Wall clock time and date at job start Tue Mar 31 2020 18:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46564 * 2 1 4 4 N 1.46501 * 109.46779 * 119.99579 * 2 1 3 5 5 C 1.34776 * 120.00416 * 274.99845 * 4 2 1 6 6 S 1.71200 * 119.99925 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.40099 * 119.99841 * 0.02562 * 7 5 4 9 9 C 1.34778 * 119.99469 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00296 * 0.02562 * 9 8 7 11 11 C 1.47640 * 119.99665 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.89640 * 359.73259 * 11 9 8 13 13 C 1.36324 * 120.10737 * 179.75649 * 12 11 9 14 14 C 1.40883 * 119.88846 * 0.53590 * 13 12 11 15 15 C 1.41111 * 120.10372 * 179.69391 * 14 13 12 16 16 H 1.08001 * 120.00499 * 204.65832 * 15 14 13 17 17 C 1.40230 * 119.99581 * 24.65874 * 15 14 13 18 18 N 1.30638 * 120.00150 * 17.86927 * 17 15 14 19 19 Si 1.86799 * 119.99795 * 197.86879 * 17 15 14 20 20 H 1.48503 * 109.47212 * 89.99893 * 19 17 15 21 21 H 1.48496 * 109.47326 * 210.00132 * 19 17 15 22 22 H 1.48502 * 109.47243 * 330.00116 * 19 17 15 23 23 C 1.40884 * 119.79631 * 359.71645 * 14 13 12 24 24 C 1.36314 * 119.89123 * 0.02562 * 23 14 13 25 25 C 1.52999 * 109.47097 * 240.00104 * 2 1 3 26 26 C 1.52996 * 117.50138 * 59.99637 * 25 2 1 27 27 C 1.53004 * 60.02872 * 107.47952 * 26 25 2 28 28 H 1.09002 * 109.46564 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47043 * 300.00191 * 1 2 3 30 30 H 1.08992 * 109.46923 * 60.00283 * 1 2 3 31 31 H 0.97002 * 119.99949 * 95.00615 * 4 2 1 32 32 H 0.97000 * 119.99638 * 179.97438 * 7 5 4 33 33 H 0.96992 * 120.00347 * 0.02562 * 8 7 5 34 34 H 1.07997 * 119.94989 * 359.97438 * 12 11 9 35 35 H 1.07998 * 120.05220 * 180.25300 * 13 12 11 36 36 H 0.97004 * 119.99951 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.05575 * 179.97438 * 23 14 13 38 38 H 1.08002 * 119.94729 * 180.02562 * 24 23 14 39 39 H 1.09003 * 115.55544 * 274.30604 * 25 2 1 40 40 H 1.08994 * 117.50091 * 214.97812 * 26 25 2 41 41 H 1.08997 * 117.49718 * 359.97438 * 26 25 2 42 42 H 1.08995 * 117.49784 * 107.50739 * 27 26 25 43 43 H 1.09008 * 117.49540 * 252.52241 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0182 2.3572 6 16 1.7394 1.6428 2.4342 7 7 2.5968 -0.6534 3.4576 8 7 2.9309 -2.0125 3.3944 9 6 3.3810 -2.6475 4.4947 10 8 3.4967 -2.0411 5.5421 11 6 3.7326 -4.0799 4.4283 12 6 3.5922 -4.7778 3.2226 13 6 3.9203 -6.0993 3.1552 14 6 4.3905 -6.7654 4.3041 15 6 4.7253 -8.1347 4.2411 16 1 4.6980 -8.7392 5.1357 17 6 5.0934 -8.7108 3.0167 18 7 5.4654 -7.9496 2.0223 19 14 5.0519 -10.5666 2.8077 20 1 3.7129 -10.9796 2.3159 21 1 6.0880 -10.9776 1.8265 22 1 5.3218 -11.2181 4.1146 23 6 4.5251 -6.0602 5.5163 24 6 4.1995 -4.7377 5.5727 25 6 2.0401 -0.7212 -1.2492 26 6 1.6358 -0.1496 -2.6096 27 6 3.0743 0.0058 -2.1122 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6317 1.1527 32 1 2.6897 -0.1694 4.2930 33 1 2.8389 -2.4962 2.5587 34 1 3.2268 -4.2676 2.3437 35 1 3.8155 -6.6357 2.2238 36 1 5.7197 -8.3481 1.1752 37 1 4.8848 -6.5668 6.3997 38 1 4.3027 -4.1962 6.5014 39 1 2.1272 -1.8044 -1.1642 40 1 1.4569 -0.8566 -3.4196 41 1 1.0061 0.7401 -2.6146 42 1 3.8419 -0.5990 -2.5951 43 1 3.3910 0.9977 -1.7896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089421398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:06 Heat of formation + Delta-G solvation = 40.205529 kcal Electronic energy + Delta-G solvation = -25166.085239 eV Core-core repulsion = 21531.439297 eV Total energy + Delta-G solvation = -3634.645942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65375 -40.26432 -39.17431 -38.35025 -36.12661 -35.76957 -33.61881 -31.85556 -31.37295 -30.82786 -27.88627 -25.90311 -24.72162 -23.48807 -23.15657 -22.88377 -22.54042 -21.55458 -20.13007 -19.45533 -19.41226 -17.98857 -17.52670 -17.07095 -16.98980 -16.59127 -15.99563 -15.79370 -15.48830 -15.30180 -15.26795 -15.13750 -14.58943 -14.23790 -13.99777 -13.79459 -13.47578 -13.29569 -13.01302 -12.90535 -12.70464 -12.57575 -12.44273 -12.28896 -12.01217 -11.85702 -11.83229 -11.44142 -11.34357 -11.22230 -11.11261 -10.99890 -9.93551 -9.64957 -9.50908 -9.01283 -8.92102 -8.85777 -6.54558 0.04653 0.11028 0.35642 1.01223 1.11241 1.37280 1.41918 1.52236 1.52973 1.93642 2.14586 2.67529 2.85061 3.15774 3.52536 3.61914 3.86071 3.94111 4.07412 4.14960 4.18650 4.35250 4.38587 4.42805 4.63489 4.79492 4.82559 4.88173 4.91229 4.97817 5.03848 5.07251 5.09958 5.21342 5.28255 5.33339 5.35855 5.49396 5.58410 5.76620 5.86669 5.93442 5.98443 6.16617 6.21708 6.47828 6.71197 6.81289 7.05775 8.08359 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002805 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.846487 B = 9980.060653 C =11938.837373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 H 0.101 0.899 4 N -0.661 5.661 5 C 0.583 3.417 6 S -0.680 6.680 7 N -0.462 5.462 8 N -0.540 5.540 9 C 0.584 3.416 10 O -0.585 6.585 11 C -0.290 4.290 12 C -0.051 4.051 13 C -0.194 4.194 14 C 0.104 3.896 15 C -0.463 4.463 16 H 0.087 0.913 17 C 0.041 3.959 18 N -0.788 5.788 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.259 1.259 23 C -0.251 4.251 24 C -0.023 4.023 25 C -0.177 4.177 26 C -0.150 4.150 27 C -0.183 4.183 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.405 0.595 32 H 0.454 0.546 33 H 0.430 0.570 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.299 0.701 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 4.348 -12.456 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.070 3.930 3 H 0.119 0.881 4 N -0.292 5.292 5 C 0.218 3.782 6 S -0.557 6.557 7 N -0.188 5.188 8 N -0.292 5.292 9 C 0.380 3.620 10 O -0.465 6.465 11 C -0.297 4.297 12 C -0.070 4.070 13 C -0.213 4.213 14 C 0.100 3.900 15 C -0.489 4.489 16 H 0.105 0.895 17 C -0.180 4.180 18 N -0.411 5.411 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.271 4.271 24 C -0.043 4.043 25 C -0.196 4.196 26 C -0.188 4.188 27 C -0.220 4.220 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.245 0.755 32 H 0.303 0.697 33 H 0.276 0.724 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.925 5.685 -12.076 14.603 hybrid contribution 0.610 -1.913 0.204 2.018 sum -5.316 3.773 -11.872 13.543 Atomic orbital electron populations 1.22101 0.93090 1.02806 1.03488 1.21068 0.95312 0.97068 0.79514 0.88123 1.45132 1.62972 1.13447 1.07632 1.21970 0.81545 0.93187 0.81513 1.93660 1.74207 0.95322 1.92483 1.44624 1.61852 0.99757 1.12581 1.45303 1.69975 0.98701 1.15237 1.18657 0.74833 0.87212 0.81346 1.90707 1.56817 1.68436 1.30580 1.18665 1.23550 0.90548 0.96915 1.20672 0.96862 0.94455 0.95042 1.21019 1.05895 0.94854 0.99523 1.18159 0.86420 0.93473 0.91900 1.20215 1.37747 0.94890 0.96064 0.89487 1.26880 0.91027 1.05878 0.94201 1.69725 1.26534 1.40578 1.04270 0.85131 0.79503 0.75330 0.79539 1.18243 1.18998 1.18284 1.20860 1.12794 0.94452 0.98985 1.20476 0.93427 0.93997 0.96369 1.22441 1.06170 0.99830 0.91114 1.23037 0.97381 1.03424 0.94944 1.23149 0.93364 1.01961 1.03486 0.91672 0.92891 0.89295 0.75530 0.69746 0.72416 0.85551 0.86420 0.88915 0.87604 0.87555 0.86272 0.87018 0.87724 0.87971 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.27 71.99 0.67 -1.81 16 2 C 0.17 2.90 2.57 44.99 0.12 3.02 16 3 H 0.10 2.12 6.57 -2.39 -0.02 2.10 16 4 N -0.66 -12.28 5.04 -329.55 -1.66 -13.95 16 5 C 0.58 14.85 7.94 179.05 1.42 16.27 16 6 S -0.68 -21.97 28.14 -56.49 -1.59 -23.55 16 7 N -0.46 -12.44 6.26 -59.12 -0.37 -12.81 16 8 N -0.54 -14.57 6.21 -175.73 -1.09 -15.66 16 9 C 0.58 21.00 7.88 86.73 0.68 21.68 16 10 O -0.58 -24.46 16.16 -4.00 -0.06 -24.53 16 11 C -0.29 -11.35 5.89 -19.93 -0.12 -11.47 16 12 C -0.05 -1.87 9.47 22.25 0.21 -1.66 16 13 C -0.19 -8.33 8.64 22.47 0.19 -8.14 16 14 C 0.10 4.84 5.57 -21.28 -0.12 4.72 16 15 C -0.46 -21.20 9.04 23.46 0.21 -20.99 16 16 H 0.09 3.85 7.91 -2.91 -0.02 3.83 16 17 C 0.04 1.70 5.14 85.35 0.44 2.14 16 18 N -0.79 -33.83 10.95 21.87 0.24 -33.59 16 19 Si 0.98 31.54 29.60 68.60 2.03 33.57 16 20 H -0.26 -8.02 7.11 99.48 0.71 -7.31 16 21 H -0.27 -8.10 7.11 99.48 0.71 -7.40 16 22 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 23 C -0.25 -11.21 9.73 22.47 0.22 -10.99 16 24 C -0.02 -0.99 9.52 22.25 0.21 -0.78 16 25 C -0.18 -2.20 5.35 -10.77 -0.06 -2.26 16 26 C -0.15 -1.52 9.73 30.59 0.30 -1.22 16 27 C -0.18 -2.32 10.18 30.62 0.31 -2.01 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.12 7.48 -2.39 -0.02 1.10 16 30 H 0.09 1.11 7.29 -2.39 -0.02 1.10 16 31 H 0.41 5.90 6.47 -92.71 -0.60 5.30 16 32 H 0.45 13.38 7.98 -213.32 -1.70 11.68 16 33 H 0.43 9.02 4.70 -213.33 -1.00 8.01 16 34 H 0.13 3.38 6.37 -2.91 -0.02 3.36 16 35 H 0.12 5.12 6.16 -2.91 -0.02 5.11 16 36 H 0.30 11.35 8.29 -92.71 -0.77 10.58 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.11 4.39 7.63 -2.91 -0.02 4.37 16 39 H 0.12 1.28 8.07 -2.39 -0.02 1.26 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.10 0.98 7.61 -2.39 -0.02 0.96 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.31 8.05 -2.38 -0.02 1.30 16 Total: -1.00 -58.84 372.67 -0.04 -58.88 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -2.22 Total: 45.12 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.69 Total: -13.49 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.88 Total: -76.00 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 31.54 SS G_CDS: 2.03 Total: 33.57 kcal Atomic # 16 Polarization: -21.97 SS G_CDS: -1.59 Total: -23.55 kcal Total: -58.84 -0.04 -58.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089421398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.087 kcal (2) G-P(sol) polarization free energy of solvation -58.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds