Wall clock time and date at job start Tue Mar 31 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47342 * 2 1 4 4 C 1.53004 * 109.46984 * 240.00372 * 2 1 3 5 5 C 1.47201 * 109.47077 * 174.99929 * 4 2 1 6 6 N 3.43555 * 154.82427 * 248.43323 * 2 1 3 7 7 S 1.81401 * 109.47186 * 120.00387 * 2 1 3 8 8 C 1.76195 * 102.99984 * 288.61748 * 7 2 1 9 9 C 1.38789 * 120.10540 * 357.77409 * 8 7 2 10 10 C 1.38200 * 119.99145 * 179.97438 * 9 8 7 11 11 C 1.38295 * 120.19666 * 0.02562 * 10 9 8 12 12 C 1.38249 * 120.21143 * 359.97102 * 11 10 9 13 13 C 1.38651 * 120.00989 * 0.30530 * 12 11 10 14 14 N 1.40136 * 120.10069 * 179.72442 * 13 12 11 15 15 C 1.34780 * 120.00050 * 21.42151 * 14 13 12 16 16 O 1.21296 * 119.99755 * 5.52720 * 15 14 13 17 17 C 1.50701 * 119.99945 * 185.51904 * 15 14 13 18 18 N 1.46500 * 109.47037 * 180.02562 * 17 15 14 19 19 C 1.46498 * 120.00448 * 90.00037 * 18 17 15 20 20 C 1.36946 * 119.99816 * 269.99907 * 18 17 15 21 21 H 1.07999 * 119.99580 * 20.57656 * 20 18 17 22 22 C 1.38806 * 119.99967 * 200.57640 * 20 18 17 23 23 N 1.31615 * 120.00104 * 13.45041 * 22 20 18 24 24 Si 1.86801 * 119.99767 * 193.44912 * 22 20 18 25 25 H 1.48498 * 109.47060 * 90.00165 * 24 22 20 26 26 H 1.48499 * 109.47015 * 209.99538 * 24 22 20 27 27 H 1.48498 * 109.47404 * 330.00266 * 24 22 20 28 28 H 1.09001 * 109.46865 * 182.67231 * 1 2 3 29 29 H 1.08999 * 109.46894 * 302.67266 * 1 2 3 30 30 H 1.09002 * 109.47046 * 62.67223 * 1 2 3 31 31 H 1.08999 * 109.46968 * 294.99581 * 4 2 1 32 32 H 1.08996 * 109.47014 * 55.00301 * 4 2 1 33 33 H 1.08005 * 120.00154 * 359.95995 * 9 8 7 34 34 H 1.07992 * 119.89774 * 180.02562 * 10 9 8 35 35 H 1.08003 * 119.89243 * 179.97438 * 11 10 9 36 36 H 1.08010 * 119.99585 * 180.02562 * 12 11 10 37 37 H 0.96994 * 120.00133 * 201.43027 * 14 13 12 38 38 H 1.08994 * 109.47186 * 300.00267 * 17 15 14 39 39 H 1.08997 * 109.46939 * 60.00537 * 17 15 14 40 40 H 1.09003 * 109.46857 * 93.06701 * 19 18 17 41 41 H 1.08999 * 109.47156 * 213.06407 * 19 18 17 42 42 H 1.08998 * 109.46654 * 333.06875 * 19 18 17 43 43 H 0.97004 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5070 -0.6173 -1.3114 6 7 4.6392 -0.5372 -1.3592 7 16 2.1347 -0.8552 1.4811 8 6 1.7501 0.2755 2.7765 9 6 1.1689 1.5007 2.4813 10 6 0.8677 2.3856 3.4992 11 6 1.1442 2.0545 4.8132 12 6 1.7230 0.8363 5.1166 13 6 2.0340 -0.0557 4.1017 14 7 2.6260 -1.2887 4.4066 15 6 2.5087 -1.8044 5.6463 16 8 1.8085 -1.2527 6.4688 17 6 3.2474 -3.0665 6.0104 18 7 2.9566 -3.4182 7.4025 19 6 1.8183 -4.2852 7.7166 20 6 3.7488 -2.9363 8.4102 21 1 4.3604 -2.0616 8.2449 22 6 3.7658 -3.5721 9.6440 23 7 3.2401 -4.7717 9.7735 24 14 4.5349 -2.7250 11.1207 25 1 3.5018 -1.9246 11.8258 26 1 5.0860 -3.7472 12.0462 27 1 5.6282 -1.8298 10.6640 28 1 -0.3633 -1.0266 0.0479 29 1 -0.3633 0.5548 0.8651 30 1 -0.3633 0.4718 -0.9130 31 1 1.7517 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 0.9522 1.7627 1.4561 34 1 0.4151 3.3384 3.2679 35 1 0.9072 2.7500 5.6048 36 1 1.9371 0.5811 6.1441 37 1 3.1203 -1.7710 3.7255 38 1 2.9259 -3.8771 5.3565 39 1 4.3191 -2.9073 5.8918 40 1 2.1536 -5.3212 7.7663 41 1 1.3942 -3.9942 8.6776 42 1 1.0604 -4.1855 6.9397 43 1 3.2516 -5.2158 10.6358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108362461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:55 Heat of formation + Delta-G solvation = 30.723537 kcal Electronic energy + Delta-G solvation = -25403.690834 eV Core-core repulsion = 21768.633722 eV Total energy + Delta-G solvation = -3635.057112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48482 -39.43872 -38.07798 -37.17926 -35.89038 -35.39115 -33.40005 -32.09103 -30.98812 -29.09316 -28.66256 -27.90145 -24.60668 -24.01122 -23.47866 -22.65030 -21.28114 -19.40730 -18.86334 -18.43814 -18.12277 -17.78835 -17.29738 -16.85022 -16.42617 -15.82111 -15.78389 -15.47795 -15.15588 -14.93558 -14.92871 -14.81451 -14.55461 -14.21226 -14.02980 -13.76506 -13.54283 -13.25288 -13.09522 -12.89160 -12.85036 -12.72385 -12.62512 -12.58915 -12.36455 -12.19085 -12.07231 -11.96548 -11.93962 -11.51530 -10.92628 -10.89298 -10.68293 -10.51686 -9.27467 -8.90261 -8.24654 -7.89786 -5.35710 0.18457 0.35310 0.46185 1.37109 1.41663 1.45397 1.52912 1.73152 1.80289 1.90218 2.07628 2.48378 2.79006 3.03965 3.26290 3.60265 3.72324 3.82249 3.93584 4.03369 4.17749 4.22787 4.39879 4.46249 4.51656 4.55465 4.61312 4.68317 4.76333 4.80666 4.88482 4.94333 5.05292 5.16495 5.27978 5.31061 5.45152 5.50305 5.53501 5.60325 5.64749 6.01708 6.21618 6.45750 6.66729 7.06543 7.23759 7.75651 8.17087 9.14775 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002806 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.396244 B = 9976.679831 C =10777.550032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.063 4.063 3 H 0.110 0.890 4 C -0.002 4.002 5 C 0.225 3.775 6 N -0.494 5.494 7 S -0.149 6.149 8 C -0.126 4.126 9 C -0.109 4.109 10 C -0.123 4.123 11 C -0.108 4.108 12 C -0.155 4.155 13 C 0.154 3.846 14 N -0.664 5.664 15 C 0.481 3.519 16 O -0.542 6.542 17 C 0.133 3.867 18 N -0.594 5.594 19 C 0.182 3.818 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.048 4.048 23 N -0.933 5.933 24 Si 0.968 3.032 25 H -0.292 1.292 26 H -0.287 1.287 27 H -0.269 1.269 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.417 0.583 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.020 0.980 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 12.252 -27.391 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 H 0.128 0.872 4 C -0.043 4.043 5 C -0.092 4.092 6 N -0.172 5.172 7 S 0.093 5.907 8 C -0.241 4.241 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.129 4.129 12 C -0.177 4.177 13 C 0.053 3.947 14 N -0.310 5.310 15 C 0.267 3.733 16 O -0.417 6.417 17 C 0.002 3.998 18 N -0.314 5.314 19 C 0.037 3.963 20 C -0.392 4.392 21 H 0.080 0.920 22 C -0.243 4.243 23 N -0.579 5.579 24 Si 0.796 3.204 25 H -0.219 1.219 26 H -0.213 1.213 27 H -0.194 1.194 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.194 0.806 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.255 0.745 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.119 11.402 -26.692 29.886 hybrid contribution -0.206 1.138 1.408 1.822 sum -7.325 12.540 -25.285 29.159 Atomic orbital electron populations 1.22202 0.89505 1.04680 1.04560 1.23545 1.01421 1.02603 0.91683 0.87197 1.19542 0.79439 1.06136 0.99186 1.29765 0.95950 0.91876 0.91639 1.81291 1.15210 1.10377 1.10312 1.85490 1.77421 1.27959 0.99791 1.21428 1.07687 1.00568 0.94381 1.21416 0.98901 0.91638 1.01303 1.21365 1.00714 1.00760 0.91497 1.21352 0.97990 0.95295 0.98262 1.21519 1.02199 0.94452 0.99516 1.17680 0.98032 0.86474 0.92562 1.43892 1.53663 1.19703 1.13724 1.23490 0.81094 0.88248 0.80431 1.90570 1.39258 1.61707 1.50181 1.20923 0.99248 0.92620 0.87058 1.43753 1.30508 1.56085 1.01059 1.20546 0.86771 0.92943 0.96046 1.19383 1.20253 1.06968 0.92572 0.91952 1.25671 1.01273 0.96284 1.01121 1.70219 1.50699 1.13174 1.23848 0.85257 0.78021 0.77591 0.79499 1.21877 1.21266 1.19411 0.90527 0.92288 0.87418 0.84399 0.80634 0.81963 0.82331 0.84498 0.86274 0.74485 0.87839 0.88595 0.96420 0.96515 0.96191 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 8.77 71.98 0.63 0.19 16 2 C -0.06 -0.38 2.01 30.60 0.06 -0.32 16 3 H 0.11 0.59 6.93 -2.39 -0.02 0.57 16 4 C 0.00 0.00 5.19 28.79 0.15 0.14 16 5 C 0.22 2.98 14.79 89.44 1.32 4.31 16 6 N -0.49 -11.11 18.54 20.01 0.37 -10.73 16 7 S -0.15 -2.58 19.37 -56.49 -1.09 -3.67 16 8 C -0.13 -2.92 6.10 22.71 0.14 -2.78 16 9 C -0.11 -1.93 8.14 22.39 0.18 -1.75 16 10 C -0.12 -2.30 10.04 22.27 0.22 -2.07 16 11 C -0.11 -2.76 10.04 22.29 0.22 -2.53 16 12 C -0.15 -5.24 8.76 22.37 0.20 -5.04 16 13 C 0.15 4.78 6.49 38.22 0.25 5.03 16 14 N -0.66 -21.24 5.21 -303.00 -1.58 -22.82 16 15 C 0.48 19.34 7.73 87.66 0.68 20.02 16 16 O -0.54 -26.56 13.42 -3.08 -0.04 -26.60 16 17 C 0.13 5.37 6.14 85.63 0.53 5.89 16 18 N -0.59 -31.19 2.42 -731.32 -1.77 -32.96 16 19 C 0.18 9.54 8.97 127.77 1.15 10.69 16 20 C -0.26 -15.14 9.68 84.03 0.81 -14.32 16 21 H 0.06 3.58 7.86 -2.91 -0.02 3.56 16 22 C -0.05 -2.81 5.08 84.86 0.43 -2.38 16 23 N -0.93 -56.41 10.60 21.65 0.23 -56.18 16 24 Si 0.97 47.26 29.57 68.60 2.03 49.29 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.39 5.93 -2.39 -0.01 0.38 16 30 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.14 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.18 -1.19 8.14 -2.39 -0.02 -1.21 16 33 H 0.16 1.61 4.71 -2.91 -0.01 1.59 16 34 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.12 4.97 5.54 -2.91 -0.02 4.96 16 37 H 0.42 11.10 7.56 -92.71 -0.70 10.40 16 38 H 0.10 3.50 8.07 -2.39 -0.02 3.48 16 39 H 0.10 3.61 8.04 -2.39 -0.02 3.59 16 40 H 0.02 0.96 7.52 -2.39 -0.02 0.94 16 41 H 0.02 0.95 7.04 -2.39 -0.02 0.93 16 42 H 0.02 0.92 8.05 -2.39 -0.02 0.90 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -84.07 372.62 5.47 -78.60 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.35 Total: 10.00 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.97 Total: 15.06 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -2.75 Total: -122.69 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.04 Total: -26.60 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -1.09 Total: -3.67 kcal Total: -84.07 5.47 -78.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.324 kcal (2) G-P(sol) polarization free energy of solvation -84.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds