Wall clock time and date at job start Tue Mar 31 2020 18:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47082 * 2 1 4 4 C 1.47198 * 109.46947 * 239.99718 * 2 1 3 5 5 N 2.60799 * 109.46826 * 239.99631 * 2 1 3 6 6 C 1.53007 * 109.46663 * 119.99895 * 2 1 3 7 7 S 1.81394 * 109.47083 * 294.99678 * 6 2 1 8 8 C 1.76204 * 103.00086 * 180.02562 * 7 6 2 9 9 C 1.38789 * 120.09990 * 359.97438 * 8 7 6 10 10 C 1.38200 * 119.98386 * 180.02562 * 9 8 7 11 11 C 1.38291 * 120.20464 * 0.02562 * 10 9 8 12 12 C 1.38256 * 120.20938 * 359.97438 * 11 10 9 13 13 C 1.38651 * 120.00660 * 359.67618 * 12 11 10 14 14 N 1.40144 * 120.10265 * 180.32152 * 13 12 11 15 15 C 1.34771 * 119.99686 * 24.80222 * 14 13 12 16 16 O 1.21294 * 120.00267 * 5.57463 * 15 14 13 17 17 C 1.50703 * 120.00114 * 185.57956 * 15 14 13 18 18 N 1.46497 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.46494 * 120.00249 * 90.00450 * 18 17 15 20 20 C 1.36938 * 119.99543 * 269.99328 * 18 17 15 21 21 H 1.07995 * 120.00470 * 24.97064 * 20 18 17 22 22 C 1.38820 * 119.99774 * 204.95910 * 20 18 17 23 23 N 1.31615 * 119.99886 * 5.22676 * 22 20 18 24 24 Si 1.86801 * 119.99758 * 185.22728 * 22 20 18 25 25 H 1.48502 * 109.47289 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46906 * 120.00048 * 24 22 20 27 27 H 1.48496 * 109.47197 * 240.00178 * 24 22 20 28 28 H 1.08997 * 109.47626 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46903 * 300.00281 * 1 2 3 30 30 H 1.08995 * 109.46864 * 59.99720 * 1 2 3 31 31 H 1.08990 * 109.47118 * 55.00058 * 6 2 1 32 32 H 1.09000 * 109.46778 * 174.99849 * 6 2 1 33 33 H 1.07999 * 120.00492 * 0.02611 * 9 8 7 34 34 H 1.08005 * 119.89410 * 179.97438 * 10 9 8 35 35 H 1.08000 * 119.89775 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.99927 * 180.02562 * 12 11 10 37 37 H 0.96995 * 119.99970 * 204.80335 * 14 13 12 38 38 H 1.08999 * 109.46740 * 299.99873 * 17 15 14 39 39 H 1.09001 * 109.47305 * 59.99757 * 17 15 14 40 40 H 1.08995 * 109.47782 * 95.00441 * 19 18 17 41 41 H 1.09005 * 109.46907 * 215.00589 * 19 18 17 42 42 H 1.09006 * 109.47009 * 334.99792 * 19 18 17 43 43 H 0.97003 * 119.99663 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1294 6 6 2.0400 -0.7213 1.2493 7 16 1.5601 0.2156 2.7266 8 6 2.2233 -0.7512 4.0420 9 6 2.9152 -1.9220 3.7649 10 6 3.4339 -2.6787 4.7985 11 6 3.2656 -2.2735 6.1099 12 6 2.5778 -1.1086 6.3953 13 6 2.0600 -0.3390 5.3648 14 7 1.3682 0.8457 5.6514 15 6 1.6097 1.5055 6.8015 16 8 2.4955 1.1314 7.5409 17 6 0.7791 2.7081 7.1690 18 7 1.2356 3.2426 8.4543 19 6 2.2861 4.2629 8.4918 20 6 0.6800 2.7885 9.6207 21 1 0.2317 1.8068 9.6591 22 6 0.6935 3.5902 10.7540 23 7 1.1464 4.8238 10.6820 24 14 0.0686 2.9179 12.3810 25 1 -0.3824 1.5151 12.1965 26 1 1.1616 2.9579 13.3855 27 1 -1.0694 3.7460 12.8544 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 3.0482 -2.2416 2.7419 34 1 3.9717 -3.5898 4.5813 35 1 3.6727 -2.8689 6.9138 36 1 2.4486 -0.7951 7.4207 37 1 0.7158 1.1907 5.0221 38 1 0.8861 3.4725 6.3994 39 1 -0.2681 2.4160 7.2478 40 1 1.8306 5.2520 8.5379 41 1 2.9106 4.1091 9.3719 42 1 2.8990 4.1865 7.5936 43 1 1.1555 5.3841 11.4739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108362467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:16 Heat of formation + Delta-G solvation = 28.257426 kcal Electronic energy + Delta-G solvation = -25046.894786 eV Core-core repulsion = 21411.730735 eV Total energy + Delta-G solvation = -3635.164051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41493 -39.38472 -38.45901 -37.11171 -35.73519 -35.31623 -33.34905 -32.12976 -30.94953 -28.62830 -28.39054 -27.85894 -24.81451 -24.19477 -23.95737 -22.80583 -21.21575 -19.28808 -18.81014 -18.55723 -17.96855 -17.79137 -16.87814 -16.45758 -16.40014 -16.13175 -15.69542 -15.47129 -15.15721 -14.96071 -14.87526 -14.82818 -14.52890 -14.37923 -13.92007 -13.79609 -13.70056 -13.42584 -13.12557 -12.94013 -12.80740 -12.70325 -12.60433 -12.30822 -12.28298 -12.27177 -12.04940 -12.02612 -11.88467 -11.49916 -11.11790 -10.88127 -10.65133 -10.51370 -9.24713 -8.81035 -8.17345 -7.84714 -5.36032 0.20110 0.35824 0.38178 1.36590 1.44937 1.47218 1.57160 1.73001 1.74469 1.79627 2.13376 2.51338 2.80753 2.96395 3.31322 3.62617 3.67073 3.80561 3.85754 3.99737 4.19121 4.21852 4.40262 4.49177 4.51393 4.58839 4.59372 4.63249 4.69076 4.82488 4.90425 4.96722 5.05566 5.18653 5.30494 5.36204 5.39783 5.52606 5.60846 5.62296 5.71379 6.02875 6.28278 6.50841 6.53726 7.11985 7.31707 7.80292 8.22908 9.18767 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002519 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.329458 B =11111.329679 C =12087.420218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.031 3.969 3 H 0.145 0.855 4 C 0.243 3.757 5 N -0.484 5.484 6 C -0.106 4.106 7 S -0.082 6.082 8 C -0.135 4.135 9 C -0.110 4.110 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.148 4.148 13 C 0.159 3.841 14 N -0.662 5.662 15 C 0.481 3.519 16 O -0.547 6.547 17 C 0.133 3.867 18 N -0.596 5.596 19 C 0.182 3.818 20 C -0.257 4.257 21 H 0.062 0.938 22 C -0.050 4.050 23 N -0.936 5.936 24 Si 0.971 3.029 25 H -0.270 1.270 26 H -0.294 1.294 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.421 0.579 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.020 0.980 41 H 0.010 0.990 42 H 0.019 0.981 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -11.958 -22.470 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 H 0.163 0.837 4 C -0.076 4.076 5 N -0.161 5.161 6 C -0.256 4.256 7 S 0.161 5.839 8 C -0.250 4.250 9 C -0.134 4.134 10 C -0.145 4.145 11 C -0.129 4.129 12 C -0.170 4.170 13 C 0.058 3.942 14 N -0.309 5.309 15 C 0.267 3.733 16 O -0.423 6.423 17 C 0.002 3.998 18 N -0.316 5.316 19 C 0.038 3.962 20 C -0.387 4.387 21 H 0.080 0.920 22 C -0.245 4.245 23 N -0.582 5.582 24 Si 0.799 3.201 25 H -0.195 1.195 26 H -0.221 1.221 27 H -0.209 1.209 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.260 0.740 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.975 -11.726 -23.186 26.001 hybrid contribution 0.430 -1.048 1.510 1.888 sum -0.545 -12.774 -21.676 25.166 Atomic orbital electron populations 1.21976 0.89980 1.04248 1.04798 1.18654 0.98411 0.99589 0.82475 0.83702 1.29311 0.91854 0.92443 0.94029 1.81307 1.10613 1.10976 1.13163 1.23745 1.05992 1.02935 0.92912 1.85079 1.70100 1.33037 0.95676 1.21571 1.06940 1.01729 0.94715 1.21292 0.97894 0.93340 1.00874 1.21323 1.00591 1.00948 0.91632 1.21316 0.98000 0.95369 0.98228 1.21366 1.01079 0.95448 0.99100 1.17563 0.97104 0.87456 0.92052 1.43858 1.42021 1.22843 1.22219 1.23542 0.84308 0.85977 0.79435 1.90608 1.32822 1.67585 1.51242 1.20974 0.97150 0.92459 0.89230 1.43767 1.41461 1.45044 1.01330 1.20562 0.88945 0.91114 0.95609 1.19391 1.32261 0.97739 0.89354 0.92007 1.25823 1.00918 0.95720 1.02015 1.70210 1.51666 1.07623 1.28704 0.85155 0.77380 0.77932 0.79655 1.19507 1.22148 1.20916 0.91225 0.88912 0.90417 0.87161 0.87662 0.82819 0.82886 0.84644 0.86720 0.74007 0.87605 0.88106 0.96135 0.97140 0.96292 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.97 71.98 0.65 0.08 16 2 C 0.03 0.15 2.76 -12.60 -0.03 0.12 16 3 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 4 C 0.24 2.80 14.65 89.44 1.31 4.11 16 5 N -0.48 -9.20 18.54 20.01 0.37 -8.82 16 6 C -0.11 -0.71 3.73 71.98 0.27 -0.44 16 7 S -0.08 -1.06 19.44 -56.49 -1.10 -2.15 16 8 C -0.13 -2.79 6.12 22.71 0.14 -2.65 16 9 C -0.11 -1.89 9.36 22.39 0.21 -1.68 16 10 C -0.12 -2.31 10.04 22.27 0.22 -2.08 16 11 C -0.11 -2.66 10.04 22.29 0.22 -2.44 16 12 C -0.15 -4.71 8.72 22.37 0.20 -4.51 16 13 C 0.16 4.51 6.44 38.22 0.25 4.75 16 14 N -0.66 -18.67 5.18 -303.01 -1.57 -20.23 16 15 C 0.48 18.01 7.71 87.66 0.68 18.68 16 16 O -0.55 -25.88 13.60 -3.07 -0.04 -25.93 16 17 C 0.13 4.99 6.13 85.63 0.52 5.51 16 18 N -0.60 -30.18 2.41 -731.32 -1.76 -31.94 16 19 C 0.18 9.36 8.95 127.77 1.14 10.51 16 20 C -0.26 -14.41 9.67 84.04 0.81 -13.60 16 21 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 22 C -0.05 -2.83 5.24 84.86 0.45 -2.39 16 23 N -0.94 -55.51 10.43 21.65 0.23 -55.28 16 24 Si 0.97 46.00 29.56 68.60 2.03 48.02 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 28 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.09 0.34 7.13 -2.39 -0.02 0.32 16 30 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.11 0.57 7.75 -2.40 -0.02 0.55 16 32 H 0.10 0.65 7.75 -2.39 -0.02 0.63 16 33 H 0.15 1.59 5.88 -2.91 -0.02 1.57 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.11 4.53 5.79 -2.91 -0.02 4.52 16 37 H 0.42 8.91 7.64 -92.71 -0.71 8.20 16 38 H 0.11 3.24 8.07 -2.39 -0.02 3.22 16 39 H 0.10 3.43 8.04 -2.39 -0.02 3.41 16 40 H 0.02 1.09 7.35 -2.39 -0.02 1.08 16 41 H 0.01 0.57 7.25 -2.38 -0.02 0.55 16 42 H 0.02 0.85 8.03 -2.38 -0.02 0.83 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -77.98 376.37 5.51 -72.46 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.33 Total: 9.90 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 7.03 Total: 13.98 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -2.74 Total: -116.28 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -1.10 Total: -2.15 kcal Total: -77.98 5.51 -72.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.721 kcal (2) G-P(sol) polarization free energy of solvation -77.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds