Wall clock time and date at job start Tue Mar 31 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47342 * 2 1 4 4 C 1.53004 * 109.46984 * 240.00372 * 2 1 3 5 5 C 1.47201 * 109.47077 * 174.99929 * 4 2 1 6 6 N 3.43555 * 154.82427 * 248.43323 * 2 1 3 7 7 S 1.81401 * 109.47186 * 120.00387 * 2 1 3 8 8 C 1.76195 * 102.99984 * 288.61748 * 7 2 1 9 9 C 1.38789 * 120.10540 * 357.77409 * 8 7 2 10 10 C 1.38200 * 119.99145 * 179.97438 * 9 8 7 11 11 C 1.38295 * 120.19666 * 0.02562 * 10 9 8 12 12 C 1.38249 * 120.21143 * 359.97102 * 11 10 9 13 13 C 1.38651 * 120.00989 * 0.30530 * 12 11 10 14 14 N 1.40136 * 120.10069 * 179.72442 * 13 12 11 15 15 C 1.34780 * 120.00050 * 21.42151 * 14 13 12 16 16 O 1.21296 * 119.99755 * 5.52720 * 15 14 13 17 17 C 1.50701 * 119.99945 * 185.51904 * 15 14 13 18 18 N 1.46500 * 109.47037 * 180.02562 * 17 15 14 19 19 C 1.46498 * 120.00448 * 90.00037 * 18 17 15 20 20 C 1.36946 * 119.99816 * 269.99907 * 18 17 15 21 21 H 1.07999 * 119.99580 * 20.57656 * 20 18 17 22 22 C 1.38806 * 119.99967 * 200.57640 * 20 18 17 23 23 N 1.31615 * 120.00104 * 13.45041 * 22 20 18 24 24 Si 1.86801 * 119.99767 * 193.44912 * 22 20 18 25 25 H 1.48498 * 109.47060 * 90.00165 * 24 22 20 26 26 H 1.48499 * 109.47015 * 209.99538 * 24 22 20 27 27 H 1.48498 * 109.47404 * 330.00266 * 24 22 20 28 28 H 1.09001 * 109.46865 * 182.67231 * 1 2 3 29 29 H 1.08999 * 109.46894 * 302.67266 * 1 2 3 30 30 H 1.09002 * 109.47046 * 62.67223 * 1 2 3 31 31 H 1.08999 * 109.46968 * 294.99581 * 4 2 1 32 32 H 1.08996 * 109.47014 * 55.00301 * 4 2 1 33 33 H 1.08005 * 120.00154 * 359.95995 * 9 8 7 34 34 H 1.07992 * 119.89774 * 180.02562 * 10 9 8 35 35 H 1.08003 * 119.89243 * 179.97438 * 11 10 9 36 36 H 1.08010 * 119.99585 * 180.02562 * 12 11 10 37 37 H 0.96994 * 120.00133 * 201.43027 * 14 13 12 38 38 H 1.08994 * 109.47186 * 300.00267 * 17 15 14 39 39 H 1.08997 * 109.46939 * 60.00537 * 17 15 14 40 40 H 1.09003 * 109.46857 * 93.06701 * 19 18 17 41 41 H 1.08999 * 109.47156 * 213.06407 * 19 18 17 42 42 H 1.08998 * 109.46654 * 333.06875 * 19 18 17 43 43 H 0.97004 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5070 -0.6173 -1.3114 6 7 4.6392 -0.5372 -1.3592 7 16 2.1347 -0.8552 1.4811 8 6 1.7501 0.2755 2.7765 9 6 1.1689 1.5007 2.4813 10 6 0.8677 2.3856 3.4992 11 6 1.1442 2.0545 4.8132 12 6 1.7230 0.8363 5.1166 13 6 2.0340 -0.0557 4.1017 14 7 2.6260 -1.2887 4.4066 15 6 2.5087 -1.8044 5.6463 16 8 1.8085 -1.2527 6.4688 17 6 3.2474 -3.0665 6.0104 18 7 2.9566 -3.4182 7.4025 19 6 1.8183 -4.2852 7.7166 20 6 3.7488 -2.9363 8.4102 21 1 4.3604 -2.0616 8.2449 22 6 3.7658 -3.5721 9.6440 23 7 3.2401 -4.7717 9.7735 24 14 4.5349 -2.7250 11.1207 25 1 3.5018 -1.9246 11.8258 26 1 5.0860 -3.7472 12.0462 27 1 5.6282 -1.8298 10.6640 28 1 -0.3633 -1.0266 0.0479 29 1 -0.3633 0.5548 0.8651 30 1 -0.3633 0.4718 -0.9130 31 1 1.7517 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 0.9522 1.7627 1.4561 34 1 0.4151 3.3384 3.2679 35 1 0.9072 2.7500 5.6048 36 1 1.9371 0.5811 6.1441 37 1 3.1203 -1.7710 3.7255 38 1 2.9259 -3.8771 5.3565 39 1 4.3191 -2.9073 5.8918 40 1 2.1536 -5.3212 7.7663 41 1 1.3942 -3.9942 8.6776 42 1 1.0604 -4.1855 6.9397 43 1 3.2516 -5.2158 10.6358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108362461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:55 Heat of formation + Delta-G solvation = 52.823499 kcal Electronic energy + Delta-G solvation = -25402.732508 eV Core-core repulsion = 21768.633722 eV Total energy + Delta-G solvation = -3634.098786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17835 -38.20903 -37.48652 -35.37199 -35.05051 -34.27063 -31.40507 -31.13527 -29.70564 -28.71042 -27.00641 -25.80763 -23.46003 -23.04631 -22.46653 -21.31778 -19.81925 -18.54427 -17.72197 -17.21659 -16.85836 -16.49781 -16.48688 -15.05365 -14.98755 -14.97056 -14.67189 -14.29227 -14.13749 -13.94759 -13.58426 -13.41965 -13.33397 -13.19068 -12.97903 -12.73359 -12.54803 -12.31296 -12.15655 -11.90815 -11.76988 -11.75039 -11.25856 -11.14581 -10.86889 -10.74596 -10.40796 -10.37069 -10.25342 -10.00728 -9.91206 -9.75235 -9.18980 -8.52599 -8.19889 -7.36224 -6.85450 -5.75643 -3.19583 1.13075 1.19940 1.39523 2.08317 2.37983 2.47143 3.17306 3.33847 3.43636 3.47013 3.47451 3.48535 3.84380 4.10337 4.35816 4.50097 4.57252 4.74147 4.85228 4.99641 5.01552 5.15442 5.18364 5.32242 5.34659 5.45417 5.49850 5.55935 5.63530 5.70458 5.93578 6.05695 6.20445 6.22799 6.31919 6.54018 6.66470 6.76244 7.11916 7.21772 7.41510 7.66446 7.74184 7.81393 8.32458 8.69941 9.18706 9.79625 10.25555 11.30267 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002806 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.396244 B = 9976.679831 C =10777.550032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 H 0.102 0.898 4 C -0.005 4.005 5 C 0.198 3.802 6 N -0.418 5.418 7 S -0.115 6.115 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.136 4.136 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.190 3.810 14 N -0.679 5.679 15 C 0.474 3.526 16 O -0.496 6.496 17 C 0.136 3.864 18 N -0.573 5.573 19 C 0.165 3.835 20 C -0.254 4.254 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.906 5.906 24 Si 0.909 3.091 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.159 0.841 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.051 0.949 42 H -0.004 1.004 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 10.437 -23.572 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.206 4.206 3 H 0.120 0.880 4 C -0.046 4.046 5 C -0.120 4.120 6 N -0.095 5.095 7 S 0.127 5.873 8 C -0.246 4.246 9 C -0.138 4.138 10 C -0.157 4.157 11 C -0.118 4.118 12 C -0.148 4.148 13 C 0.088 3.912 14 N -0.325 5.325 15 C 0.261 3.739 16 O -0.368 6.368 17 C 0.002 3.998 18 N -0.292 5.292 19 C 0.020 3.980 20 C -0.383 4.383 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.551 5.551 24 Si 0.738 3.262 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.177 0.823 37 H 0.242 0.758 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.015 0.985 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.829 9.562 -22.786 25.389 hybrid contribution -0.519 1.595 0.489 1.747 sum -6.348 11.156 -22.297 25.728 Atomic orbital electron populations 1.22203 0.91149 1.04403 1.03450 1.23345 1.00379 1.02775 0.94147 0.87980 1.19111 0.82522 1.04541 0.98437 1.28912 0.95128 0.94116 0.93872 1.81257 1.12678 1.07764 1.07770 1.85337 1.77004 1.27092 0.97888 1.21224 1.09006 0.99501 0.94893 1.20911 1.00614 0.92823 0.99464 1.20924 1.02556 0.99490 0.92740 1.21157 0.98046 0.96228 0.96378 1.21712 0.99794 0.92310 1.00937 1.17539 0.95821 0.86779 0.91071 1.44373 1.53925 1.19310 1.14894 1.24088 0.81569 0.88681 0.79610 1.90563 1.37127 1.60575 1.48548 1.20688 0.98330 0.91517 0.89217 1.43623 1.30636 1.55669 0.99268 1.20852 0.86260 0.93806 0.97053 1.19161 1.20440 1.07335 0.91391 0.91413 1.24932 1.00090 0.95563 0.98751 1.70091 1.49233 1.12094 1.23648 0.86194 0.78791 0.78527 0.82648 1.21381 1.21695 1.20454 0.90489 0.90845 0.91002 0.86290 0.85613 0.85712 0.86087 0.85709 0.82329 0.75806 0.90924 0.89779 0.95025 0.93047 0.98524 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.77 37.16 0.33 -0.31 16 2 C -0.08 -0.41 2.01 -26.73 -0.05 -0.46 16 3 H 0.10 0.55 6.93 -51.92 -0.36 0.19 16 4 C 0.00 -0.02 5.19 -29.52 -0.15 -0.17 16 5 C 0.20 1.59 14.79 -20.76 -0.31 1.28 16 6 N -0.42 -4.92 18.54 42.15 0.78 -4.14 16 7 S -0.12 -1.13 19.37 -107.50 -2.08 -3.21 16 8 C -0.13 -1.63 6.10 -38.90 -0.24 -1.87 16 9 C -0.11 -1.21 8.14 -39.39 -0.32 -1.53 16 10 C -0.14 -1.48 10.04 -39.57 -0.40 -1.88 16 11 C -0.10 -1.26 10.04 -39.56 -0.40 -1.66 16 12 C -0.13 -2.03 8.76 -39.42 -0.35 -2.38 16 13 C 0.19 2.93 6.49 -83.43 -0.54 2.39 16 14 N -0.68 -10.66 5.21 -9.71 -0.05 -10.71 16 15 C 0.47 9.24 7.73 -10.98 -0.08 9.15 16 16 O -0.50 -11.52 13.42 5.54 0.07 -11.45 16 17 C 0.14 2.71 6.14 -5.19 -0.03 2.68 16 18 N -0.57 -14.64 2.42 -182.51 -0.44 -15.08 16 19 C 0.16 4.18 8.97 59.85 0.54 4.72 16 20 C -0.25 -7.13 9.68 -15.06 -0.15 -7.27 16 21 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 22 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 23 N -0.91 -26.56 10.60 55.49 0.59 -25.97 16 24 Si 0.91 22.41 29.57 -169.99 -5.03 17.38 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.42 5.93 -51.93 -0.31 0.11 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.13 0.95 4.71 -52.48 -0.25 0.70 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 36 H 0.16 3.02 5.54 -52.48 -0.29 2.73 16 37 H 0.41 5.40 7.56 -40.82 -0.31 5.10 16 38 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 40 H 0.03 0.83 7.52 -51.93 -0.39 0.44 16 41 H 0.05 1.43 7.04 -51.93 -0.37 1.07 16 42 H 0.00 -0.09 8.05 -51.93 -0.42 -0.51 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -35.52 372.62 -8.39 -43.92 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.61 Total: 0.90 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.24 Total: 2.75 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.88 Total: -55.90 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.08 Total: -3.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.52 -8.39 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.739 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds