Wall clock time and date at job start Tue Mar 31 2020 19:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47081 * 2 1 4 4 C 1.36908 * 120.00255 * 262.66073 * 3 2 1 5 5 H 1.08001 * 120.00154 * 194.82449 * 4 3 2 6 6 C 1.39019 * 119.99828 * 14.81381 * 4 3 2 7 7 N 1.31389 * 119.99782 * 11.71442 * 6 4 3 8 8 Si 1.86799 * 119.99919 * 191.70763 * 6 4 3 9 9 H 1.48503 * 109.46929 * 90.00501 * 8 6 4 10 10 H 1.48497 * 109.46924 * 210.00386 * 8 6 4 11 11 H 1.48503 * 109.47330 * 330.00487 * 8 6 4 12 12 C 1.34779 * 119.99698 * 82.65736 * 3 2 1 13 13 O 1.21641 * 119.99765 * 184.63352 * 12 3 2 14 14 C 1.47359 * 120.00185 * 4.63930 * 12 3 2 15 15 N 1.32056 * 126.45326 * 3.77082 * 14 12 3 16 16 N 1.28464 * 110.20693 * 180.02562 * 15 14 12 17 17 C 1.40114 * 124.92883 * 180.02562 * 16 15 14 18 18 C 1.38891 * 120.04383 * 309.88654 * 17 16 15 19 19 C 1.38072 * 119.95304 * 179.69835 * 18 17 16 20 20 C 1.38525 * 120.04132 * 0.59392 * 19 18 17 21 21 F 1.35103 * 119.94864 * 179.70137 * 20 19 18 22 22 C 1.38470 * 120.09227 * 359.67911 * 20 19 18 23 23 C 1.38114 * 120.04123 * 0.02562 * 22 20 19 24 24 C 1.50702 * 120.01897 * 180.02562 * 23 22 20 25 25 C 1.36116 * 110.14406 * 0.02562 * 16 15 14 26 26 C 1.35750 * 107.07542 * 0.26003 * 25 16 15 27 27 O 1.36080 * 127.26254 * 179.74177 * 26 25 16 28 28 H 1.09000 * 109.47380 * 300.00144 * 1 2 3 29 29 H 1.09000 * 109.46965 * 60.00056 * 1 2 3 30 30 H 1.08998 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47380 * 239.99856 * 2 1 3 32 32 H 1.09000 * 109.46965 * 119.99944 * 2 1 3 33 33 H 0.96999 * 119.99880 * 179.97438 * 7 6 4 34 34 H 1.07996 * 120.02106 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.97656 * 180.29821 * 19 18 17 36 36 H 1.08000 * 119.98241 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.47306 * 274.09786 * 24 23 22 38 38 H 1.08996 * 109.47270 * 34.10231 * 24 23 22 39 39 H 1.09000 * 109.46621 * 154.09468 * 24 23 22 40 40 H 1.07999 * 126.46623 * 180.02562 * 25 16 15 41 41 H 0.96701 * 114.00016 * 90.02074 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3893 1.9762 -1.1759 5 1 2.9659 2.8892 -1.1608 6 6 2.0239 1.4049 -2.3895 7 7 1.1382 0.4348 -2.4187 8 14 2.7920 2.0165 -3.9786 9 1 4.0228 1.2367 -4.2657 10 1 1.8260 1.8450 -5.0933 11 1 3.1379 3.4540 -3.8401 12 6 2.1023 2.0662 1.1577 13 8 2.4269 3.2385 1.1485 14 6 1.8009 1.3951 2.4345 15 7 1.5061 0.1185 2.5994 16 7 1.2987 -0.1320 3.8422 17 6 0.9647 -1.3895 4.3623 18 6 -0.0731 -2.1213 3.7997 19 6 -0.3966 -3.3629 4.3097 20 6 0.3051 -3.8735 5.3894 21 9 -0.0169 -5.0860 5.8908 22 6 1.3365 -3.1430 5.9553 23 6 1.6671 -1.9032 5.4442 24 6 2.7900 -1.1089 6.0600 25 6 1.4506 1.0013 4.5806 26 6 1.7656 2.0004 3.7171 27 8 2.0012 3.3062 4.0187 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8830 0.0364 -3.2654 34 1 -0.6232 -1.7217 2.9607 35 1 -1.2004 -3.9343 3.8695 36 1 1.8827 -3.5429 6.7967 37 1 2.4070 -0.5290 6.8996 38 1 3.5657 -1.7890 6.4119 39 1 3.2096 -0.4343 5.3137 40 1 1.3378 1.0900 5.6510 41 1 2.9279 3.5044 4.2112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081713118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:25 Heat of formation + Delta-G solvation = 21.836429 kcal Electronic energy + Delta-G solvation = -28895.188547 eV Core-core repulsion = 24693.532885 eV Total energy + Delta-G solvation = -4201.655662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.21739 -42.58043 -39.48222 -38.12352 -36.82179 -34.90944 -33.55573 -32.75319 -31.68613 -29.79452 -29.28936 -29.06983 -27.33301 -25.40956 -23.69773 -22.54385 -22.10340 -21.56031 -20.95929 -19.31572 -18.10397 -17.52638 -17.07529 -17.06450 -16.77325 -16.03946 -15.92544 -15.25128 -14.81151 -14.57402 -14.27611 -14.13493 -13.87685 -13.70567 -13.66206 -13.63440 -13.32194 -13.16046 -12.77654 -12.52777 -12.25543 -12.10282 -11.72916 -11.50326 -11.36404 -11.14930 -10.92199 -10.72244 -10.33079 -10.12709 -10.09810 -9.46626 -9.43664 -9.29220 -8.83565 -8.74726 -8.50147 -8.19661 -7.63126 -6.28048 -3.80954 0.51798 0.79520 2.04958 2.38214 2.52986 3.11044 3.20383 3.25030 3.30813 3.83812 4.09094 4.26805 4.33155 4.38889 4.49919 4.70499 4.82802 4.87246 4.97865 5.14363 5.20942 5.24530 5.29410 5.41279 5.48682 5.68090 5.71432 5.76694 5.80634 5.98249 6.04189 6.35068 6.44334 6.65480 6.80332 6.89001 6.98260 7.19355 7.42503 7.56831 7.84548 8.04134 8.12030 8.26723 8.57886 9.18437 9.44343 10.03738 10.65416 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.003677 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.075129 B = 7613.921285 C = 9051.164643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.108 3.892 3 N -0.415 5.415 4 C -0.292 4.292 5 H 0.104 0.896 6 C 0.026 3.974 7 N -0.865 5.865 8 Si 0.931 3.069 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.503 3.497 13 O -0.582 6.582 14 C 0.020 3.980 15 N -0.248 5.248 16 N -0.253 5.253 17 C 0.131 3.869 18 C -0.063 4.063 19 C -0.144 4.144 20 C 0.107 3.893 21 F -0.136 7.136 22 C -0.143 4.143 23 C -0.050 4.050 24 C -0.124 4.124 25 C -0.046 4.046 26 C 0.040 3.960 27 O -0.453 6.453 28 H 0.017 0.983 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.267 0.733 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.179 0.821 41 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -9.842 16.591 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.015 4.015 3 N -0.132 5.132 4 C -0.421 4.421 5 H 0.122 0.878 6 C -0.177 4.177 7 N -0.505 5.505 8 Si 0.758 3.242 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.290 3.710 13 O -0.466 6.466 14 C -0.143 4.143 15 N -0.080 5.080 16 N -0.036 5.036 17 C 0.041 3.959 18 C -0.083 4.083 19 C -0.163 4.163 20 C 0.088 3.912 21 F -0.114 7.114 22 C -0.162 4.162 23 C -0.052 4.052 24 C -0.180 4.180 25 C -0.186 4.186 26 C -0.015 4.015 27 O -0.258 6.258 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.196 0.804 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.206 -10.387 15.807 18.953 hybrid contribution 0.601 0.516 -0.177 0.812 sum -0.604 -9.871 15.630 18.496 Atomic orbital electron populations 1.21916 0.97004 0.99067 1.00838 1.21908 0.94505 0.82998 1.02124 1.43753 1.52554 1.11703 1.05165 1.19871 1.30514 1.09681 0.82040 0.87786 1.25368 0.95906 0.96848 0.99610 1.70095 1.28690 1.25117 1.26572 0.85832 0.78576 0.79434 0.80345 1.20336 1.20890 1.19301 1.16571 0.86957 0.85901 0.81530 1.90638 1.54984 1.15199 1.85826 1.23218 1.04866 0.89344 0.96851 1.74318 1.19092 1.17273 0.97338 1.42315 1.50794 1.05672 1.04866 1.17267 0.97326 0.84699 0.96626 1.21060 0.94434 0.93402 0.99411 1.21047 1.01975 0.96522 0.96775 1.17729 0.96719 0.81754 0.95025 1.91520 1.91952 1.41455 1.86513 1.20820 0.98625 0.94459 1.02339 1.19637 0.96298 0.94243 0.95023 1.20980 0.95631 1.00083 1.01314 1.22776 1.11059 0.86124 0.98675 1.18134 1.07980 0.85291 0.90130 1.84880 1.31326 1.19321 1.90242 0.96386 0.90052 0.94901 0.87906 0.91567 0.92221 0.83447 0.83610 0.83755 0.90058 0.90425 0.90441 0.80423 0.76303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.29 37.16 0.35 -2.61 16 2 C 0.11 2.59 4.88 -4.04 -0.02 2.57 16 3 N -0.42 -11.12 2.64 -116.05 -0.31 -11.43 16 4 C -0.29 -8.19 9.42 -15.00 -0.14 -8.33 16 5 H 0.10 3.03 7.32 -52.49 -0.38 2.64 16 6 C 0.03 0.67 5.15 -17.45 -0.09 0.58 16 7 N -0.86 -22.25 8.12 55.50 0.45 -21.80 16 8 Si 0.93 20.47 29.57 -169.99 -5.03 15.45 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 12 C 0.50 13.34 7.55 -12.55 -0.09 13.25 16 13 O -0.58 -16.96 16.18 3.17 0.05 -16.91 16 14 C 0.02 0.44 6.52 -82.67 -0.54 -0.10 16 15 N -0.25 -4.79 7.50 33.45 0.25 -4.54 16 16 N -0.25 -3.93 3.00 -10.40 -0.03 -3.96 16 17 C 0.13 1.67 6.09 -83.60 -0.51 1.16 16 18 C -0.06 -0.75 9.85 -39.40 -0.39 -1.14 16 19 C -0.14 -1.41 10.02 -39.54 -0.40 -1.80 16 20 C 0.11 1.04 7.30 -39.39 -0.29 0.75 16 21 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 22 C -0.14 -1.26 9.69 -39.54 -0.38 -1.64 16 23 C -0.05 -0.50 5.87 -104.44 -0.61 -1.11 16 24 C -0.12 -1.01 8.64 36.01 0.31 -0.70 16 25 C -0.05 -0.67 9.07 -16.54 -0.15 -0.82 16 26 C 0.04 0.75 7.35 -39.08 -0.29 0.46 16 27 O -0.45 -8.03 13.21 -22.06 -0.29 -8.33 16 28 H 0.02 0.40 7.31 -51.93 -0.38 0.02 16 29 H 0.08 2.06 6.36 -51.93 -0.33 1.73 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 2.62 5.77 -51.93 -0.30 2.32 16 32 H 0.07 1.50 5.12 -51.93 -0.27 1.24 16 33 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.08 0.51 7.95 -51.93 -0.41 0.10 16 38 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 39 H 0.08 0.79 6.34 -51.93 -0.33 0.46 16 40 H 0.18 1.87 7.51 -52.49 -0.39 1.48 16 41 H 0.38 5.00 9.07 45.56 0.41 5.41 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -32.98 346.97 -6.51 -39.49 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.63 Total: 7.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -3.24 Total: 0.51 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.36 Total: -41.73 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.24 Total: -25.24 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.98 -6.51 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081713118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.326 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds