12.98825 -12.83613 -12.77657 -12.64849 -12.49400 -12.26825 -12.08793 -11.88244 -11.60179 -11.47099 -11.38338 -11.29209 -10.60519 -10.50415 -10.31022 -9.30338 -9.07161 -8.47541 -8.28883 -6.20166 0.44886 0.59428 1.29731 1.38467 1.47776 1.62267 1.73540 1.76539 1.87049 2.09252 2.19912 2.80261 2.89344 3.05369 3.17556 3.36549 3.74379 3.99404 4.14698 4.16750 4.25469 4.32829 4.37802 4.47877 4.54275 4.57468 4.68840 4.71713 4.73885 4.78968 4.89199 5.00899 5.09912 5.16895 5.25476 5.38098 5.41602 5.49696 5.54079 5.71549 5.78464 5.94663 6.08943 6.16056 6.27837 6.57948 6.65097 6.98856 7.23925 8.61232 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.002764 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.359029 B =10126.787548 C =11343.138189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.522 5.522 4 C 0.057 3.943 5 C -0.023 4.023 6 C 0.241 3.759 7 N -0.503 5.503 8 C 0.032 3.968 9 C 0.510 3.490 10 O -0.535 6.535 11 N -0.661 5.661 12 C 0.133 3.867 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.121 4.121 16 C -0.144 4.144 17 C -0.131 4.131 18 S -0.011 6.011 19 C -0.562 4.562 20 H 0.095 0.905 21 C 0.027 3.973 22 N -0.901 5.901 23 Si 0.989 3.011 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.271 1.271 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 4.816 -0.209 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.247 5.247 4 C -0.072 4.072 5 C -0.063 4.063 6 C -0.076 4.076 7 N -0.181 5.181 8 C -0.098 4.098 9 C 0.299 3.701 10 O -0.411 6.411 11 N -0.306 5.306 12 C 0.031 3.969 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.170 4.170 17 C -0.248 4.248 18 S 0.240 5.760 19 C -0.709 4.709 20 H 0.113 0.887 21 C -0.179 4.179 22 N -0.536 5.536 23 Si 0.811 3.189 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.197 1.197 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.103 0.897 38 H 0.253 0.747 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.139 0.861 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.192 5.783 -2.175 17.331 hybrid contribution 2.219 -1.213 0.972 2.710 sum -13.973 4.570 -1.203 14.750 Atomic orbital electron populations 1.21745 0.93751 1.02057 1.02360 1.22213 0.97074 0.88141 1.00898 1.61661 1.08334 1.15929 1.38804 1.22100 1.02756 0.91606 0.90730 1.19508 1.03607 0.92232 0.90960 1.29548 0.91784 0.92499 0.93738 1.81290 1.11705 1.11699 1.13398 1.22176 0.90293 1.05247 0.92119 1.21275 0.80812 0.77369 0.90616 1.90616 1.50182 1.47012 1.53302 1.43573 1.08979 1.66885 1.11160 1.17379 0.93219 1.00783 0.85559 1.21329 0.99927 1.01523 0.91491 1.21232 0.96677 1.00594 0.96713 1.21249 0.93895 1.00112 0.98879 1.21349 1.00847 1.02597 0.92167 1.22409 0.98549 1.03650 1.00174 1.82829 1.05360 1.79426 1.08359 1.23643 0.96471 1.52788 0.98031 0.88721 1.25963 1.01586 0.94231 0.96099 1.70096 1.28142 1.46207 1.09141 0.85027 0.77059 0.78088 0.78691 1.18547 1.19843 1.19660 0.91613 0.92107 0.92275 0.94548 0.91309 0.92708 0.88689 0.84622 0.84938 0.83792 0.89698 0.74729 0.83683 0.83441 0.84175 0.86074 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.59 71.98 0.69 -1.38 16 2 C 0.04 0.78 5.34 86.30 0.46 1.24 16 3 N -0.52 -7.65 4.29 -900.78 -3.86 -11.51 16 4 C 0.06 0.52 4.74 86.30 0.41 0.93 16 5 C -0.02 -0.15 5.50 28.79 0.16 0.01 16 6 C 0.24 3.39 15.43 89.44 1.38 4.77 16 7 N -0.50 -11.08 18.54 20.00 0.37 -10.71 16 8 C 0.03 0.48 5.31 85.55 0.45 0.94 16 9 C 0.51 12.93 7.31 87.66 0.64 13.57 16 10 O -0.53 -16.52 11.51 -3.08 -0.04 -16.55 16 11 N -0.66 -19.63 5.17 -302.99 -1.57 -21.19 16 12 C 0.13 4.84 6.44 38.31 0.25 5.09 16 13 C -0.12 -4.03 8.72 22.37 0.20 -3.84 16 14 C -0.13 -3.93 10.04 22.30 0.22 -3.70 16 15 C -0.12 -3.96 10.03 22.27 0.22 -3.73 16 16 C -0.14 -5.84 9.26 22.41 0.21 -5.63 16 17 C -0.13 -5.54 6.12 22.81 0.14 -5.40 16 18 S -0.01 -0.51 20.37 -56.49 -1.15 -1.66 16 19 C -0.56 -29.66 9.08 67.93 0.62 -29.04 16 20 H 0.10 4.84 4.81 -2.91 -0.01 4.83 16 21 C 0.03 1.43 5.49 84.83 0.47 1.89 16 22 N -0.90 -49.31 13.22 21.63 0.29 -49.02 16 23 Si 0.99 40.86 29.55 68.60 2.03 42.89 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 27 H 0.06 0.75 6.51 -2.39 -0.02 0.73 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 1.69 5.81 -2.39 -0.01 1.67 16 32 H 0.05 0.45 8.13 -2.39 -0.02 0.43 16 33 H 0.09 0.86 6.02 -2.39 -0.01 0.85 16 34 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 0.33 6.58 -2.39 -0.02 0.32 16 36 H 0.14 1.20 6.15 -2.39 -0.01 1.19 16 37 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 38 H 0.42 11.61 7.65 -92.71 -0.71 10.90 16 39 H 0.15 4.67 5.78 -2.91 -0.02 4.66 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.12 5.23 4.93 -2.91 -0.01 5.22 16 43 H 0.28 14.02 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -69.92 369.86 2.94 -66.98 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.36 Total: 25.06 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 6.51 Total: -24.28 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -4.77 Total: -92.43 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.04 Total: -16.55 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.15 Total: -1.66 kcal Total: -69.92 2.94 -66.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds