Wall clock time and date at job start Tue Mar 31 2020 18:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46564 * 2 1 4 4 N 1.46501 * 109.46779 * 119.99579 * 2 1 3 5 5 C 1.34776 * 120.00416 * 274.99845 * 4 2 1 6 6 S 1.71200 * 119.99925 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.40099 * 119.99841 * 0.02562 * 7 5 4 9 9 C 1.34778 * 119.99469 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00296 * 0.02562 * 9 8 7 11 11 C 1.47640 * 119.99665 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.89640 * 359.73259 * 11 9 8 13 13 C 1.36324 * 120.10737 * 179.75649 * 12 11 9 14 14 C 1.40883 * 119.88846 * 0.53590 * 13 12 11 15 15 C 1.41111 * 120.10372 * 179.69391 * 14 13 12 16 16 H 1.08001 * 120.00499 * 204.65832 * 15 14 13 17 17 C 1.40230 * 119.99581 * 24.65874 * 15 14 13 18 18 N 1.30638 * 120.00150 * 17.86927 * 17 15 14 19 19 Si 1.86799 * 119.99795 * 197.86879 * 17 15 14 20 20 H 1.48503 * 109.47212 * 89.99893 * 19 17 15 21 21 H 1.48496 * 109.47326 * 210.00132 * 19 17 15 22 22 H 1.48502 * 109.47243 * 330.00116 * 19 17 15 23 23 C 1.40884 * 119.79631 * 359.71645 * 14 13 12 24 24 C 1.36314 * 119.89123 * 0.02562 * 23 14 13 25 25 C 1.52999 * 109.47097 * 240.00104 * 2 1 3 26 26 C 1.52996 * 117.50138 * 59.99637 * 25 2 1 27 27 C 1.53004 * 60.02872 * 107.47952 * 26 25 2 28 28 H 1.09002 * 109.46564 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47043 * 300.00191 * 1 2 3 30 30 H 1.08992 * 109.46923 * 60.00283 * 1 2 3 31 31 H 0.97002 * 119.99949 * 95.00615 * 4 2 1 32 32 H 0.97000 * 119.99638 * 179.97438 * 7 5 4 33 33 H 0.96992 * 120.00347 * 0.02562 * 8 7 5 34 34 H 1.07997 * 119.94989 * 359.97438 * 12 11 9 35 35 H 1.07998 * 120.05220 * 180.25300 * 13 12 11 36 36 H 0.97004 * 119.99951 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.05575 * 179.97438 * 23 14 13 38 38 H 1.08002 * 119.94729 * 180.02562 * 24 23 14 39 39 H 1.09003 * 115.55544 * 274.30604 * 25 2 1 40 40 H 1.08994 * 117.50091 * 214.97812 * 26 25 2 41 41 H 1.08997 * 117.49718 * 359.97438 * 26 25 2 42 42 H 1.08995 * 117.49784 * 107.50739 * 27 26 25 43 43 H 1.09008 * 117.49540 * 252.52241 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0182 2.3572 6 16 1.7394 1.6428 2.4342 7 7 2.5968 -0.6534 3.4576 8 7 2.9309 -2.0125 3.3944 9 6 3.3810 -2.6475 4.4947 10 8 3.4967 -2.0411 5.5421 11 6 3.7326 -4.0799 4.4283 12 6 3.5922 -4.7778 3.2226 13 6 3.9203 -6.0993 3.1552 14 6 4.3905 -6.7654 4.3041 15 6 4.7253 -8.1347 4.2411 16 1 4.6980 -8.7392 5.1357 17 6 5.0934 -8.7108 3.0167 18 7 5.4654 -7.9496 2.0223 19 14 5.0519 -10.5666 2.8077 20 1 3.7129 -10.9796 2.3159 21 1 6.0880 -10.9776 1.8265 22 1 5.3218 -11.2181 4.1146 23 6 4.5251 -6.0602 5.5163 24 6 4.1995 -4.7377 5.5727 25 6 2.0401 -0.7212 -1.2492 26 6 1.6358 -0.1496 -2.6096 27 6 3.0743 0.0058 -2.1122 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6317 1.1527 32 1 2.6897 -0.1694 4.2930 33 1 2.8389 -2.4962 2.5587 34 1 3.2268 -4.2676 2.3437 35 1 3.8155 -6.6357 2.2238 36 1 5.7197 -8.3481 1.1752 37 1 4.8848 -6.5668 6.3997 38 1 4.3027 -4.1962 6.5014 39 1 2.1272 -1.8044 -1.1642 40 1 1.4569 -0.8566 -3.4196 41 1 1.0061 0.7401 -2.6146 42 1 3.8419 -0.5990 -2.5951 43 1 3.3910 0.9977 -1.7896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089421398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:07 Heat of formation + Delta-G solvation = 52.886850 kcal Electronic energy + Delta-G solvation = -25165.535335 eV Core-core repulsion = 21531.439297 eV Total energy + Delta-G solvation = -3634.096039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36261 -39.13486 -37.86935 -37.10634 -35.09688 -34.17043 -32.31209 -30.52275 -29.79315 -29.68991 -26.32018 -24.99841 -23.47555 -22.61013 -22.17196 -21.53111 -21.21486 -20.38013 -19.02450 -18.21378 -17.78321 -16.81993 -16.25622 -15.90372 -15.61693 -15.34136 -14.68820 -14.62264 -14.35997 -14.31027 -14.25962 -13.52511 -13.31667 -13.05504 -12.65533 -12.41382 -12.33252 -12.22460 -11.73664 -11.67094 -11.48844 -11.36871 -11.20827 -11.16907 -10.97718 -10.88182 -10.74319 -10.31852 -10.28850 -9.83788 -9.64559 -9.54679 -8.77929 -8.02841 -7.88317 -7.69874 -7.63322 -7.29177 -4.86711 1.23849 1.37598 1.88750 2.18864 2.52692 2.74487 2.77441 2.81421 2.84076 3.44171 3.46949 3.56152 4.18871 4.26677 4.35927 4.54486 4.62879 4.80818 5.09127 5.13454 5.26383 5.28568 5.31791 5.41189 5.57526 5.63114 5.66172 5.74117 5.80256 6.02376 6.04813 6.09369 6.24411 6.51410 6.54656 6.62927 6.74826 6.84777 7.13388 7.18246 7.28284 7.42006 7.59306 7.64895 7.80089 8.12575 8.36327 8.46543 8.51359 9.62031 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002805 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.846487 B = 9980.060653 C =11938.837373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 H 0.118 0.882 4 N -0.680 5.680 5 C 0.568 3.432 6 S -0.631 6.631 7 N -0.460 5.460 8 N -0.560 5.560 9 C 0.578 3.422 10 O -0.558 6.558 11 C -0.287 4.287 12 C -0.063 4.063 13 C -0.174 4.174 14 C 0.129 3.871 15 C -0.430 4.430 16 H 0.089 0.911 17 C 0.073 3.927 18 N -0.763 5.763 19 Si 0.917 3.083 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.236 4.236 24 C -0.012 4.012 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.174 4.174 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.457 0.543 33 H 0.417 0.583 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.290 0.710 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 5.080 -10.294 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.135 0.865 4 N -0.313 5.313 5 C 0.204 3.796 6 S -0.507 6.507 7 N -0.186 5.186 8 N -0.313 5.313 9 C 0.375 3.625 10 O -0.437 6.437 11 C -0.293 4.293 12 C -0.082 4.082 13 C -0.193 4.193 14 C 0.126 3.874 15 C -0.457 4.457 16 H 0.107 0.893 17 C -0.150 4.150 18 N -0.386 5.386 19 Si 0.740 3.260 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.256 4.256 24 C -0.032 4.032 25 C -0.193 4.193 26 C -0.200 4.200 27 C -0.211 4.211 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.231 0.769 32 H 0.307 0.693 33 H 0.259 0.741 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.321 6.415 -9.845 12.899 hybrid contribution 0.445 -2.259 -0.421 2.341 sum -4.876 4.156 -10.266 12.101 Atomic orbital electron populations 1.22151 0.93735 1.02329 1.03796 1.20977 0.94905 0.97692 0.79373 0.86466 1.45021 1.64924 1.12998 1.08327 1.22338 0.82020 0.94173 0.81052 1.93523 1.72351 0.92860 1.91974 1.44691 1.61217 1.00298 1.12391 1.45777 1.71340 0.98449 1.15704 1.18971 0.74895 0.87667 0.80987 1.90712 1.55703 1.68015 1.29247 1.18470 1.24252 0.89664 0.96914 1.20361 0.98620 0.95276 0.93981 1.20971 1.04616 0.93733 0.99987 1.17820 0.85764 0.92760 0.91071 1.19986 1.36094 0.94542 0.95070 0.89273 1.26172 0.91965 1.01864 0.95013 1.69720 1.26405 1.38776 1.03666 0.86138 0.79346 0.80736 0.79774 1.18737 1.19812 1.18070 1.20731 1.12062 0.93969 0.98814 1.20330 0.93159 0.94078 0.95596 1.22483 1.05600 0.99533 0.91639 1.22940 0.98275 1.03218 0.95593 1.23113 0.92605 1.02254 1.03166 0.92629 0.90555 0.90958 0.76899 0.69346 0.74071 0.89859 0.85956 0.89871 0.87926 0.87721 0.87345 0.88356 0.88174 0.88497 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.27 37.16 0.34 -1.10 16 2 C 0.17 1.63 2.57 -67.93 -0.17 1.46 16 3 H 0.12 1.30 6.57 -51.93 -0.34 0.96 16 4 N -0.68 -7.11 5.04 -55.52 -0.28 -7.39 16 5 C 0.57 7.64 7.94 -86.92 -0.69 6.95 16 6 S -0.63 -10.28 28.14 -107.50 -3.02 -13.31 16 7 N -0.46 -6.55 6.26 29.96 0.19 -6.36 16 8 N -0.56 -8.21 6.21 30.48 0.19 -8.02 16 9 C 0.58 10.83 7.88 -12.42 -0.10 10.74 16 10 O -0.56 -11.89 16.16 5.29 0.09 -11.80 16 11 C -0.29 -5.76 5.89 -104.73 -0.62 -6.38 16 12 C -0.06 -1.21 9.47 -39.61 -0.38 -1.58 16 13 C -0.17 -3.78 8.64 -39.27 -0.34 -4.12 16 14 C 0.13 2.97 5.57 -106.81 -0.60 2.38 16 15 C -0.43 -9.71 9.04 -37.74 -0.34 -10.05 16 16 H 0.09 1.92 7.91 -52.49 -0.42 1.51 16 17 C 0.07 1.53 5.14 -17.31 -0.09 1.45 16 18 N -0.76 -16.56 10.95 55.56 0.61 -15.95 16 19 Si 0.92 15.72 29.60 -169.99 -5.03 10.69 16 20 H -0.26 -4.47 7.11 56.52 0.40 -4.07 16 21 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 22 H -0.26 -4.41 7.11 56.52 0.40 -4.00 16 23 C -0.24 -5.16 9.73 -39.27 -0.38 -5.54 16 24 C -0.01 -0.26 9.52 -39.61 -0.38 -0.63 16 25 C -0.17 -1.32 5.35 -90.59 -0.48 -1.81 16 26 C -0.16 -1.05 9.73 -26.73 -0.26 -1.31 16 27 C -0.17 -1.29 10.18 -26.69 -0.27 -1.56 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 30 H 0.07 0.54 7.29 -51.93 -0.38 0.16 16 31 H 0.39 3.53 6.47 -40.82 -0.26 3.26 16 32 H 0.46 6.94 7.98 -182.60 -1.46 5.48 16 33 H 0.42 5.07 4.70 -182.61 -0.86 4.22 16 34 H 0.08 1.27 6.37 -52.49 -0.33 0.93 16 35 H 0.12 2.69 6.16 -52.49 -0.32 2.37 16 36 H 0.29 5.63 8.29 -40.82 -0.34 5.29 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.10 2.14 7.63 -52.49 -0.40 1.74 16 39 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.60 7.61 -51.93 -0.39 0.21 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.77 8.05 -51.92 -0.42 0.36 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -26.94 372.67 -13.62 -40.56 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -7.22 Total: 17.10 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.75 Total: -11.13 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.71 Total: -37.72 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 15.72 SS G_CDS: -5.03 Total: 10.69 kcal Atomic # 16 Polarization: -10.28 SS G_CDS: -3.02 Total: -13.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.94 -13.62 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089421398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.444 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds