Wall clock time and date at job start Tue Mar 31 2020 18:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47082 * 2 1 4 4 C 1.47198 * 109.46947 * 239.99718 * 2 1 3 5 5 N 2.60799 * 109.46826 * 239.99631 * 2 1 3 6 6 C 1.53007 * 109.46663 * 119.99895 * 2 1 3 7 7 S 1.81394 * 109.47083 * 294.99678 * 6 2 1 8 8 C 1.76204 * 103.00086 * 180.02562 * 7 6 2 9 9 C 1.38789 * 120.09990 * 359.97438 * 8 7 6 10 10 C 1.38200 * 119.98386 * 180.02562 * 9 8 7 11 11 C 1.38291 * 120.20464 * 0.02562 * 10 9 8 12 12 C 1.38256 * 120.20938 * 359.97438 * 11 10 9 13 13 C 1.38651 * 120.00660 * 359.67618 * 12 11 10 14 14 N 1.40144 * 120.10265 * 180.32152 * 13 12 11 15 15 C 1.34771 * 119.99686 * 24.80222 * 14 13 12 16 16 O 1.21294 * 120.00267 * 5.57463 * 15 14 13 17 17 C 1.50703 * 120.00114 * 185.57956 * 15 14 13 18 18 N 1.46497 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.46494 * 120.00249 * 90.00450 * 18 17 15 20 20 C 1.36938 * 119.99543 * 269.99328 * 18 17 15 21 21 H 1.07995 * 120.00470 * 24.97064 * 20 18 17 22 22 C 1.38820 * 119.99774 * 204.95910 * 20 18 17 23 23 N 1.31615 * 119.99886 * 5.22676 * 22 20 18 24 24 Si 1.86801 * 119.99758 * 185.22728 * 22 20 18 25 25 H 1.48502 * 109.47289 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46906 * 120.00048 * 24 22 20 27 27 H 1.48496 * 109.47197 * 240.00178 * 24 22 20 28 28 H 1.08997 * 109.47626 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46903 * 300.00281 * 1 2 3 30 30 H 1.08995 * 109.46864 * 59.99720 * 1 2 3 31 31 H 1.08990 * 109.47118 * 55.00058 * 6 2 1 32 32 H 1.09000 * 109.46778 * 174.99849 * 6 2 1 33 33 H 1.07999 * 120.00492 * 0.02611 * 9 8 7 34 34 H 1.08005 * 119.89410 * 179.97438 * 10 9 8 35 35 H 1.08000 * 119.89775 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.99927 * 180.02562 * 12 11 10 37 37 H 0.96995 * 119.99970 * 204.80335 * 14 13 12 38 38 H 1.08999 * 109.46740 * 299.99873 * 17 15 14 39 39 H 1.09001 * 109.47305 * 59.99757 * 17 15 14 40 40 H 1.08995 * 109.47782 * 95.00441 * 19 18 17 41 41 H 1.09005 * 109.46907 * 215.00589 * 19 18 17 42 42 H 1.09006 * 109.47009 * 334.99792 * 19 18 17 43 43 H 0.97003 * 119.99663 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1294 6 6 2.0400 -0.7213 1.2493 7 16 1.5601 0.2156 2.7266 8 6 2.2233 -0.7512 4.0420 9 6 2.9152 -1.9220 3.7649 10 6 3.4339 -2.6787 4.7985 11 6 3.2656 -2.2735 6.1099 12 6 2.5778 -1.1086 6.3953 13 6 2.0600 -0.3390 5.3648 14 7 1.3682 0.8457 5.6514 15 6 1.6097 1.5055 6.8015 16 8 2.4955 1.1314 7.5409 17 6 0.7791 2.7081 7.1690 18 7 1.2356 3.2426 8.4543 19 6 2.2861 4.2629 8.4918 20 6 0.6800 2.7885 9.6207 21 1 0.2317 1.8068 9.6591 22 6 0.6935 3.5902 10.7540 23 7 1.1464 4.8238 10.6820 24 14 0.0686 2.9179 12.3810 25 1 -0.3824 1.5151 12.1965 26 1 1.1616 2.9579 13.3855 27 1 -1.0694 3.7460 12.8544 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 3.0482 -2.2416 2.7419 34 1 3.9717 -3.5898 4.5813 35 1 3.6727 -2.8689 6.9138 36 1 2.4486 -0.7951 7.4207 37 1 0.7158 1.1907 5.0221 38 1 0.8861 3.4725 6.3994 39 1 -0.2681 2.4160 7.2478 40 1 1.8306 5.2520 8.5379 41 1 2.9106 4.1091 9.3719 42 1 2.8990 4.1865 7.5936 43 1 1.1555 5.3841 11.4739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108362467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:17 Heat of formation + Delta-G solvation = 48.259874 kcal Electronic energy + Delta-G solvation = -25046.027415 eV Core-core repulsion = 21411.730735 eV Total energy + Delta-G solvation = -3634.296679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17582 -38.19429 -37.91338 -35.30568 -34.90082 -34.30881 -31.41697 -31.19121 -29.72305 -28.01839 -27.00289 -25.81725 -24.21460 -23.13069 -22.74273 -21.33319 -19.82621 -18.41970 -17.96534 -17.06966 -16.71290 -16.50918 -15.90487 -15.52395 -15.04214 -14.88562 -14.72908 -14.36315 -14.18272 -13.84956 -13.72350 -13.44694 -13.33889 -13.23702 -13.17622 -12.89230 -12.70401 -12.34775 -12.01610 -11.88636 -11.78398 -11.69534 -11.33895 -11.27076 -10.89409 -10.74419 -10.52528 -10.39895 -10.27273 -10.00087 -9.95098 -9.77420 -9.24048 -8.55476 -8.22675 -7.39283 -6.81928 -5.75840 -3.25361 1.02854 1.15825 1.36682 2.05955 2.27583 2.28539 3.16407 3.31475 3.39661 3.44200 3.45172 3.47507 3.81527 4.03572 4.17481 4.47620 4.53657 4.72811 4.86505 4.97505 5.00224 5.15577 5.22671 5.32850 5.34834 5.43234 5.50394 5.53029 5.62624 5.64514 5.90705 6.05555 6.18822 6.20372 6.29407 6.51103 6.63754 6.77150 7.03572 7.08173 7.43501 7.68963 7.74493 7.81383 8.33893 8.69466 9.18731 9.77916 10.25587 11.28936 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002519 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.329458 B =11111.329679 C =12087.420218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.024 3.976 3 H 0.126 0.874 4 C 0.213 3.787 5 N -0.426 5.426 6 C -0.109 4.109 7 S -0.095 6.095 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.135 4.135 11 C -0.097 4.097 12 C -0.120 4.120 13 C 0.191 3.809 14 N -0.681 5.681 15 C 0.474 3.526 16 O -0.498 6.498 17 C 0.137 3.863 18 N -0.574 5.574 19 C 0.165 3.835 20 C -0.253 4.253 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.907 5.907 24 Si 0.910 3.090 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.154 0.846 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.047 0.953 42 H -0.005 1.005 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -10.615 -19.821 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.001 3.999 3 H 0.144 0.856 4 C -0.107 4.107 5 N -0.102 5.102 6 C -0.258 4.258 7 S 0.146 5.854 8 C -0.251 4.251 9 C -0.135 4.135 10 C -0.155 4.155 11 C -0.117 4.117 12 C -0.142 4.142 13 C 0.089 3.911 14 N -0.327 5.327 15 C 0.260 3.740 16 O -0.369 6.369 17 C 0.003 3.997 18 N -0.293 5.293 19 C 0.021 3.979 20 C -0.382 4.382 21 H 0.085 0.915 22 C -0.193 4.193 23 N -0.552 5.552 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.171 0.829 37 H 0.242 0.758 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.013 0.987 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.335 -10.347 -20.451 22.922 hybrid contribution 0.230 -1.352 0.897 1.639 sum -0.105 -11.699 -19.554 22.787 Atomic orbital electron populations 1.21948 0.90796 1.03947 1.04277 1.18533 0.97947 0.99169 0.84250 0.85617 1.28952 0.93471 0.93845 0.94420 1.81265 1.08616 1.09026 1.11280 1.23649 1.05322 1.02657 0.94207 1.85090 1.70913 1.33441 0.95909 1.21305 1.07884 1.01197 0.94707 1.20839 0.99188 0.94213 0.99307 1.20929 1.01760 1.00209 0.92650 1.21146 0.98033 0.96022 0.96534 1.21538 0.98817 0.93485 1.00386 1.17482 0.95430 0.87394 0.90781 1.44371 1.41999 1.22988 1.23353 1.24108 0.85060 0.86100 0.78744 1.90603 1.30660 1.66284 1.49353 1.20702 0.96505 0.91655 0.90836 1.43620 1.41199 1.44622 0.99864 1.20885 0.89149 0.91576 0.96295 1.19182 1.33056 0.98049 0.87954 0.91509 1.25080 0.99987 0.95260 0.98923 1.70068 1.50221 1.06654 1.28265 0.86100 0.78138 0.78204 0.83586 1.20271 1.21558 1.21559 0.91334 0.89237 0.91126 0.88362 0.88435 0.86136 0.86076 0.85669 0.82859 0.75780 0.90926 0.89731 0.94647 0.93386 0.98689 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 8.97 37.16 0.33 -0.22 16 2 C 0.02 0.10 2.76 -93.40 -0.26 -0.16 16 3 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 4 C 0.21 1.52 14.65 -20.76 -0.30 1.22 16 5 N -0.43 -4.41 18.54 42.15 0.78 -3.63 16 6 C -0.11 -0.59 3.73 37.16 0.14 -0.46 16 7 S -0.10 -0.78 19.44 -107.50 -2.09 -2.87 16 8 C -0.14 -1.58 6.12 -38.90 -0.24 -1.82 16 9 C -0.11 -1.16 9.36 -39.39 -0.37 -1.53 16 10 C -0.13 -1.44 10.04 -39.58 -0.40 -1.84 16 11 C -0.10 -1.21 10.04 -39.56 -0.40 -1.61 16 12 C -0.12 -1.86 8.72 -39.42 -0.34 -2.21 16 13 C 0.19 2.77 6.44 -83.43 -0.54 2.23 16 14 N -0.68 -9.85 5.18 -9.71 -0.05 -9.90 16 15 C 0.47 8.82 7.71 -10.99 -0.08 8.74 16 16 O -0.50 -11.32 13.60 5.55 0.08 -11.24 16 17 C 0.14 2.60 6.13 -5.19 -0.03 2.57 16 18 N -0.57 -14.33 2.41 -182.50 -0.44 -14.77 16 19 C 0.17 4.14 8.95 59.84 0.54 4.67 16 20 C -0.25 -6.94 9.67 -15.06 -0.15 -7.09 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C 0.01 0.16 5.24 -17.43 -0.09 0.07 16 23 N -0.91 -26.19 10.43 55.49 0.58 -25.61 16 24 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.32 7.13 -51.93 -0.37 -0.05 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.49 7.75 -51.93 -0.40 0.08 16 32 H 0.10 0.53 7.75 -51.92 -0.40 0.13 16 33 H 0.12 0.94 5.88 -52.49 -0.31 0.63 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.15 2.80 5.79 -52.49 -0.30 2.49 16 37 H 0.41 4.67 7.64 -40.82 -0.31 4.36 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 40 H 0.04 0.92 7.35 -51.93 -0.38 0.54 16 41 H 0.05 1.33 7.25 -51.93 -0.38 0.95 16 42 H -0.01 -0.12 8.03 -51.93 -0.42 -0.54 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -34.09 376.37 -8.46 -42.55 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.77 Total: 0.32 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.19 Total: 2.59 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.87 Total: -53.91 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.09 Total: -2.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.09 -8.46 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.805 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds