Wall clock time and date at job start Tue Mar 31 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47033 * 2 1 4 4 C 1.52996 * 109.47158 * 120.00246 * 2 1 3 5 5 C 1.47193 * 109.47577 * 185.00321 * 4 2 1 6 6 N 3.43547 * 154.82374 * 111.57040 * 2 1 3 7 7 S 1.81404 * 109.47216 * 239.99907 * 2 1 3 8 8 C 1.76201 * 103.00088 * 71.19349 * 7 2 1 9 9 C 1.38794 * 120.10297 * 4.26240 * 8 7 2 10 10 C 1.38197 * 119.98430 * 180.27207 * 9 8 7 11 11 C 1.38289 * 120.20212 * 359.73089 * 10 9 8 12 12 C 1.38252 * 120.21431 * 359.97438 * 11 10 9 13 13 C 1.38653 * 120.00499 * 359.97438 * 12 11 10 14 14 N 1.40137 * 120.10042 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99967 * 27.67678 * 14 13 12 16 16 O 1.21303 * 120.00222 * 355.86786 * 15 14 13 17 17 C 1.50702 * 120.00267 * 175.58812 * 15 14 13 18 18 N 1.46502 * 109.47125 * 180.27188 * 17 15 14 19 19 C 1.46507 * 119.99295 * 90.00539 * 18 17 15 20 20 C 1.36932 * 120.00392 * 269.99977 * 18 17 15 21 21 H 1.08005 * 119.99808 * 143.20663 * 20 18 17 22 22 C 1.38804 * 120.00052 * 323.21121 * 20 18 17 23 23 N 1.31626 * 119.99957 * 158.67794 * 22 20 18 24 24 Si 1.86798 * 120.00189 * 338.67870 * 22 20 18 25 25 H 1.48495 * 109.47046 * 95.69112 * 24 22 20 26 26 H 1.48500 * 109.47088 * 215.69009 * 24 22 20 27 27 H 1.48494 * 109.46969 * 335.69006 * 24 22 20 28 28 H 1.08998 * 109.47493 * 185.67605 * 1 2 3 29 29 H 1.09002 * 109.47457 * 305.68025 * 1 2 3 30 30 H 1.09004 * 109.47154 * 65.68007 * 1 2 3 31 31 H 1.09002 * 109.46768 * 305.00215 * 4 2 1 32 32 H 1.09000 * 109.47272 * 64.99715 * 4 2 1 33 33 H 1.08004 * 120.00307 * 359.97438 * 9 8 7 34 34 H 1.08004 * 119.89472 * 179.69996 * 10 9 8 35 35 H 1.08006 * 119.89582 * 180.02562 * 11 10 9 36 36 H 1.07992 * 119.99821 * 179.97438 * 12 11 10 37 37 H 0.96998 * 120.00362 * 207.67518 * 14 13 12 38 38 H 1.08997 * 109.47364 * 300.28044 * 17 15 14 39 39 H 1.09005 * 109.46521 * 60.28068 * 17 15 14 40 40 H 1.08998 * 109.47183 * 95.04120 * 19 18 17 41 41 H 1.09001 * 109.46492 * 215.03595 * 19 18 17 42 42 H 1.08993 * 109.47442 * 335.04096 * 19 18 17 43 43 H 0.96997 * 119.99862 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5069 -0.6174 1.3113 6 7 4.6390 -0.5373 1.3591 7 16 2.1346 -0.8552 -1.4811 8 6 1.7450 0.2732 -2.7772 9 6 1.1999 1.5143 -2.4792 10 6 0.8899 2.3952 -3.4979 11 6 1.1264 2.0464 -4.8151 12 6 1.6747 0.8147 -5.1210 13 6 1.9900 -0.0754 -4.1057 14 7 2.5463 -1.3242 -4.4134 15 6 3.2774 -1.4783 -5.5351 16 8 3.3915 -0.5571 -6.3160 17 6 3.9582 -2.7930 -5.8163 18 7 4.6890 -2.7035 -7.0829 19 6 6.0848 -2.2584 -7.0932 20 6 4.0676 -3.0359 -8.2569 21 1 4.2806 -2.4786 -9.1573 22 6 3.1638 -4.0889 -8.2899 23 7 2.2695 -4.1587 -9.2531 24 14 3.2168 -5.4070 -6.9673 25 1 2.2331 -5.0808 -5.9038 26 1 2.8797 -6.7232 -7.5665 27 1 4.5796 -5.4647 -6.3803 28 1 -0.3634 -1.0226 0.1016 29 1 -0.3634 0.5994 0.8347 30 1 -0.3634 0.4232 -0.9365 31 1 1.6052 -0.2618 2.1369 32 1 1.7515 -1.7715 1.2055 33 1 1.0135 1.7897 -1.4516 34 1 0.4613 3.3587 -3.2647 35 1 0.8827 2.7388 -5.6074 36 1 1.8575 0.5458 -6.1508 37 1 2.4054 -2.0778 -3.8192 38 1 4.6552 -3.0210 -5.0099 39 1 3.2097 -3.5826 -5.8837 40 1 6.7432 -3.1268 -7.0753 41 1 6.2741 -1.6775 -7.9959 42 1 6.2754 -1.6397 -6.2164 43 1 1.6382 -4.8948 -9.2764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108362457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:51 Heat of formation + Delta-G solvation = 32.076137 kcal Electronic energy + Delta-G solvation = -25796.782390 eV Core-core repulsion = 22161.783931 eV Total energy + Delta-G solvation = -3634.998459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53550 -39.52238 -38.09214 -37.32053 -35.91746 -35.41796 -33.81452 -32.11529 -31.24591 -29.12377 -29.05351 -27.99086 -24.52558 -23.98231 -23.41648 -22.73702 -21.59385 -19.63091 -18.93564 -18.40017 -18.25238 -17.88337 -17.36323 -17.26227 -16.35929 -15.92994 -15.78737 -15.48648 -15.22245 -15.19490 -14.84307 -14.71867 -14.61642 -14.44541 -14.12377 -14.07438 -13.73790 -13.57821 -13.27461 -13.18413 -12.90930 -12.75166 -12.67714 -12.59405 -12.45175 -12.23205 -12.13813 -11.94741 -11.68773 -11.51134 -10.93179 -10.90116 -10.70912 -10.57522 -9.33710 -8.93102 -8.29042 -8.25205 -5.67995 0.15636 0.33163 0.43920 1.22965 1.36352 1.39310 1.50389 1.67361 1.79103 1.88953 2.01035 2.35816 2.74964 2.97068 3.03391 3.29794 3.71554 3.78656 3.86359 4.02474 4.14133 4.21254 4.21910 4.27017 4.37673 4.46978 4.53237 4.57238 4.67711 4.79699 4.86251 4.93621 4.95180 5.02518 5.06601 5.15826 5.26398 5.44794 5.47568 5.58095 5.81946 5.99022 6.09524 6.35702 6.65646 6.81388 7.17057 7.48930 7.88314 8.94753 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003597 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.126195 B = 7782.527055 C = 8673.213687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 H 0.109 0.891 4 C -0.002 4.002 5 C 0.224 3.776 6 N -0.496 5.496 7 S -0.150 6.150 8 C -0.120 4.120 9 C -0.108 4.108 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.150 4.150 13 C 0.148 3.852 14 N -0.668 5.668 15 C 0.484 3.516 16 O -0.538 6.538 17 C 0.115 3.885 18 N -0.599 5.599 19 C 0.129 3.871 20 C -0.267 4.267 21 H 0.029 0.971 22 C -0.025 4.025 23 N -0.947 5.947 24 Si 0.944 3.056 25 H -0.259 1.259 26 H -0.299 1.299 27 H -0.245 1.245 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.177 0.823 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.416 0.584 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 9.522 28.298 31.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 H 0.127 0.873 4 C -0.042 4.042 5 C -0.093 4.093 6 N -0.173 5.173 7 S 0.092 5.908 8 C -0.235 4.235 9 C -0.132 4.132 10 C -0.138 4.138 11 C -0.130 4.130 12 C -0.172 4.172 13 C 0.047 3.953 14 N -0.315 5.315 15 C 0.270 3.730 16 O -0.413 6.413 17 C -0.015 4.015 18 N -0.321 5.321 19 C -0.015 4.015 20 C -0.397 4.397 21 H 0.047 0.953 22 C -0.221 4.221 23 N -0.590 5.590 24 Si 0.770 3.230 25 H -0.186 1.186 26 H -0.227 1.227 27 H -0.168 1.168 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.194 0.806 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.132 0.868 37 H 0.254 0.746 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.175 9.010 27.707 29.783 hybrid contribution -0.984 0.212 -0.658 1.202 sum -7.159 9.222 27.049 29.461 Atomic orbital electron populations 1.22181 0.89254 1.05189 1.04149 1.23574 1.01577 1.02566 0.91611 0.87286 1.19550 0.79333 1.06140 0.99213 1.29804 0.96009 0.91867 0.91610 1.81289 1.15290 1.10388 1.10357 1.85557 1.77096 1.28208 0.99929 1.21454 1.08408 0.99806 0.93854 1.21404 0.99268 0.91188 1.01337 1.21386 1.00272 1.00781 0.91349 1.21357 0.97929 0.95251 0.98429 1.21501 1.00486 0.95950 0.99242 1.17669 0.97930 0.87298 0.92356 1.43892 1.51205 1.11098 1.25316 1.23164 0.77839 0.92477 0.79509 1.90562 1.61060 1.43072 1.46588 1.21561 0.96989 0.92147 0.90804 1.43778 1.08874 1.77290 1.02197 1.21162 0.83068 0.97436 0.99854 1.18610 1.22329 1.10563 0.88182 0.95277 1.26200 0.96234 0.99679 1.00038 1.70030 1.18504 1.32832 1.37682 0.85843 0.79993 0.78208 0.78966 1.18554 1.22719 1.16807 0.89984 0.87632 0.92457 0.80567 0.84309 0.81870 0.82067 0.84409 0.86767 0.74565 0.86506 0.90710 0.94567 0.95187 0.92798 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 8.70 71.98 0.63 0.21 16 2 C -0.06 -0.42 2.01 30.59 0.06 -0.36 16 3 H 0.11 0.66 6.84 -2.39 -0.02 0.65 16 4 C 0.00 0.00 5.18 28.79 0.15 0.15 16 5 C 0.22 3.20 14.79 89.44 1.32 4.52 16 6 N -0.50 -11.73 18.54 20.00 0.37 -11.36 16 7 S -0.15 -2.77 19.45 -56.49 -1.10 -3.87 16 8 C -0.12 -2.95 6.02 22.71 0.14 -2.81 16 9 C -0.11 -2.00 8.08 22.39 0.18 -1.82 16 10 C -0.12 -2.28 10.04 22.27 0.22 -2.05 16 11 C -0.11 -2.91 10.04 22.29 0.22 -2.68 16 12 C -0.15 -5.37 8.77 22.37 0.20 -5.18 16 13 C 0.15 4.92 6.43 38.22 0.25 5.16 16 14 N -0.67 -23.50 5.14 -303.00 -1.56 -25.06 16 15 C 0.48 21.06 7.78 87.66 0.68 21.74 16 16 O -0.54 -27.71 13.46 -3.10 -0.04 -27.76 16 17 C 0.11 4.91 4.95 85.63 0.42 5.34 16 18 N -0.60 -30.12 1.99 -731.30 -1.45 -31.57 16 19 C 0.13 5.46 10.69 127.77 1.37 6.83 16 20 C -0.27 -16.13 9.96 84.03 0.84 -15.30 16 21 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 22 C -0.03 -1.49 5.33 84.86 0.45 -1.04 16 23 N -0.95 -60.68 13.97 21.65 0.30 -60.38 16 24 Si 0.94 44.16 24.92 68.60 1.71 45.87 16 25 H -0.26 -10.95 6.70 99.48 0.67 -10.29 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.24 -10.58 7.11 99.48 0.71 -9.88 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.06 0.40 6.16 -2.38 -0.01 0.39 16 31 H 0.18 -1.13 8.14 -2.39 -0.02 -1.15 16 32 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.16 1.70 4.93 -2.91 -0.01 1.68 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.11 5.10 5.67 -2.91 -0.02 5.08 16 37 H 0.42 12.31 7.72 -92.71 -0.72 11.59 16 38 H 0.12 3.98 8.07 -2.39 -0.02 3.96 16 39 H 0.08 3.31 3.09 -2.38 -0.01 3.30 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 42 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -88.64 368.93 5.66 -82.98 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.30 Total: 18.44 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.13 Total: 12.70 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -2.34 Total: -128.36 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.04 Total: -27.76 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.71 Total: 45.87 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.10 Total: -3.87 kcal Total: -88.64 5.66 -82.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.055 kcal (2) G-P(sol) polarization free energy of solvation -88.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds