Wall clock time and date at job start Tue Mar 31 2020 18:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47229 * 2 1 4 4 C 1.50693 * 109.47518 * 120.00202 * 2 1 3 5 5 O 1.21290 * 119.99990 * 120.00092 * 4 2 1 6 6 N 1.34776 * 120.00387 * 300.00104 * 4 2 1 7 7 C 1.38797 * 120.00399 * 179.97438 * 6 4 2 8 8 S 1.70097 * 124.59817 * 359.69699 * 7 6 4 9 9 C 1.76336 * 92.70998 * 179.97438 * 8 7 6 10 10 C 1.33071 * 110.72664 * 0.29992 * 9 8 7 11 11 C 1.36311 * 124.60001 * 180.02562 * 7 6 4 12 12 C 1.43198 * 123.33187 * 359.93678 * 11 7 6 13 13 N 5.76292 * 79.26912 * 74.41580 * 2 1 3 14 14 C 1.52613 * 110.20912 * 179.80516 * 10 9 8 15 15 C 1.54174 * 104.91895 * 342.52503 * 14 10 9 16 16 C 1.52387 * 138.82231 * 179.97438 * 9 8 7 17 17 N 1.46907 * 109.47031 * 240.00657 * 2 1 3 18 18 C 1.46899 * 110.99599 * 306.04436 * 17 2 1 19 19 C 1.46895 * 111.00018 * 69.99507 * 17 2 1 20 20 C 1.50706 * 109.47182 * 170.00113 * 19 17 2 21 21 H 1.08000 * 119.99302 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00436 * 179.72677 * 20 19 17 23 23 N 1.31515 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99418 * 24 22 20 26 26 H 1.48493 * 109.47010 * 209.99942 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99638 * 24 22 20 28 28 H 1.08999 * 109.47225 * 299.99419 * 1 2 3 29 29 H 1.08996 * 109.47361 * 59.99924 * 1 2 3 30 30 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99503 * 359.97438 * 6 4 2 32 32 H 1.08999 * 110.35336 * 101.38680 * 14 10 9 33 33 H 1.08995 * 110.34819 * 223.66605 * 14 10 9 34 34 H 1.09009 * 110.99732 * 268.35313 * 15 14 10 35 35 H 1.09005 * 111.03147 * 144.53979 * 15 14 10 36 36 H 1.08989 * 110.35933 * 316.59514 * 16 9 8 37 37 H 1.08998 * 110.35266 * 78.78745 * 16 9 8 38 38 H 1.08998 * 109.47218 * 183.95834 * 18 17 2 39 39 H 1.09004 * 109.47214 * 303.95234 * 18 17 2 40 40 H 1.08996 * 109.47566 * 63.95524 * 18 17 2 41 41 H 1.09001 * 109.47613 * 50.00459 * 19 17 2 42 42 H 1.08998 * 109.47678 * 290.00354 * 19 17 2 43 43 H 0.97004 * 120.00247 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7069 -0.2501 2.4545 7 6 2.1692 -0.9047 3.5877 8 16 3.1446 -2.2980 3.5679 9 6 3.2090 -2.3798 5.3282 10 6 2.5085 -1.3875 5.8717 11 6 1.8978 -0.5219 4.8676 12 6 1.0939 0.6170 5.1946 13 7 0.4569 1.5212 5.4540 14 6 2.5682 -1.4723 7.3943 15 6 3.0359 -2.9106 7.6936 16 6 3.8248 -3.2539 6.4140 17 7 2.0196 -0.6924 -1.1996 18 6 1.4342 -2.0353 -1.3080 19 6 1.7528 0.0974 -2.4091 20 6 2.4772 -0.5160 -3.5796 21 1 3.0756 -1.4040 -3.4390 22 6 2.3711 0.0528 -4.8310 23 7 1.6373 1.1305 -5.0033 24 14 3.2685 -0.7079 -6.2820 25 1 2.3907 -1.7112 -6.9362 26 1 3.6201 0.3541 -7.2585 27 1 4.5084 -1.3714 -5.8045 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1495 0.5388 2.5436 32 1 3.2855 -0.7512 7.7863 33 1 1.5813 -1.2978 7.8226 34 1 2.1847 -3.5800 7.8189 35 1 3.6831 -2.9371 8.5704 36 1 3.7045 -4.3082 6.1657 37 1 4.8802 -3.0130 6.5413 38 1 1.8663 -2.5520 -2.1650 39 1 1.6466 -2.5987 -0.3993 40 1 0.3555 -1.9520 -1.4400 41 1 2.1023 1.1191 -2.2604 42 1 0.6813 0.1055 -2.6087 43 1 1.5623 1.5305 -5.8838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:00 Heat of formation + Delta-G solvation = 22.579929 kcal Electronic energy + Delta-G solvation = -25544.449988 eV Core-core repulsion = 21909.039743 eV Total energy + Delta-G solvation = -3635.410245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.86953 -40.31204 -38.56304 -37.77536 -36.71192 -34.87550 -34.19046 -31.86285 -29.28171 -29.06797 -28.37494 -27.12973 -26.03347 -24.99258 -23.24210 -21.76944 -21.40632 -20.16372 -19.39510 -18.88808 -18.42970 -17.39324 -17.04969 -16.73007 -16.55058 -16.38636 -15.95726 -15.68163 -15.44234 -14.99614 -14.64269 -14.61254 -14.30156 -14.20458 -13.83148 -13.59880 -13.56112 -13.29815 -13.20342 -12.96611 -12.89862 -12.86237 -12.74725 -12.58277 -12.48556 -12.30058 -12.14985 -12.05213 -11.94135 -11.77048 -11.36664 -11.14593 -10.71869 -10.60484 -9.32351 -9.06382 -9.00119 -8.20530 -6.28895 -0.38386 0.12708 0.91959 0.98736 1.30244 1.41789 1.42783 1.50590 1.54838 1.57014 2.36281 2.41157 2.99950 3.12641 3.22958 3.36748 3.51930 3.72449 3.93728 4.02158 4.15621 4.27505 4.36001 4.48178 4.55762 4.60178 4.68013 4.75145 4.81150 4.90641 4.96221 5.01112 5.01708 5.12730 5.22261 5.25001 5.26649 5.30983 5.40719 5.44287 5.63527 5.79137 6.03216 6.24450 6.40065 6.51190 6.68718 6.86194 7.40205 8.90015 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002578 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.470783 B =10860.591497 C =11771.047775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.116 0.884 4 C 0.525 3.475 5 O -0.497 6.497 6 N -0.626 5.626 7 C 0.056 3.944 8 S 0.331 5.669 9 C -0.268 4.268 10 C -0.082 4.082 11 C -0.114 4.114 12 C 0.293 3.707 13 N -0.460 5.460 14 C -0.061 4.061 15 C -0.109 4.109 16 C -0.040 4.040 17 N -0.531 5.531 18 C 0.037 3.963 19 C 0.211 3.789 20 C -0.524 4.524 21 H 0.059 0.941 22 C 0.005 3.995 23 N -0.931 5.931 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.426 0.574 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.010 0.990 42 H -0.020 1.020 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -8.569 25.748 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.046 4.046 3 H 0.133 0.867 4 C 0.312 3.688 5 O -0.371 6.371 6 N -0.271 5.271 7 C -0.165 4.165 8 S 0.596 5.404 9 C -0.385 4.385 10 C -0.093 4.093 11 C -0.136 4.136 12 C -0.022 4.022 13 N -0.138 5.138 14 C -0.100 4.100 15 C -0.148 4.148 16 C -0.080 4.080 17 N -0.255 5.255 18 C -0.111 4.111 19 C 0.085 3.915 20 C -0.562 4.562 21 H 0.077 0.923 22 C -0.193 4.193 23 N -0.571 5.571 24 Si 0.789 3.211 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.266 0.734 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.028 0.972 42 H -0.002 1.002 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.263 -8.671 24.672 26.249 hybrid contribution -1.439 1.451 -0.405 2.083 sum 0.824 -7.220 24.267 25.332 Atomic orbital electron populations 1.22373 0.93669 1.03492 1.04013 1.21649 0.95464 0.99016 0.88472 0.86678 1.21175 0.79251 0.84340 0.84012 1.90578 1.36047 1.25860 1.84635 1.42939 1.50814 1.30879 1.02484 1.21822 1.03662 1.02352 0.88658 1.84513 1.42993 1.16158 0.96720 1.26784 1.07286 1.04498 0.99929 1.21076 0.97663 0.93496 0.97101 1.15481 1.09924 0.97818 0.90364 1.25100 0.92018 0.91889 0.93161 1.81284 1.12296 1.12184 1.07999 1.21159 1.02678 0.99322 0.86868 1.22344 1.00627 0.94325 0.97500 1.20968 0.99764 0.98146 0.89091 1.61936 1.58382 1.03471 1.01676 1.22304 0.96127 0.90412 1.02219 1.19424 0.93628 0.92292 0.86121 1.21440 1.29461 1.12135 0.93156 0.92305 1.25805 0.96311 0.95470 1.01710 1.70054 1.41104 1.21917 1.24057 0.85454 0.79016 0.78062 0.78544 1.19852 1.20752 1.19266 0.89250 0.91817 0.91481 0.73443 0.89155 0.90690 0.90050 0.87746 0.89470 0.88766 0.92630 0.90551 0.96076 0.97223 1.00237 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 8.34 71.98 0.60 -4.20 16 2 C 0.07 2.11 2.73 44.16 0.12 2.24 16 3 H 0.12 3.52 7.93 -2.39 -0.02 3.50 16 4 C 0.52 15.10 6.81 87.65 0.60 15.70 16 5 O -0.50 -16.54 11.75 -3.06 -0.04 -16.57 16 6 N -0.63 -14.44 5.26 -309.79 -1.63 -16.07 16 7 C 0.06 1.28 6.94 83.14 0.58 1.86 16 8 S 0.33 7.09 19.96 -56.49 -1.13 5.97 16 9 C -0.27 -4.48 7.30 25.07 0.18 -4.30 16 10 C -0.08 -1.47 6.64 -18.40 -0.12 -1.59 16 11 C -0.11 -2.44 5.89 -20.48 -0.12 -2.57 16 12 C 0.29 6.95 14.92 88.33 1.32 8.27 16 13 N -0.46 -12.44 18.54 19.00 0.35 -12.09 16 14 C -0.06 -0.73 6.81 30.86 0.21 -0.52 16 15 C -0.11 -0.81 7.13 31.40 0.22 -0.58 16 16 C -0.04 -0.40 6.81 30.80 0.21 -0.19 16 17 N -0.53 -22.14 4.44 -906.06 -4.02 -26.16 16 18 C 0.04 1.45 8.31 127.69 1.06 2.51 16 19 C 0.21 10.65 4.29 85.56 0.37 11.02 16 20 C -0.52 -29.15 8.52 25.60 0.22 -28.93 16 21 H 0.06 3.28 7.10 -2.91 -0.02 3.26 16 22 C 0.01 0.30 5.46 84.65 0.46 0.76 16 23 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 24 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.09 1.79 7.56 -2.39 -0.02 1.77 16 29 H 0.06 2.00 6.91 -2.39 -0.02 1.98 16 30 H 0.07 1.82 6.41 -2.39 -0.02 1.80 16 31 H 0.43 8.26 7.53 -92.71 -0.70 7.56 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 2.35 6.86 -2.39 -0.02 2.34 16 39 H 0.08 2.72 5.82 -2.38 -0.01 2.71 16 40 H 0.02 0.77 6.46 -2.39 -0.02 0.76 16 41 H 0.01 0.52 7.93 -2.39 -0.02 0.50 16 42 H -0.02 -1.07 7.06 -2.39 -0.02 -1.08 16 43 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -67.25 365.73 2.12 -65.13 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.36 Total: 8.57 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 5.91 Total: -0.52 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -5.01 Total: -108.54 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.04 Total: -16.57 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.13 Total: 5.97 kcal Total: -67.25 2.12 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.707 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds