Wall clock time and date at job start Tue Mar 31 2020 18:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47555 * 2 1 4 4 C 1.47207 * 109.47153 * 120.00143 * 2 1 3 5 5 N 2.60799 * 109.47091 * 119.99933 * 2 1 3 6 6 C 1.53005 * 109.47468 * 239.99663 * 2 1 3 7 7 S 1.81401 * 109.46577 * 64.99912 * 6 2 1 8 8 C 1.76209 * 102.99850 * 180.02562 * 7 6 2 9 9 C 1.38779 * 120.10236 * 0.02562 * 8 7 6 10 10 C 1.38200 * 119.99093 * 180.27342 * 9 8 7 11 11 C 1.38304 * 120.19387 * 359.49481 * 10 9 8 12 12 C 1.38247 * 120.21087 * 0.50577 * 11 10 9 13 13 C 1.38652 * 120.00694 * 359.74977 * 12 11 10 14 14 N 1.40148 * 120.09791 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00040 * 22.30763 * 14 13 12 16 16 O 1.21302 * 119.99795 * 4.71398 * 15 14 13 17 17 C 1.50691 * 120.00006 * 184.71025 * 15 14 13 18 18 N 1.46504 * 109.47391 * 180.02562 * 17 15 14 19 19 C 1.46498 * 120.00127 * 89.99332 * 18 17 15 20 20 C 1.36941 * 119.99626 * 270.00554 * 18 17 15 21 21 H 1.07997 * 120.00325 * 138.38770 * 20 18 17 22 22 C 1.38813 * 119.99628 * 318.38281 * 20 18 17 23 23 N 1.31624 * 119.99997 * 161.55874 * 22 20 18 24 24 Si 1.86796 * 120.00280 * 341.55532 * 22 20 18 25 25 H 1.48504 * 109.47026 * 95.30781 * 24 22 20 26 26 H 1.48499 * 109.47336 * 215.30507 * 24 22 20 27 27 H 1.48499 * 109.47294 * 335.30749 * 24 22 20 28 28 H 1.08996 * 109.47250 * 60.00475 * 1 2 3 29 29 H 1.09008 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47588 * 299.99852 * 1 2 3 31 31 H 1.08995 * 109.46885 * 305.00184 * 6 2 1 32 32 H 1.08999 * 109.47111 * 184.99898 * 6 2 1 33 33 H 1.08011 * 120.00740 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.90354 * 179.74733 * 10 9 8 35 35 H 1.08000 * 119.89189 * 180.25624 * 11 10 9 36 36 H 1.07992 * 119.99911 * 179.76601 * 12 11 10 37 37 H 0.96995 * 119.99717 * 202.30804 * 14 13 12 38 38 H 1.09003 * 109.47178 * 299.99988 * 17 15 14 39 39 H 1.08995 * 109.47184 * 60.00233 * 17 15 14 40 40 H 1.09009 * 109.46467 * 95.03303 * 19 18 17 41 41 H 1.09002 * 109.47360 * 215.02768 * 19 18 17 42 42 H 1.08998 * 109.47419 * 335.03352 * 19 18 17 43 43 H 0.96995 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3992 -1.2294 2.1294 6 6 2.0400 -0.7213 -1.2492 7 16 1.5601 0.2155 -2.7266 8 6 2.2222 -0.7521 -4.0419 9 6 2.9135 -1.9232 -3.7649 10 6 3.4367 -2.6773 -4.7981 11 6 3.2648 -2.2742 -6.1098 12 6 2.5776 -1.1091 -6.3952 13 6 2.0536 -0.3431 -5.3650 14 7 1.3562 0.8381 -5.6521 15 6 0.8024 1.0151 -6.8681 16 8 0.8333 0.1189 -7.6849 17 6 0.1447 2.3264 -7.2128 18 7 -0.3762 2.2668 -8.5808 19 6 -1.7426 1.7979 -8.8244 20 6 0.4142 2.6491 -9.6317 21 1 0.4151 2.0721 -10.5446 22 6 1.2141 3.7784 -9.5235 23 7 2.2233 3.9517 -10.3505 24 14 0.8583 5.0522 -8.2044 25 1 1.7038 4.7814 -7.0139 26 1 1.1628 6.4073 -8.7298 27 1 -0.5744 4.9805 -7.8206 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 3.0467 -2.2426 -2.7418 34 1 3.9779 -3.5863 -4.5807 35 1 3.6722 -2.8695 -6.9136 36 1 2.4487 -0.7956 -7.4205 37 1 1.2721 1.5282 -4.9758 38 1 -0.6754 2.5148 -6.5200 39 1 0.8763 3.1308 -7.1371 40 1 -2.4152 2.6537 -8.8838 41 1 -1.7750 1.2447 -9.7631 42 1 -2.0544 1.1467 -8.0079 43 1 2.7820 4.7410 -10.2752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108362469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:21 Heat of formation + Delta-G solvation = 51.979845 kcal Electronic energy + Delta-G solvation = -25408.019165 eV Core-core repulsion = 21773.883796 eV Total energy + Delta-G solvation = -3634.135369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.19374 -38.21637 -37.90781 -35.51496 -34.90095 -34.31810 -31.69750 -31.16727 -29.94289 -28.00478 -27.53996 -26.00341 -24.20070 -23.09488 -22.65091 -21.28088 -20.06764 -18.44207 -18.03545 -17.21974 -16.84377 -16.40963 -15.89849 -15.48449 -15.45231 -14.91798 -14.72983 -14.35271 -14.06903 -13.94295 -13.71089 -13.61904 -13.48341 -13.23249 -12.98422 -12.87456 -12.80910 -12.51550 -12.32167 -12.05283 -11.90018 -11.87217 -11.67755 -11.42461 -11.29210 -10.86148 -10.59408 -10.51666 -10.33667 -10.23538 -9.73522 -9.73025 -9.17836 -8.62608 -8.19487 -7.36941 -6.88993 -6.06684 -3.55612 1.04485 1.19570 1.41098 2.07829 2.28269 2.29222 3.12304 3.15859 3.33030 3.37282 3.40957 3.45302 3.85017 4.04696 4.18603 4.39655 4.54713 4.75930 4.87634 4.92134 4.99285 5.03507 5.17402 5.23960 5.28378 5.35715 5.41437 5.54720 5.60785 5.66415 5.82215 5.92278 6.01808 6.22644 6.24722 6.31317 6.54966 6.61449 6.68035 6.72010 7.04139 7.12857 7.66518 7.97166 8.35342 8.62981 8.88131 9.58516 9.97710 11.08231 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.003126 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.609269 B = 8955.853859 C = 9972.488937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.024 3.976 3 H 0.126 0.874 4 C 0.213 3.787 5 N -0.426 5.426 6 C -0.108 4.108 7 S -0.100 6.100 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.135 4.135 11 C -0.096 4.096 12 C -0.123 4.123 13 C 0.191 3.809 14 N -0.680 5.680 15 C 0.485 3.515 16 O -0.493 6.493 17 C 0.119 3.881 18 N -0.584 5.584 19 C 0.129 3.871 20 C -0.265 4.265 21 H 0.080 0.920 22 C 0.035 3.965 23 N -0.895 5.895 24 Si 0.874 3.126 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.264 1.264 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.161 0.839 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.016 0.984 41 H 0.044 0.956 42 H 0.031 0.969 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -8.034 19.469 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.001 3.999 3 H 0.143 0.857 4 C -0.107 4.107 5 N -0.102 5.102 6 C -0.257 4.257 7 S 0.142 5.858 8 C -0.251 4.251 9 C -0.135 4.135 10 C -0.156 4.156 11 C -0.116 4.116 12 C -0.144 4.144 13 C 0.089 3.911 14 N -0.326 5.326 15 C 0.271 3.729 16 O -0.365 6.365 17 C -0.012 4.012 18 N -0.305 5.305 19 C -0.015 4.015 20 C -0.394 4.394 21 H 0.098 0.902 22 C -0.166 4.166 23 N -0.535 5.535 24 Si 0.703 3.297 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.188 1.188 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.178 0.822 37 H 0.242 0.758 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.656 -8.220 20.108 21.786 hybrid contribution 0.789 -0.027 0.763 1.098 sum -0.867 -8.247 20.871 22.458 Atomic orbital electron populations 1.21947 0.90804 1.03983 1.04250 1.18533 0.97957 0.99130 0.84267 0.85653 1.28949 0.93465 0.93845 0.94413 1.81259 1.08631 1.09008 1.11282 1.23642 1.05259 1.02706 0.94114 1.85079 1.71150 1.33557 0.95993 1.21261 1.08632 1.00469 0.94768 1.20821 0.99414 0.93991 0.99302 1.20937 1.01760 1.00246 0.92640 1.21172 0.97714 0.96285 0.96472 1.21725 0.96746 0.95082 1.00892 1.17502 0.93816 0.88754 0.91055 1.44359 1.53775 1.17710 1.16782 1.23500 0.77455 0.92372 0.79543 1.90553 1.55582 1.42848 1.47473 1.21484 0.97924 0.92184 0.89625 1.43707 1.10324 1.75340 1.01165 1.21098 0.84905 0.96311 0.99227 1.18799 1.19848 1.06006 0.94775 0.90228 1.25597 0.96694 0.97216 0.97130 1.69844 1.15921 1.28539 1.39231 0.86945 0.79239 0.82082 0.81415 1.21173 1.22264 1.18826 0.89242 0.91319 0.91147 0.88309 0.88435 0.86149 0.86071 0.85595 0.82196 0.75848 0.90675 0.89792 0.96556 0.93773 0.95033 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 8.97 37.15 0.33 -0.31 16 2 C 0.02 0.11 2.76 -93.41 -0.26 -0.14 16 3 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 4 C 0.21 1.59 14.65 -20.76 -0.30 1.29 16 5 N -0.43 -4.52 18.54 42.15 0.78 -3.74 16 6 C -0.11 -0.64 3.73 37.16 0.14 -0.50 16 7 S -0.10 -0.89 19.41 -107.50 -2.09 -2.98 16 8 C -0.14 -1.69 6.12 -38.91 -0.24 -1.93 16 9 C -0.11 -1.22 9.36 -39.40 -0.37 -1.59 16 10 C -0.14 -1.53 10.04 -39.57 -0.40 -1.92 16 11 C -0.10 -1.27 10.04 -39.55 -0.40 -1.67 16 12 C -0.12 -2.02 8.76 -39.43 -0.35 -2.37 16 13 C 0.19 2.97 6.48 -83.43 -0.54 2.42 16 14 N -0.68 -10.89 5.21 -9.71 -0.05 -10.94 16 15 C 0.48 9.59 7.74 -10.99 -0.09 9.51 16 16 O -0.49 -11.34 13.44 5.54 0.07 -11.26 16 17 C 0.12 2.41 4.92 -5.20 -0.03 2.38 16 18 N -0.58 -13.78 1.91 -182.50 -0.35 -14.13 16 19 C 0.13 2.58 10.69 59.85 0.64 3.22 16 20 C -0.27 -7.39 9.93 -15.06 -0.15 -7.54 16 21 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 22 C 0.03 0.98 5.34 -17.43 -0.09 0.88 16 23 N -0.90 -26.84 13.97 55.49 0.78 -26.07 16 24 Si 0.87 20.64 24.96 -169.99 -4.24 16.40 16 25 H -0.28 -6.30 6.73 56.52 0.38 -5.92 16 26 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 28 H 0.09 0.40 7.13 -51.93 -0.37 0.03 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.56 7.75 -51.93 -0.40 0.15 16 32 H 0.10 0.55 7.75 -51.92 -0.40 0.15 16 33 H 0.12 0.99 5.88 -52.48 -0.31 0.69 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.16 3.14 5.58 -52.49 -0.29 2.85 16 37 H 0.41 5.41 7.58 -40.82 -0.31 5.10 16 38 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.08 1.80 3.52 -51.93 -0.18 1.62 16 40 H 0.02 0.31 8.14 -51.92 -0.42 -0.12 16 41 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.03 0.55 8.03 -51.93 -0.42 0.13 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -33.96 372.33 -7.22 -41.17 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.64 Total: 4.20 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.09 Total: 1.73 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 1.16 Total: -54.87 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.24 Total: 16.40 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.09 Total: -2.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.96 -7.22 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.154 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds