Wall clock time and date at job start Tue Mar 31 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47033 * 2 1 4 4 C 1.52996 * 109.47158 * 120.00246 * 2 1 3 5 5 C 1.47193 * 109.47577 * 185.00321 * 4 2 1 6 6 N 3.43547 * 154.82374 * 111.57040 * 2 1 3 7 7 S 1.81404 * 109.47216 * 239.99907 * 2 1 3 8 8 C 1.76201 * 103.00088 * 71.19349 * 7 2 1 9 9 C 1.38794 * 120.10297 * 4.26240 * 8 7 2 10 10 C 1.38197 * 119.98430 * 180.27207 * 9 8 7 11 11 C 1.38289 * 120.20212 * 359.73089 * 10 9 8 12 12 C 1.38252 * 120.21431 * 359.97438 * 11 10 9 13 13 C 1.38653 * 120.00499 * 359.97438 * 12 11 10 14 14 N 1.40137 * 120.10042 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99967 * 27.67678 * 14 13 12 16 16 O 1.21303 * 120.00222 * 355.86786 * 15 14 13 17 17 C 1.50702 * 120.00267 * 175.58812 * 15 14 13 18 18 N 1.46502 * 109.47125 * 180.27188 * 17 15 14 19 19 C 1.46507 * 119.99295 * 90.00539 * 18 17 15 20 20 C 1.36932 * 120.00392 * 269.99977 * 18 17 15 21 21 H 1.08005 * 119.99808 * 143.20663 * 20 18 17 22 22 C 1.38804 * 120.00052 * 323.21121 * 20 18 17 23 23 N 1.31626 * 119.99957 * 158.67794 * 22 20 18 24 24 Si 1.86798 * 120.00189 * 338.67870 * 22 20 18 25 25 H 1.48495 * 109.47046 * 95.69112 * 24 22 20 26 26 H 1.48500 * 109.47088 * 215.69009 * 24 22 20 27 27 H 1.48494 * 109.46969 * 335.69006 * 24 22 20 28 28 H 1.08998 * 109.47493 * 185.67605 * 1 2 3 29 29 H 1.09002 * 109.47457 * 305.68025 * 1 2 3 30 30 H 1.09004 * 109.47154 * 65.68007 * 1 2 3 31 31 H 1.09002 * 109.46768 * 305.00215 * 4 2 1 32 32 H 1.09000 * 109.47272 * 64.99715 * 4 2 1 33 33 H 1.08004 * 120.00307 * 359.97438 * 9 8 7 34 34 H 1.08004 * 119.89472 * 179.69996 * 10 9 8 35 35 H 1.08006 * 119.89582 * 180.02562 * 11 10 9 36 36 H 1.07992 * 119.99821 * 179.97438 * 12 11 10 37 37 H 0.96998 * 120.00362 * 207.67518 * 14 13 12 38 38 H 1.08997 * 109.47364 * 300.28044 * 17 15 14 39 39 H 1.09005 * 109.46521 * 60.28068 * 17 15 14 40 40 H 1.08998 * 109.47183 * 95.04120 * 19 18 17 41 41 H 1.09001 * 109.46492 * 215.03595 * 19 18 17 42 42 H 1.08993 * 109.47442 * 335.04096 * 19 18 17 43 43 H 0.96997 * 119.99862 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5069 -0.6174 1.3113 6 7 4.6390 -0.5373 1.3591 7 16 2.1346 -0.8552 -1.4811 8 6 1.7450 0.2732 -2.7772 9 6 1.1999 1.5143 -2.4792 10 6 0.8899 2.3952 -3.4979 11 6 1.1264 2.0464 -4.8151 12 6 1.6747 0.8147 -5.1210 13 6 1.9900 -0.0754 -4.1057 14 7 2.5463 -1.3242 -4.4134 15 6 3.2774 -1.4783 -5.5351 16 8 3.3915 -0.5571 -6.3160 17 6 3.9582 -2.7930 -5.8163 18 7 4.6890 -2.7035 -7.0829 19 6 6.0848 -2.2584 -7.0932 20 6 4.0676 -3.0359 -8.2569 21 1 4.2806 -2.4786 -9.1573 22 6 3.1638 -4.0889 -8.2899 23 7 2.2695 -4.1587 -9.2531 24 14 3.2168 -5.4070 -6.9673 25 1 2.2331 -5.0808 -5.9038 26 1 2.8797 -6.7232 -7.5665 27 1 4.5796 -5.4647 -6.3803 28 1 -0.3634 -1.0226 0.1016 29 1 -0.3634 0.5994 0.8347 30 1 -0.3634 0.4232 -0.9365 31 1 1.6052 -0.2618 2.1369 32 1 1.7515 -1.7715 1.2055 33 1 1.0135 1.7897 -1.4516 34 1 0.4613 3.3587 -3.2647 35 1 0.8827 2.7388 -5.6074 36 1 1.8575 0.5458 -6.1508 37 1 2.4054 -2.0778 -3.8192 38 1 4.6552 -3.0210 -5.0099 39 1 3.2097 -3.5826 -5.8837 40 1 6.7432 -3.1268 -7.0753 41 1 6.2741 -1.6775 -7.9959 42 1 6.2754 -1.6397 -6.2164 43 1 1.6382 -4.8948 -9.2764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108362457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:51 Heat of formation + Delta-G solvation = 56.247228 kcal Electronic energy + Delta-G solvation = -25795.734253 eV Core-core repulsion = 22161.783931 eV Total energy + Delta-G solvation = -3633.950322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.14998 -38.23151 -37.46541 -35.54111 -35.06368 -34.24858 -31.66312 -31.12125 -29.91959 -28.69754 -27.54505 -25.98824 -23.43132 -22.98527 -22.37748 -21.26438 -20.06978 -18.54933 -17.80170 -17.25181 -17.02064 -16.57485 -16.31067 -15.53836 -15.09327 -14.80568 -14.73991 -14.23729 -14.08175 -13.85271 -13.75715 -13.59297 -13.33354 -13.08979 -12.89728 -12.79323 -12.58410 -12.47281 -12.30319 -12.13608 -11.97008 -11.82462 -11.73794 -11.42244 -11.11533 -10.85322 -10.57624 -10.35788 -10.22982 -10.16376 -9.71486 -9.67421 -9.14518 -8.59403 -8.19978 -7.36580 -6.94420 -6.04932 -3.46727 1.15864 1.21557 1.42205 2.11271 2.40668 2.49777 3.14259 3.18950 3.36796 3.39338 3.43581 3.49882 3.84789 4.12050 4.37141 4.41603 4.58391 4.77605 4.86373 4.92644 5.00109 5.05037 5.18032 5.20143 5.30143 5.33440 5.43606 5.55821 5.62707 5.69499 5.85299 5.94133 6.01790 6.24359 6.25123 6.35449 6.56299 6.63147 6.69985 6.72845 7.15160 7.24556 7.69489 7.96316 8.33812 8.67263 8.89808 9.61457 9.98779 11.10576 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003597 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.126195 B = 7782.527055 C = 8673.213687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 H 0.102 0.898 4 C -0.004 4.004 5 C 0.198 3.802 6 N -0.418 5.418 7 S -0.115 6.115 8 C -0.127 4.127 9 C -0.115 4.115 10 C -0.133 4.133 11 C -0.099 4.099 12 C -0.119 4.119 13 C 0.187 3.813 14 N -0.682 5.682 15 C 0.486 3.514 16 O -0.494 6.494 17 C 0.119 3.881 18 N -0.584 5.584 19 C 0.129 3.871 20 C -0.263 4.263 21 H 0.083 0.917 22 C 0.033 3.967 23 N -0.894 5.894 24 Si 0.870 3.130 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.265 1.265 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.406 0.594 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.017 0.983 41 H 0.044 0.956 42 H 0.031 0.969 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 9.079 22.661 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.208 4.208 3 H 0.121 0.879 4 C -0.045 4.045 5 C -0.121 4.121 6 N -0.094 5.094 7 S 0.128 5.872 8 C -0.242 4.242 9 C -0.139 4.139 10 C -0.154 4.154 11 C -0.120 4.120 12 C -0.141 4.141 13 C 0.085 3.915 14 N -0.328 5.328 15 C 0.272 3.728 16 O -0.365 6.365 17 C -0.012 4.012 18 N -0.305 5.305 19 C -0.015 4.015 20 C -0.392 4.392 21 H 0.100 0.900 22 C -0.168 4.168 23 N -0.535 5.535 24 Si 0.700 3.300 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.190 1.190 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.177 0.823 37 H 0.242 0.758 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.609 8.551 21.996 24.046 hybrid contribution -1.369 0.162 0.980 1.691 sum -5.978 8.713 22.976 25.289 Atomic orbital electron populations 1.22179 0.91160 1.04098 1.03634 1.23363 1.00328 1.02870 0.94229 0.87932 1.19101 0.82539 1.04450 0.98454 1.28905 0.95135 0.94156 0.93891 1.81255 1.12688 1.07714 1.07757 1.85418 1.76579 1.27305 0.97946 1.21269 1.09897 0.98599 0.94486 1.20885 1.01160 0.92437 0.99423 1.20931 1.02334 0.99412 0.92723 1.21168 0.97990 0.96375 0.96420 1.21727 0.97800 0.93668 1.00879 1.17516 0.95519 0.87731 0.90749 1.44327 1.52110 1.09923 1.26466 1.23483 0.77405 0.93075 0.78854 1.90554 1.59295 1.41792 1.44898 1.21464 0.96379 0.92261 0.91092 1.43718 1.07486 1.76762 1.02524 1.21085 0.84411 0.96578 0.99473 1.18834 1.21861 1.10703 0.87775 0.89979 1.25459 0.97079 0.97539 0.96714 1.69873 1.17207 1.31890 1.34491 0.87031 0.78432 0.82847 0.81732 1.21296 1.22268 1.18954 0.90589 0.91066 0.90831 0.85618 0.86344 0.85782 0.86047 0.85633 0.82327 0.75838 0.90611 0.89923 0.96527 0.93742 0.94998 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.70 37.15 0.32 -0.33 16 2 C -0.08 -0.46 2.01 -26.74 -0.05 -0.51 16 3 H 0.10 0.61 6.84 -51.92 -0.36 0.25 16 4 C 0.00 -0.02 5.18 -29.52 -0.15 -0.17 16 5 C 0.20 1.73 14.79 -20.76 -0.31 1.42 16 6 N -0.42 -5.24 18.54 42.15 0.78 -4.46 16 7 S -0.11 -1.22 19.45 -107.50 -2.09 -3.31 16 8 C -0.13 -1.68 6.02 -38.90 -0.23 -1.91 16 9 C -0.12 -1.27 8.08 -39.39 -0.32 -1.59 16 10 C -0.13 -1.50 10.04 -39.58 -0.40 -1.90 16 11 C -0.10 -1.33 10.04 -39.56 -0.40 -1.73 16 12 C -0.12 -2.02 8.77 -39.42 -0.35 -2.36 16 13 C 0.19 3.06 6.43 -83.43 -0.54 2.53 16 14 N -0.68 -11.83 5.14 -9.71 -0.05 -11.88 16 15 C 0.49 10.25 7.78 -10.99 -0.09 10.16 16 16 O -0.49 -11.91 13.46 5.54 0.07 -11.83 16 17 C 0.12 2.57 4.95 -5.19 -0.03 2.54 16 18 N -0.58 -14.36 1.99 -182.50 -0.36 -14.73 16 19 C 0.13 2.72 10.69 59.85 0.64 3.36 16 20 C -0.26 -7.53 9.96 -15.06 -0.15 -7.68 16 21 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 22 C 0.03 0.94 5.33 -17.43 -0.09 0.85 16 23 N -0.89 -27.26 13.97 55.49 0.78 -26.48 16 24 Si 0.87 21.21 24.92 -169.99 -4.24 16.97 16 25 H -0.28 -6.52 6.70 56.52 0.38 -6.14 16 26 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.45 6.16 -51.93 -0.32 0.13 16 31 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.12 1.00 4.93 -52.48 -0.26 0.74 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.16 3.18 5.67 -52.49 -0.30 2.88 16 37 H 0.41 6.11 7.72 -40.82 -0.32 5.79 16 38 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 39 H 0.08 1.87 3.09 -51.93 -0.16 1.71 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -35.99 368.93 -7.19 -43.17 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.50 Total: 4.31 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.13 Total: 2.67 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 1.14 Total: -57.55 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.24 Total: 16.97 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.09 Total: -3.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.99 -7.19 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.421 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds