Wall clock time and date at job start Tue Mar 31 2020 18:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.50693 * 109.47518 * 120.00202 * 2 1 3 5 5 O 1.21290 * 119.99990 * 120.00092 * 4 2 1 6 6 N 1.34776 * 120.00387 * 300.00104 * 4 2 1 7 7 C 1.38797 * 120.00399 * 179.97438 * 6 4 2 8 8 S 1.70097 * 124.59817 * 359.69699 * 7 6 4 9 9 C 1.76336 * 92.70998 * 179.97438 * 8 7 6 10 10 C 1.33071 * 110.72664 * 0.29992 * 9 8 7 11 11 C 1.36311 * 124.60001 * 180.02562 * 7 6 4 12 12 C 1.43198 * 123.33187 * 359.93678 * 11 7 6 13 13 N 5.76292 * 79.26912 * 74.41580 * 2 1 3 14 14 C 1.52613 * 110.20912 * 179.80516 * 10 9 8 15 15 C 1.54174 * 104.91895 * 342.52503 * 14 10 9 16 16 C 1.52387 * 138.82231 * 179.97438 * 9 8 7 17 17 N 1.46907 * 109.47031 * 240.00657 * 2 1 3 18 18 C 1.46899 * 110.99599 * 306.04436 * 17 2 1 19 19 C 1.46895 * 111.00018 * 69.99507 * 17 2 1 20 20 C 1.50706 * 109.47182 * 170.00113 * 19 17 2 21 21 H 1.08000 * 119.99302 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00436 * 179.72677 * 20 19 17 23 23 N 1.31515 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99418 * 24 22 20 26 26 H 1.48493 * 109.47010 * 209.99942 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99638 * 24 22 20 28 28 H 1.08999 * 109.47225 * 299.99419 * 1 2 3 29 29 H 1.08996 * 109.47361 * 59.99924 * 1 2 3 30 30 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99503 * 359.97438 * 6 4 2 32 32 H 1.08999 * 110.35336 * 101.38680 * 14 10 9 33 33 H 1.08995 * 110.34819 * 223.66605 * 14 10 9 34 34 H 1.09009 * 110.99732 * 268.35313 * 15 14 10 35 35 H 1.09005 * 111.03147 * 144.53979 * 15 14 10 36 36 H 1.08989 * 110.35933 * 316.59514 * 16 9 8 37 37 H 1.08998 * 110.35266 * 78.78745 * 16 9 8 38 38 H 1.08998 * 109.47218 * 183.95834 * 18 17 2 39 39 H 1.09004 * 109.47214 * 303.95234 * 18 17 2 40 40 H 1.08996 * 109.47566 * 63.95524 * 18 17 2 41 41 H 1.09001 * 109.47613 * 50.00459 * 19 17 2 42 42 H 1.08998 * 109.47678 * 290.00354 * 19 17 2 43 43 H 0.97004 * 120.00247 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1692 -0.9047 3.5877 8 16 3.1446 -2.2980 3.5679 9 6 3.2090 -2.3798 5.3282 10 6 2.5085 -1.3875 5.8717 11 6 1.8978 -0.5219 4.8676 12 6 1.0939 0.6170 5.1946 13 7 0.4569 1.5212 5.4540 14 6 2.5682 -1.4723 7.3943 15 6 3.0359 -2.9106 7.6936 16 6 3.8248 -3.2539 6.4140 17 7 2.0196 -0.6924 -1.1996 18 6 1.4342 -2.0353 -1.3080 19 6 1.7528 0.0974 -2.4091 20 6 2.4772 -0.5160 -3.5796 21 1 3.0756 -1.4040 -3.4390 22 6 2.3711 0.0528 -4.8310 23 7 1.6373 1.1305 -5.0033 24 14 3.2685 -0.7079 -6.2820 25 1 2.3907 -1.7112 -6.9362 26 1 3.6201 0.3541 -7.2585 27 1 4.5084 -1.3714 -5.8045 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1495 0.5388 2.5436 32 1 3.2855 -0.7512 7.7863 33 1 1.5813 -1.2978 7.8226 34 1 2.1847 -3.5800 7.8189 35 1 3.6831 -2.9371 8.5704 36 1 3.7045 -4.3082 6.1657 37 1 4.8802 -3.0130 6.5413 38 1 1.8663 -2.5520 -2.1650 39 1 1.6466 -2.5987 -0.3993 40 1 0.3555 -1.9520 -1.4400 41 1 2.1023 1.1191 -2.2604 42 1 0.6813 0.1055 -2.6087 43 1 1.5623 1.5305 -5.8838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:02 Heat of formation + Delta-G solvation = 41.398725 kcal Electronic energy + Delta-G solvation = -25543.633944 eV Core-core repulsion = 21909.039743 eV Total energy + Delta-G solvation = -3634.594201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.72217 -39.52423 -37.28420 -36.64876 -35.64707 -33.41117 -32.74418 -30.43411 -28.65030 -27.65761 -27.16866 -25.67684 -24.79848 -23.71463 -21.94624 -21.03509 -20.06238 -19.29763 -18.45758 -17.70195 -16.53269 -16.35793 -16.03872 -15.86562 -15.50813 -14.83537 -14.52667 -14.34428 -13.96430 -13.87415 -13.78008 -13.38426 -13.10228 -13.05046 -12.74649 -12.56454 -12.44142 -12.24343 -12.09754 -12.06247 -11.78417 -11.53264 -11.46167 -11.35856 -11.17764 -11.00610 -10.86432 -10.72720 -10.56481 -10.36688 -10.03241 -9.60783 -9.26972 -8.49893 -8.44901 -8.17135 -7.39065 -6.09241 -4.10257 0.55502 0.98394 1.71707 1.82919 2.44020 2.49987 2.60540 3.29339 3.32479 3.35824 3.40853 3.94002 4.14025 4.31101 4.37259 4.61054 4.68438 4.74612 4.75076 5.17370 5.20992 5.23620 5.26191 5.29037 5.37776 5.44942 5.50160 5.63529 5.66346 5.69699 5.84771 5.85520 6.01206 6.11256 6.15436 6.19448 6.34010 6.73506 6.83127 7.12324 7.20009 7.39003 7.68268 7.76384 7.95330 8.05613 8.41031 8.97204 9.54223 11.01664 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002578 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.470783 B =10860.591497 C =11771.047775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.111 0.889 4 C 0.516 3.484 5 O -0.473 6.473 6 N -0.637 5.637 7 C 0.072 3.928 8 S 0.351 5.649 9 C -0.281 4.281 10 C -0.068 4.068 11 C -0.118 4.118 12 C 0.278 3.722 13 N -0.432 5.432 14 C -0.059 4.059 15 C -0.118 4.118 16 C -0.037 4.037 17 N -0.516 5.516 18 C 0.029 3.971 19 C 0.194 3.806 20 C -0.507 4.507 21 H 0.065 0.935 22 C 0.056 3.944 23 N -0.899 5.899 24 Si 0.899 3.101 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.418 0.582 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.030 0.970 42 H -0.002 1.002 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -7.409 23.741 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.042 4.042 3 H 0.128 0.872 4 C 0.303 3.697 5 O -0.345 6.345 6 N -0.282 5.282 7 C -0.150 4.150 8 S 0.615 5.385 9 C -0.398 4.398 10 C -0.079 4.079 11 C -0.139 4.139 12 C -0.037 4.037 13 N -0.109 5.109 14 C -0.098 4.098 15 C -0.156 4.156 16 C -0.077 4.077 17 N -0.240 5.240 18 C -0.120 4.120 19 C 0.069 3.931 20 C -0.546 4.546 21 H 0.083 0.917 22 C -0.146 4.146 23 N -0.539 5.539 24 Si 0.727 3.273 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.016 0.984 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.704 -7.510 22.624 23.899 hybrid contribution -1.279 1.100 0.067 1.688 sum 0.424 -6.410 22.692 23.583 Atomic orbital electron populations 1.22473 0.95469 1.03235 1.03283 1.21605 0.93973 0.99058 0.89586 0.87151 1.21676 0.79477 0.84784 0.83725 1.90577 1.34947 1.24893 1.84040 1.43282 1.51033 1.30801 1.03107 1.21760 1.02628 1.01730 0.88839 1.84453 1.43071 1.16282 0.94644 1.26474 1.08003 1.04303 1.00980 1.20711 0.97717 0.93817 0.95669 1.15292 1.10408 0.98167 0.90034 1.24996 0.92544 0.92153 0.93998 1.81269 1.11353 1.11332 1.06987 1.21021 1.02169 0.97696 0.88964 1.22310 1.00223 0.95772 0.97342 1.20763 0.99063 0.98034 0.89808 1.62140 1.57130 1.03132 1.01589 1.22403 0.96042 0.91083 1.02426 1.19819 0.95336 0.93054 0.84862 1.21121 1.29382 1.12238 0.91815 0.91651 1.24975 0.95575 0.95057 0.98971 1.69947 1.39877 1.20718 1.23326 0.86471 0.80129 0.78765 0.81942 1.20714 1.21253 1.19676 0.92686 0.89911 0.91528 0.74391 0.89987 0.90822 0.90582 0.90059 0.90625 0.90069 0.90525 0.92072 0.96715 0.95149 0.98438 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.34 37.16 0.31 -2.26 16 2 C 0.07 1.13 2.73 -68.87 -0.19 0.94 16 3 H 0.11 1.67 7.93 -51.93 -0.41 1.26 16 4 C 0.52 7.55 6.81 -10.99 -0.07 7.47 16 5 O -0.47 -7.92 11.75 5.55 0.07 -7.86 16 6 N -0.64 -7.64 5.26 -11.85 -0.06 -7.70 16 7 C 0.07 0.86 6.94 -15.09 -0.10 0.76 16 8 S 0.35 3.93 19.96 -107.50 -2.15 1.78 16 9 C -0.28 -2.64 7.30 -35.27 -0.26 -2.89 16 10 C -0.07 -0.67 6.64 -102.38 -0.68 -1.35 16 11 C -0.12 -1.34 5.89 -105.58 -0.62 -1.96 16 12 C 0.28 3.46 14.92 -22.47 -0.34 3.12 16 13 N -0.43 -6.04 18.54 41.84 0.78 -5.26 16 14 C -0.06 -0.43 6.81 -26.32 -0.18 -0.61 16 15 C -0.12 -0.64 7.13 -25.49 -0.18 -0.82 16 16 C -0.04 -0.24 6.81 -26.42 -0.18 -0.42 16 17 N -0.52 -10.56 4.44 -237.74 -1.06 -11.62 16 18 C 0.03 0.55 8.31 60.06 0.50 1.05 16 19 C 0.19 4.74 4.29 -4.98 -0.02 4.71 16 20 C -0.51 -13.81 8.52 -34.44 -0.29 -14.11 16 21 H 0.07 1.79 7.10 -52.49 -0.37 1.42 16 22 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 23 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 24 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 29 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 30 H 0.07 0.93 6.41 -51.93 -0.33 0.59 16 31 H 0.42 4.30 7.53 -40.82 -0.31 3.99 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.43 8.14 -51.94 -0.42 0.01 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.59 6.86 -51.93 -0.36 1.23 16 39 H 0.06 1.09 5.82 -51.93 -0.30 0.79 16 40 H 0.01 0.27 6.46 -51.93 -0.34 -0.07 16 41 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 42 H 0.00 -0.05 7.06 -51.93 -0.37 -0.42 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -31.01 365.73 -9.22 -40.23 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.62 Total: -1.26 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.41 Total: -4.94 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.39 Total: -49.75 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.07 Total: -7.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.15 Total: 1.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.01 -9.22 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.632 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds