Wall clock time and date at job start Tue Mar 31 2020 18:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46896 * 109.47539 * 2 1 4 4 C 1.46897 * 110.99915 * 287.73385 * 3 2 1 5 5 C 1.50699 * 109.47519 * 160.36304 * 4 3 2 6 6 H 1.08007 * 119.99881 * 4.66761 * 5 4 3 7 7 C 1.37876 * 120.00393 * 184.67111 * 5 4 3 8 8 N 1.31520 * 119.99862 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00051 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47277 * 59.99933 * 9 7 5 11 11 H 1.48502 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47093 * 299.99761 * 9 7 5 13 13 C 1.46893 * 111.00566 * 163.77590 * 3 2 1 14 14 C 1.50702 * 109.46925 * 293.95580 * 13 3 2 15 15 O 1.21263 * 120.00211 * 359.97438 * 14 13 3 16 16 N 1.34779 * 120.00192 * 179.97438 * 14 13 3 17 17 C 1.46507 * 119.99772 * 359.97438 * 16 14 13 18 18 C 1.38541 * 120.00347 * 179.97438 * 16 14 13 19 19 N 1.28786 * 124.80999 * 359.97438 * 18 16 14 20 20 C 1.34751 * 117.91555 * 180.02562 * 19 18 16 21 21 C 1.41124 * 128.75121 * 179.97438 * 20 19 18 22 22 C 1.37173 * 120.43412 * 180.02562 * 21 20 19 23 23 C 1.38743 * 120.60761 * 0.02562 * 22 21 20 24 24 C 1.37690 * 119.98483 * 359.97438 * 23 22 21 25 25 C 1.39288 * 120.19795 * 0.03111 * 24 23 22 26 26 S 1.75809 * 124.81377 * 179.97438 * 18 16 14 27 27 H 1.09002 * 109.46813 * 299.21518 * 1 2 3 28 28 H 1.09001 * 109.46902 * 59.21420 * 1 2 3 29 29 H 1.08996 * 109.46840 * 179.21822 * 1 2 3 30 30 H 1.09002 * 109.46973 * 240.00093 * 2 1 3 31 31 H 1.08997 * 109.47056 * 120.00394 * 2 1 3 32 32 H 1.09001 * 109.47163 * 280.36018 * 4 3 2 33 33 H 1.08998 * 109.47449 * 40.36090 * 4 3 2 34 34 H 0.97003 * 119.99911 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47800 * 173.95543 * 13 3 2 36 36 H 1.09003 * 109.46934 * 53.94995 * 13 3 2 37 37 H 1.08994 * 109.47355 * 270.00481 * 17 16 14 38 38 H 1.09003 * 109.46888 * 30.00287 * 17 16 14 39 39 H 1.08995 * 109.47129 * 149.99669 * 17 16 14 40 40 H 1.07998 * 119.78683 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.69684 * 179.72293 * 22 21 20 42 42 H 1.07990 * 120.00973 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.90170 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8015 2.0205 -1.3062 5 6 1.8523 3.5186 -1.1508 6 1 2.1035 3.9541 -0.1950 7 6 1.5780 4.3332 -2.2288 8 7 1.2725 3.8029 -3.3929 9 14 1.6417 6.1902 -2.0363 10 1 3.0066 6.5978 -1.6167 11 1 1.3099 6.8339 -3.3327 12 1 0.6597 6.6150 -1.0065 13 6 3.4367 1.4423 0.3831 14 6 3.5869 1.0090 1.8187 15 8 2.6098 0.6847 2.4595 16 7 4.8071 0.9817 2.3903 17 6 5.9877 1.3729 1.6160 18 6 4.9451 0.5839 3.7102 19 7 3.9736 0.2225 4.4745 20 6 4.2666 -0.1382 5.7394 21 6 3.3923 -0.5676 6.7605 22 6 3.8796 -0.8957 8.0001 23 6 5.2378 -0.8105 8.2704 24 6 6.1098 -0.3940 7.2896 25 6 5.6328 -0.0568 6.0252 26 16 6.4712 0.5007 4.5791 27 1 -0.3633 0.5016 0.8970 28 1 -0.3633 0.5260 -0.8829 29 1 -0.3633 -1.0276 -0.0140 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.5787 1.7007 -2.0003 33 1 0.8256 1.7283 -1.6939 34 1 1.0798 4.3761 -4.1514 35 1 3.8023 2.4631 0.2717 36 1 4.0141 0.7775 -0.2593 37 1 6.4021 0.4966 1.1177 38 1 5.7032 2.1146 0.8696 39 1 6.7359 1.7987 2.2844 40 1 2.3325 -0.6384 6.5648 41 1 3.1992 -1.2186 8.7742 42 1 5.6109 -1.0707 9.2498 43 1 7.1668 -0.3286 7.5014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:33 Heat of formation + Delta-G solvation = 51.994391 kcal Electronic energy + Delta-G solvation = -25793.814868 eV Core-core repulsion = 22159.680130 eV Total energy + Delta-G solvation = -3634.134739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72029 -39.76147 -37.28462 -36.14471 -35.40918 -32.63407 -31.21072 -30.64617 -29.70575 -28.03881 -27.10302 -25.88651 -24.30523 -22.98841 -22.57120 -22.02631 -20.08966 -19.01710 -18.71783 -17.32400 -16.80641 -16.49183 -16.22296 -15.78627 -15.45524 -14.88001 -14.70578 -14.49212 -14.36483 -13.99542 -13.87941 -13.72928 -13.12540 -12.98998 -12.80998 -12.60859 -12.32998 -12.19495 -12.08295 -11.74747 -11.38044 -11.18224 -11.05264 -10.96986 -10.82472 -10.63150 -10.33475 -10.27313 -10.09851 -9.96894 -9.70999 -9.32306 -9.03893 -8.45174 -8.34355 -8.10087 -7.32191 -6.06029 -4.07965 0.34394 0.75415 0.95954 1.42959 2.18299 2.46504 2.93990 3.30843 3.35915 3.39481 3.59133 4.05035 4.39220 4.48647 4.68999 4.72750 4.79192 4.88761 5.00531 5.09514 5.16062 5.29565 5.31001 5.37645 5.65276 5.70160 5.80734 5.86088 5.92266 5.97135 6.06165 6.18946 6.21236 6.23384 6.42466 6.48661 6.69932 6.86328 6.93072 7.14951 7.25998 7.69280 7.77244 8.03066 8.11253 8.25767 8.48126 8.99090 9.56523 11.04179 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.002817 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.855331 B = 9938.123764 C =10514.823101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 N -0.520 5.520 4 C 0.192 3.808 5 C -0.509 4.509 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.055 3.945 14 C 0.505 3.495 15 O -0.443 6.443 16 N -0.533 5.533 17 C 0.066 3.934 18 C 0.356 3.644 19 N -0.476 5.476 20 C 0.118 3.882 21 C -0.073 4.073 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.065 4.065 25 C -0.188 4.188 26 S 0.045 5.955 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.018 0.982 31 H 0.068 0.932 32 H -0.009 1.009 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.268 -9.727 17.686 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 N -0.246 5.246 4 C 0.068 3.932 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.077 4.077 14 C 0.290 3.710 15 O -0.308 6.308 16 N -0.265 5.265 17 C -0.076 4.076 18 C -0.018 4.018 19 N -0.197 5.197 20 C -0.002 4.002 21 C -0.094 4.094 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.088 4.088 25 C -0.307 4.307 26 S 0.295 5.705 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.009 0.991 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.813 -9.331 17.506 23.616 hybrid contribution 0.063 0.432 -0.114 0.451 sum 12.876 -8.899 17.392 23.398 Atomic orbital electron populations 1.21667 0.95207 0.99862 1.02818 1.22088 0.96627 0.89976 0.99128 1.61865 1.12621 1.15701 1.34383 1.19841 0.96984 0.94225 0.82140 1.21124 1.46890 0.90589 0.96162 0.92016 1.24972 0.95329 0.98951 0.95187 1.69943 1.47436 1.35429 1.00915 0.86576 0.78558 0.85153 0.77219 1.20291 1.21356 1.20136 1.21915 0.93796 1.03201 0.88749 1.21759 0.80982 0.77646 0.90565 1.90767 1.35903 1.41000 1.63097 1.45707 1.10538 1.63693 1.06589 1.22223 0.86165 1.02374 0.96873 1.24143 0.90604 0.96769 0.90269 1.66466 1.30780 1.19279 1.03209 1.19066 0.90733 1.00261 0.90170 1.20728 0.99547 0.98313 0.90838 1.20942 0.95732 0.99515 0.96210 1.21036 0.93260 1.00649 0.98947 1.20248 0.99926 0.98759 0.89905 1.23548 0.96724 1.11081 0.99335 1.84738 1.09782 1.71553 1.04420 0.92156 0.92251 0.93756 0.96413 0.91378 0.99105 0.93862 0.92810 0.86597 0.92658 0.90506 0.87811 0.90283 0.84672 0.84888 0.84976 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.99 37.16 0.37 -2.25 16 2 C 0.05 0.99 5.23 -3.82 -0.02 0.97 16 3 N -0.52 -11.39 4.12 -237.53 -0.98 -12.37 16 4 C 0.19 4.85 4.59 -4.98 -0.02 4.83 16 5 C -0.51 -13.88 8.61 -34.44 -0.30 -14.18 16 6 H 0.06 1.68 7.66 -52.48 -0.40 1.28 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 1.00 3.83 -4.98 -0.02 0.98 16 14 C 0.50 9.05 7.19 -10.98 -0.08 8.97 16 15 O -0.44 -9.55 13.10 5.57 0.07 -9.48 16 16 N -0.53 -7.74 3.06 -123.71 -0.38 -8.12 16 17 C 0.07 0.62 9.94 59.85 0.59 1.22 16 18 C 0.36 5.44 7.81 -88.47 -0.69 4.75 16 19 N -0.48 -8.35 8.63 -11.05 -0.10 -8.45 16 20 C 0.12 1.75 6.94 -84.90 -0.59 1.17 16 21 C -0.07 -0.90 10.10 -38.87 -0.39 -1.29 16 22 C -0.10 -0.93 9.99 -39.78 -0.40 -1.33 16 23 C -0.12 -0.96 10.05 -39.60 -0.40 -1.36 16 24 C -0.07 -0.63 10.06 -39.39 -0.40 -1.02 16 25 C -0.19 -2.36 6.52 -38.60 -0.25 -2.61 16 26 S 0.04 0.52 21.91 -107.50 -2.36 -1.84 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.20 6.53 -51.93 -0.34 0.86 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 31 H 0.07 1.35 5.81 -51.93 -0.30 1.05 16 32 H -0.01 -0.23 8.00 -51.93 -0.42 -0.64 16 33 H 0.04 1.18 6.26 -51.93 -0.32 0.85 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.12 2.08 6.58 -51.93 -0.34 1.74 16 36 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.92 6.44 -51.93 -0.33 0.58 16 39 H 0.08 0.61 7.05 -51.93 -0.37 0.24 16 40 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -34.24 366.70 -10.94 -45.17 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.76 Total: -1.75 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.68 Total: 0.32 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.72 Total: -54.16 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.36 Total: -1.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.24 -10.94 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.165 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds