Wall clock time and date at job start Tue Mar 31 2020 19:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47081 * 2 1 4 4 C 1.36908 * 120.00255 * 262.66073 * 3 2 1 5 5 H 1.08001 * 120.00154 * 194.82449 * 4 3 2 6 6 C 1.39019 * 119.99828 * 14.81381 * 4 3 2 7 7 N 1.31389 * 119.99782 * 11.71442 * 6 4 3 8 8 Si 1.86799 * 119.99919 * 191.70763 * 6 4 3 9 9 H 1.48503 * 109.46929 * 90.00501 * 8 6 4 10 10 H 1.48497 * 109.46924 * 210.00386 * 8 6 4 11 11 H 1.48503 * 109.47330 * 330.00487 * 8 6 4 12 12 C 1.34779 * 119.99698 * 82.65736 * 3 2 1 13 13 O 1.21641 * 119.99765 * 184.63352 * 12 3 2 14 14 C 1.47359 * 120.00185 * 4.63930 * 12 3 2 15 15 N 1.32056 * 126.45326 * 3.77082 * 14 12 3 16 16 N 1.28464 * 110.20693 * 180.02562 * 15 14 12 17 17 C 1.40114 * 124.92883 * 180.02562 * 16 15 14 18 18 C 1.38891 * 120.04383 * 309.88654 * 17 16 15 19 19 C 1.38072 * 119.95304 * 179.69835 * 18 17 16 20 20 C 1.38525 * 120.04132 * 0.59392 * 19 18 17 21 21 F 1.35103 * 119.94864 * 179.70137 * 20 19 18 22 22 C 1.38470 * 120.09227 * 359.67911 * 20 19 18 23 23 C 1.38114 * 120.04123 * 0.02562 * 22 20 19 24 24 C 1.50702 * 120.01897 * 180.02562 * 23 22 20 25 25 C 1.36116 * 110.14406 * 0.02562 * 16 15 14 26 26 C 1.35750 * 107.07542 * 0.26003 * 25 16 15 27 27 O 1.36080 * 127.26254 * 179.74177 * 26 25 16 28 28 H 1.09000 * 109.47380 * 300.00144 * 1 2 3 29 29 H 1.09000 * 109.46965 * 60.00056 * 1 2 3 30 30 H 1.08998 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47380 * 239.99856 * 2 1 3 32 32 H 1.09000 * 109.46965 * 119.99944 * 2 1 3 33 33 H 0.96999 * 119.99880 * 179.97438 * 7 6 4 34 34 H 1.07996 * 120.02106 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.97656 * 180.29821 * 19 18 17 36 36 H 1.08000 * 119.98241 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.47306 * 274.09786 * 24 23 22 38 38 H 1.08996 * 109.47270 * 34.10231 * 24 23 22 39 39 H 1.09000 * 109.46621 * 154.09468 * 24 23 22 40 40 H 1.07999 * 126.46623 * 180.02562 * 25 16 15 41 41 H 0.96701 * 114.00016 * 90.02074 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3893 1.9762 -1.1759 5 1 2.9659 2.8892 -1.1608 6 6 2.0239 1.4049 -2.3895 7 7 1.1382 0.4348 -2.4187 8 14 2.7920 2.0165 -3.9786 9 1 4.0228 1.2367 -4.2657 10 1 1.8260 1.8450 -5.0933 11 1 3.1379 3.4540 -3.8401 12 6 2.1023 2.0662 1.1577 13 8 2.4269 3.2385 1.1485 14 6 1.8009 1.3951 2.4345 15 7 1.5061 0.1185 2.5994 16 7 1.2987 -0.1320 3.8422 17 6 0.9647 -1.3895 4.3623 18 6 -0.0731 -2.1213 3.7997 19 6 -0.3966 -3.3629 4.3097 20 6 0.3051 -3.8735 5.3894 21 9 -0.0169 -5.0860 5.8908 22 6 1.3365 -3.1430 5.9553 23 6 1.6671 -1.9032 5.4442 24 6 2.7900 -1.1089 6.0600 25 6 1.4506 1.0013 4.5806 26 6 1.7656 2.0004 3.7171 27 8 2.0012 3.3062 4.0187 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8830 0.0364 -3.2654 34 1 -0.6232 -1.7217 2.9607 35 1 -1.2004 -3.9343 3.8695 36 1 1.8827 -3.5429 6.7967 37 1 2.4070 -0.5290 6.8996 38 1 3.5657 -1.7890 6.4119 39 1 3.2096 -0.4343 5.3137 40 1 1.3378 1.0900 5.6510 41 1 2.9279 3.5044 4.2112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081713118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:24 Heat of formation + Delta-G solvation = 0.411125 kcal Electronic energy + Delta-G solvation = -28896.117618 eV Core-core repulsion = 24693.532885 eV Total energy + Delta-G solvation = -4202.584733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.99296 -43.91529 -40.55017 -39.90222 -38.17534 -36.93313 -34.58809 -33.86848 -33.45056 -31.38036 -30.93584 -30.19856 -28.20567 -27.20143 -25.11243 -23.99073 -23.29190 -23.02365 -22.06638 -20.95173 -19.41631 -18.87171 -18.34852 -18.19099 -18.02917 -17.80356 -16.72351 -16.66636 -16.46370 -15.89291 -15.59034 -15.44450 -15.28067 -15.15028 -14.74382 -14.65891 -14.46476 -14.38881 -14.28301 -13.91951 -13.64645 -13.23740 -13.00491 -12.95606 -12.83148 -12.67245 -12.55853 -12.21112 -12.16006 -12.05398 -11.69758 -11.16582 -10.82039 -10.62325 -10.52800 -10.07898 -10.00790 -9.64410 -9.37977 -8.27166 -5.91512 -0.37998 0.03501 0.67189 0.97572 1.33615 1.42996 1.45346 1.55513 2.25892 2.28972 2.46754 2.93990 3.07075 3.16178 3.36939 3.55242 3.58302 3.75517 3.91028 3.98687 4.06314 4.23029 4.41015 4.49927 4.60097 4.66071 4.70996 4.73059 4.93710 4.96451 4.98600 4.99690 5.03539 5.15637 5.18502 5.27880 5.38530 5.52629 5.58269 5.85153 5.96543 6.12070 6.51158 6.83290 6.88500 7.14662 7.44303 8.02411 8.64956 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.003677 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.075129 B = 7613.921285 C = 9051.164643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.117 3.883 3 N -0.430 5.430 4 C -0.342 4.342 5 H 0.077 0.923 6 C -0.002 4.002 7 N -0.872 5.872 8 Si 0.997 3.003 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.277 1.277 12 C 0.492 3.508 13 O -0.626 6.626 14 C -0.025 4.025 15 N -0.255 5.255 16 N -0.235 5.235 17 C 0.093 3.907 18 C -0.072 4.072 19 C -0.142 4.142 20 C 0.111 3.889 21 F -0.135 7.135 22 C -0.133 4.133 23 C -0.038 4.038 24 C -0.126 4.126 25 C -0.009 4.009 26 C 0.018 3.982 27 O -0.467 6.467 28 H 0.011 0.989 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.274 0.726 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.228 0.772 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -12.318 19.008 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.006 4.006 3 N -0.146 5.146 4 C -0.470 4.470 5 H 0.095 0.905 6 C -0.204 4.204 7 N -0.511 5.511 8 Si 0.820 3.180 9 H -0.191 1.191 10 H -0.195 1.195 11 H -0.202 1.202 12 C 0.281 3.719 13 O -0.513 6.513 14 C -0.185 4.185 15 N -0.089 5.089 16 N -0.019 5.019 17 C 0.004 3.996 18 C -0.092 4.092 19 C -0.161 4.161 20 C 0.092 3.908 21 F -0.114 7.114 22 C -0.152 4.152 23 C -0.041 4.041 24 C -0.182 4.182 25 C -0.150 4.150 26 C -0.037 4.037 27 O -0.274 6.274 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.181 0.819 36 H 0.194 0.806 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.244 0.756 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.378 -12.913 18.217 22.372 hybrid contribution 0.594 1.088 -0.725 1.436 sum -0.784 -11.825 17.492 21.128 Atomic orbital electron populations 1.21707 0.96111 1.00189 0.99039 1.21866 0.95063 0.81806 1.01832 1.43952 1.52953 1.12560 1.05136 1.19813 1.33084 1.10334 0.83759 0.90501 1.26119 0.95736 0.96716 1.01852 1.70176 1.28230 1.24978 1.27691 0.84883 0.78253 0.78402 0.76447 1.19069 1.19475 1.20181 1.17214 0.85870 0.85790 0.82995 1.90562 1.56647 1.17104 1.86994 1.22671 1.08739 0.90959 0.96166 1.74077 1.19000 1.16118 0.99714 1.42560 1.48360 1.07138 1.03799 1.17646 0.99244 0.84153 0.98539 1.21012 0.94672 0.94174 0.99355 1.21173 1.02375 0.95768 0.96797 1.17868 0.96624 0.81661 0.94681 1.91533 1.91944 1.41466 1.86414 1.21114 0.97995 0.93452 1.02600 1.19830 0.96031 0.94592 0.93608 1.21085 0.95470 1.00274 1.01367 1.23281 1.07611 0.84119 1.00004 1.18311 1.09627 0.86219 0.89564 1.84821 1.33018 1.19453 1.90109 0.96944 0.92822 0.92178 0.89600 0.90235 0.91524 0.84808 0.81891 0.80619 0.87387 0.88270 0.92648 0.75594 0.74434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.22 9.29 71.98 0.67 -4.55 16 2 C 0.12 5.82 4.88 86.38 0.42 6.24 16 3 N -0.43 -24.36 2.64 -639.32 -1.69 -26.04 16 4 C -0.34 -20.30 9.42 84.09 0.79 -19.51 16 5 H 0.08 4.85 7.32 -2.91 -0.02 4.83 16 6 C 0.00 -0.09 5.15 84.95 0.44 0.35 16 7 N -0.87 -45.75 8.12 21.68 0.18 -45.57 16 8 Si 1.00 42.89 29.57 68.60 2.03 44.91 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.49 27.72 7.55 86.64 0.65 28.37 16 13 O -0.63 -39.00 16.18 -2.18 -0.04 -39.04 16 14 C -0.03 -1.13 6.52 42.41 0.28 -0.86 16 15 N -0.25 -9.92 7.50 -48.07 -0.36 -10.28 16 16 N -0.24 -6.96 3.00 -186.80 -0.56 -7.52 16 17 C 0.09 2.15 6.09 38.12 0.23 2.38 16 18 C -0.07 -1.59 9.85 22.39 0.22 -1.37 16 19 C -0.14 -2.41 10.02 22.30 0.22 -2.19 16 20 C 0.11 1.75 7.30 22.39 0.16 1.91 16 21 F -0.14 -2.21 17.27 44.97 0.78 -1.43 16 22 C -0.13 -1.73 9.69 22.30 0.22 -1.52 16 23 C -0.04 -0.62 5.87 -19.75 -0.12 -0.74 16 24 C -0.13 -1.50 8.64 71.24 0.62 -0.88 16 25 C -0.01 -0.24 9.07 83.45 0.76 0.51 16 26 C 0.02 0.68 7.35 22.59 0.17 0.85 16 27 O -0.47 -16.75 13.21 -92.48 -1.22 -17.98 16 28 H 0.01 0.55 7.31 -2.39 -0.02 0.53 16 29 H 0.05 2.79 6.36 -2.39 -0.02 2.77 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 4.52 5.77 -2.39 -0.01 4.50 16 32 H 0.08 3.71 5.12 -2.39 -0.01 3.70 16 33 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.11 0.76 7.95 -2.39 -0.02 0.74 16 38 H 0.10 0.80 8.11 -2.39 -0.02 0.78 16 39 H 0.05 0.95 6.34 -2.39 -0.02 0.94 16 40 H 0.23 3.72 7.51 -2.91 -0.02 3.69 16 41 H 0.40 10.62 9.07 -74.06 -0.67 9.95 16 Total: -1.00 -77.24 346.97 5.28 -71.96 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.43 Total: 21.98 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 5.73 Total: 9.00 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.43 Total: -89.42 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.26 Total: -57.01 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -77.24 5.28 -71.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081713118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.376 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds