Wall clock time and date at job start Tue Mar 31 2020 18:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46896 * 109.47539 * 2 1 4 4 C 1.46897 * 110.99915 * 287.73385 * 3 2 1 5 5 C 1.50699 * 109.47519 * 160.36304 * 4 3 2 6 6 H 1.08007 * 119.99881 * 4.66761 * 5 4 3 7 7 C 1.37876 * 120.00393 * 184.67111 * 5 4 3 8 8 N 1.31520 * 119.99862 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00051 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47277 * 59.99933 * 9 7 5 11 11 H 1.48502 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47093 * 299.99761 * 9 7 5 13 13 C 1.46893 * 111.00566 * 163.77590 * 3 2 1 14 14 C 1.50702 * 109.46925 * 293.95580 * 13 3 2 15 15 O 1.21263 * 120.00211 * 359.97438 * 14 13 3 16 16 N 1.34779 * 120.00192 * 179.97438 * 14 13 3 17 17 C 1.46507 * 119.99772 * 359.97438 * 16 14 13 18 18 C 1.38541 * 120.00347 * 179.97438 * 16 14 13 19 19 N 1.28786 * 124.80999 * 359.97438 * 18 16 14 20 20 C 1.34751 * 117.91555 * 180.02562 * 19 18 16 21 21 C 1.41124 * 128.75121 * 179.97438 * 20 19 18 22 22 C 1.37173 * 120.43412 * 180.02562 * 21 20 19 23 23 C 1.38743 * 120.60761 * 0.02562 * 22 21 20 24 24 C 1.37690 * 119.98483 * 359.97438 * 23 22 21 25 25 C 1.39288 * 120.19795 * 0.03111 * 24 23 22 26 26 S 1.75809 * 124.81377 * 179.97438 * 18 16 14 27 27 H 1.09002 * 109.46813 * 299.21518 * 1 2 3 28 28 H 1.09001 * 109.46902 * 59.21420 * 1 2 3 29 29 H 1.08996 * 109.46840 * 179.21822 * 1 2 3 30 30 H 1.09002 * 109.46973 * 240.00093 * 2 1 3 31 31 H 1.08997 * 109.47056 * 120.00394 * 2 1 3 32 32 H 1.09001 * 109.47163 * 280.36018 * 4 3 2 33 33 H 1.08998 * 109.47449 * 40.36090 * 4 3 2 34 34 H 0.97003 * 119.99911 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47800 * 173.95543 * 13 3 2 36 36 H 1.09003 * 109.46934 * 53.94995 * 13 3 2 37 37 H 1.08994 * 109.47355 * 270.00481 * 17 16 14 38 38 H 1.09003 * 109.46888 * 30.00287 * 17 16 14 39 39 H 1.08995 * 109.47129 * 149.99669 * 17 16 14 40 40 H 1.07998 * 119.78683 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.69684 * 179.72293 * 22 21 20 42 42 H 1.07990 * 120.00973 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.90170 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8015 2.0205 -1.3062 5 6 1.8523 3.5186 -1.1508 6 1 2.1035 3.9541 -0.1950 7 6 1.5780 4.3332 -2.2288 8 7 1.2725 3.8029 -3.3929 9 14 1.6417 6.1902 -2.0363 10 1 3.0066 6.5978 -1.6167 11 1 1.3099 6.8339 -3.3327 12 1 0.6597 6.6150 -1.0065 13 6 3.4367 1.4423 0.3831 14 6 3.5869 1.0090 1.8187 15 8 2.6098 0.6847 2.4595 16 7 4.8071 0.9817 2.3903 17 6 5.9877 1.3729 1.6160 18 6 4.9451 0.5839 3.7102 19 7 3.9736 0.2225 4.4745 20 6 4.2666 -0.1382 5.7394 21 6 3.3923 -0.5676 6.7605 22 6 3.8796 -0.8957 8.0001 23 6 5.2378 -0.8105 8.2704 24 6 6.1098 -0.3940 7.2896 25 6 5.6328 -0.0568 6.0252 26 16 6.4712 0.5007 4.5791 27 1 -0.3633 0.5016 0.8970 28 1 -0.3633 0.5260 -0.8829 29 1 -0.3633 -1.0276 -0.0140 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.5787 1.7007 -2.0003 33 1 0.8256 1.7283 -1.6939 34 1 1.0798 4.3761 -4.1514 35 1 3.8023 2.4631 0.2717 36 1 4.0141 0.7775 -0.2593 37 1 6.4021 0.4966 1.1177 38 1 5.7032 2.1146 0.8696 39 1 6.7359 1.7987 2.2844 40 1 2.3325 -0.6384 6.5648 41 1 3.1992 -1.2186 8.7742 42 1 5.6109 -1.0707 9.2498 43 1 7.1668 -0.3286 7.5014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081515188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:32 Heat of formation + Delta-G solvation = 30.674357 kcal Electronic energy + Delta-G solvation = -25794.739375 eV Core-core repulsion = 22159.680130 eV Total energy + Delta-G solvation = -3635.059245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85427 -40.81710 -38.60542 -37.51719 -36.52317 -34.71439 -32.12595 -32.00305 -30.79780 -29.73492 -28.00665 -27.50685 -25.47279 -24.47596 -23.85689 -22.99931 -21.70285 -20.23401 -19.62797 -18.62905 -18.42023 -17.81469 -17.41055 -16.92747 -16.53388 -16.29707 -16.20477 -15.78096 -15.55073 -15.32065 -15.06454 -14.78847 -14.48834 -14.27680 -14.18750 -13.71029 -13.48705 -13.38154 -13.29486 -13.01131 -12.91108 -12.79203 -12.68513 -12.59369 -12.31582 -12.10250 -11.91259 -11.71703 -11.41562 -11.14961 -11.12836 -10.91406 -10.58025 -10.30258 -9.19376 -9.08275 -9.02355 -8.17602 -6.27355 -0.60192 -0.22146 0.16186 0.50115 1.14627 1.42317 1.45259 1.45869 1.53297 1.74066 2.41712 2.73414 2.94564 3.14689 3.29572 3.55493 3.69046 4.00211 4.10394 4.18962 4.20691 4.31819 4.35357 4.36869 4.44104 4.49129 4.58052 4.65417 4.70205 4.86645 4.91269 4.94805 5.02666 5.19978 5.21549 5.26397 5.29529 5.33307 5.43372 5.64786 5.67725 5.85482 6.07484 6.31173 6.54861 6.69559 6.86244 6.97481 7.41852 8.92246 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.002817 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.855331 B = 9938.123764 C =10514.823101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.540 5.540 4 C 0.210 3.790 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.058 3.942 14 C 0.509 3.491 15 O -0.492 6.492 16 N -0.531 5.531 17 C 0.055 3.945 18 C 0.321 3.679 19 N -0.523 5.523 20 C 0.074 3.926 21 C -0.099 4.099 22 C -0.092 4.092 23 C -0.101 4.101 24 C -0.069 4.069 25 C -0.206 4.206 26 S 0.112 5.888 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.069 0.931 32 H -0.022 1.022 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.166 0.834 42 H 0.175 0.825 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.981 -9.821 20.096 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.074 4.074 3 N -0.265 5.265 4 C 0.085 3.915 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.203 1.203 13 C -0.073 4.073 14 C 0.296 3.704 15 O -0.360 6.360 16 N -0.263 5.263 17 C -0.085 4.085 18 C -0.052 4.052 19 N -0.245 5.245 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.092 4.092 25 C -0.325 4.325 26 S 0.363 5.637 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.087 0.913 32 H -0.004 1.004 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 15.593 -9.432 19.936 27.010 hybrid contribution -0.703 0.356 -0.656 1.026 sum 14.890 -9.076 19.280 25.996 Atomic orbital electron populations 1.21619 0.94905 1.01343 1.01081 1.22077 0.96932 0.89010 0.99387 1.61721 1.15503 1.16949 1.32331 1.19464 0.94996 0.93681 0.83409 1.21381 1.46846 0.91801 0.96022 0.92459 1.25791 0.94807 1.03645 0.94777 1.70059 1.48225 1.37125 1.01659 0.85538 0.79117 0.79448 0.77127 1.18639 1.20842 1.20324 1.21900 0.91900 1.03854 0.89694 1.21543 0.81677 0.77071 0.90156 1.90742 1.37837 1.43445 1.64025 1.45579 1.10608 1.63099 1.06974 1.22590 0.84966 1.03763 0.97142 1.24367 0.92599 0.97911 0.90371 1.66408 1.33399 1.19843 1.04810 1.19363 0.92524 1.02605 0.90015 1.20934 0.99133 0.99886 0.92098 1.21368 0.97072 0.97515 0.95301 1.21592 0.92448 0.97952 1.00238 1.20739 1.01795 0.97862 0.88789 1.23954 0.96127 1.11469 1.00981 1.84272 1.06167 1.70620 1.02690 0.93630 0.94030 0.90702 0.95578 0.91289 1.00441 0.96584 0.92650 0.86660 0.90139 0.88143 0.87300 0.88295 0.85857 0.81679 0.80721 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.99 71.98 0.72 -4.46 16 2 C 0.05 2.19 5.23 86.31 0.45 2.64 16 3 N -0.54 -24.42 4.12 -905.39 -3.73 -28.14 16 4 C 0.21 10.95 4.59 85.56 0.39 11.34 16 5 C -0.52 -29.07 8.61 25.60 0.22 -28.85 16 6 H 0.06 3.18 7.66 -2.91 -0.02 3.15 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.06 2.13 3.83 85.56 0.33 2.46 16 14 C 0.51 18.84 7.19 87.66 0.63 19.47 16 15 O -0.49 -22.35 13.10 -2.98 -0.04 -22.38 16 16 N -0.53 -15.54 3.06 -663.72 -2.03 -17.57 16 17 C 0.06 0.98 9.94 127.77 1.27 2.25 16 18 C 0.32 9.94 7.81 179.60 1.40 11.34 16 19 N -0.52 -19.17 8.63 -188.86 -1.63 -20.80 16 20 C 0.07 2.25 6.94 39.79 0.28 2.53 16 21 C -0.10 -2.48 10.10 22.73 0.23 -2.25 16 22 C -0.09 -1.44 9.99 22.14 0.22 -1.22 16 23 C -0.10 -1.25 10.05 22.26 0.22 -1.02 16 24 C -0.07 -1.09 10.06 22.39 0.23 -0.87 16 25 C -0.21 -4.90 6.52 22.91 0.15 -4.75 16 26 S 0.11 2.41 21.91 -56.49 -1.24 1.17 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.75 6.53 -2.39 -0.02 1.74 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 31 H 0.07 2.82 5.81 -2.39 -0.01 2.81 16 32 H -0.02 -1.18 8.00 -2.39 -0.02 -1.20 16 33 H 0.02 0.92 6.26 -2.39 -0.01 0.90 16 34 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.12 4.20 6.58 -2.39 -0.02 4.19 16 36 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.81 6.44 -2.39 -0.02 1.79 16 39 H 0.10 1.33 7.05 -2.39 -0.02 1.31 16 40 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.18 0.71 8.06 -2.92 -0.02 0.69 16 43 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -78.53 366.70 1.87 -76.66 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.03 Total: 10.21 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 7.20 Total: 9.53 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -7.10 Total: -120.90 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.04 Total: -22.38 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.24 Total: 1.17 kcal Total: -78.53 1.87 -76.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.331 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds