Wall clock time and date at job start Tue Mar 31 2020 18:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47555 * 2 1 4 4 C 1.47207 * 109.47153 * 120.00143 * 2 1 3 5 5 N 2.60799 * 109.47091 * 119.99933 * 2 1 3 6 6 C 1.53005 * 109.47468 * 239.99663 * 2 1 3 7 7 S 1.81401 * 109.46577 * 64.99912 * 6 2 1 8 8 C 1.76209 * 102.99850 * 180.02562 * 7 6 2 9 9 C 1.38779 * 120.10236 * 0.02562 * 8 7 6 10 10 C 1.38200 * 119.99093 * 180.27342 * 9 8 7 11 11 C 1.38304 * 120.19387 * 359.49481 * 10 9 8 12 12 C 1.38247 * 120.21087 * 0.50577 * 11 10 9 13 13 C 1.38652 * 120.00694 * 359.74977 * 12 11 10 14 14 N 1.40148 * 120.09791 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00040 * 22.30763 * 14 13 12 16 16 O 1.21302 * 119.99795 * 4.71398 * 15 14 13 17 17 C 1.50691 * 120.00006 * 184.71025 * 15 14 13 18 18 N 1.46504 * 109.47391 * 180.02562 * 17 15 14 19 19 C 1.46498 * 120.00127 * 89.99332 * 18 17 15 20 20 C 1.36941 * 119.99626 * 270.00554 * 18 17 15 21 21 H 1.07997 * 120.00325 * 138.38770 * 20 18 17 22 22 C 1.38813 * 119.99628 * 318.38281 * 20 18 17 23 23 N 1.31624 * 119.99997 * 161.55874 * 22 20 18 24 24 Si 1.86796 * 120.00280 * 341.55532 * 22 20 18 25 25 H 1.48504 * 109.47026 * 95.30781 * 24 22 20 26 26 H 1.48499 * 109.47336 * 215.30507 * 24 22 20 27 27 H 1.48499 * 109.47294 * 335.30749 * 24 22 20 28 28 H 1.08996 * 109.47250 * 60.00475 * 1 2 3 29 29 H 1.09008 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47588 * 299.99852 * 1 2 3 31 31 H 1.08995 * 109.46885 * 305.00184 * 6 2 1 32 32 H 1.08999 * 109.47111 * 184.99898 * 6 2 1 33 33 H 1.08011 * 120.00740 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.90354 * 179.74733 * 10 9 8 35 35 H 1.08000 * 119.89189 * 180.25624 * 11 10 9 36 36 H 1.07992 * 119.99911 * 179.76601 * 12 11 10 37 37 H 0.96995 * 119.99717 * 202.30804 * 14 13 12 38 38 H 1.09003 * 109.47178 * 299.99988 * 17 15 14 39 39 H 1.08995 * 109.47184 * 60.00233 * 17 15 14 40 40 H 1.09009 * 109.46467 * 95.03303 * 19 18 17 41 41 H 1.09002 * 109.47360 * 215.02768 * 19 18 17 42 42 H 1.08998 * 109.47419 * 335.03352 * 19 18 17 43 43 H 0.96995 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3992 -1.2294 2.1294 6 6 2.0400 -0.7213 -1.2492 7 16 1.5601 0.2155 -2.7266 8 6 2.2222 -0.7521 -4.0419 9 6 2.9135 -1.9232 -3.7649 10 6 3.4367 -2.6773 -4.7981 11 6 3.2648 -2.2742 -6.1098 12 6 2.5776 -1.1091 -6.3952 13 6 2.0536 -0.3431 -5.3650 14 7 1.3562 0.8381 -5.6521 15 6 0.8024 1.0151 -6.8681 16 8 0.8333 0.1189 -7.6849 17 6 0.1447 2.3264 -7.2128 18 7 -0.3762 2.2668 -8.5808 19 6 -1.7426 1.7979 -8.8244 20 6 0.4142 2.6491 -9.6317 21 1 0.4151 2.0721 -10.5446 22 6 1.2141 3.7784 -9.5235 23 7 2.2233 3.9517 -10.3505 24 14 0.8583 5.0522 -8.2044 25 1 1.7038 4.7814 -7.0139 26 1 1.1628 6.4073 -8.7298 27 1 -0.5744 4.9805 -7.8206 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 3.0467 -2.2426 -2.7418 34 1 3.9779 -3.5863 -4.5807 35 1 3.6722 -2.8695 -6.9136 36 1 2.4487 -0.7956 -7.4205 37 1 1.2721 1.5282 -4.9758 38 1 -0.6754 2.5148 -6.5200 39 1 0.8763 3.1308 -7.1371 40 1 -2.4152 2.6537 -8.8838 41 1 -1.7750 1.2447 -9.7631 42 1 -2.0544 1.1467 -8.0079 43 1 2.7820 4.7410 -10.2752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108362469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:20 Heat of formation + Delta-G solvation = 30.480589 kcal Electronic energy + Delta-G solvation = -25408.951443 eV Core-core repulsion = 21773.883796 eV Total energy + Delta-G solvation = -3635.067647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50259 -39.45464 -38.46928 -37.24020 -35.79115 -35.33564 -33.78010 -32.15095 -31.20313 -29.00266 -28.42656 -27.92861 -24.80707 -24.15070 -23.88040 -22.86819 -21.50912 -19.55765 -18.85609 -18.52498 -18.15027 -17.79269 -17.22739 -16.53068 -16.29080 -16.18790 -15.80662 -15.43381 -15.21350 -15.12560 -14.92023 -14.73398 -14.59392 -14.46970 -14.32843 -13.91541 -13.80500 -13.65621 -13.43641 -13.16501 -12.94413 -12.73273 -12.62789 -12.37153 -12.33137 -12.26204 -12.10193 -12.05172 -11.68753 -11.55714 -11.15058 -10.84776 -10.67705 -10.54737 -9.27679 -8.78853 -8.20808 -8.19752 -5.70693 0.17538 0.33175 0.36112 1.29744 1.34231 1.45188 1.56882 1.72232 1.73810 1.74076 2.06267 2.41266 2.78152 2.95280 3.04190 3.35848 3.61284 3.79411 3.81056 3.91481 4.16155 4.20535 4.32506 4.37843 4.38039 4.48497 4.50169 4.55920 4.61508 4.66349 4.88252 4.94880 5.03060 5.03769 5.11407 5.16219 5.28551 5.38032 5.49296 5.60457 5.89473 6.00760 6.16748 6.42965 6.50169 6.89238 7.23530 7.53276 7.94174 8.98733 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.003126 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.609269 B = 8955.853859 C = 9972.488937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 H 0.147 0.853 4 C 0.243 3.757 5 N -0.483 5.483 6 C -0.105 4.105 7 S -0.085 6.085 8 C -0.134 4.134 9 C -0.108 4.108 10 C -0.123 4.123 11 C -0.107 4.107 12 C -0.153 4.153 13 C 0.158 3.842 14 N -0.665 5.665 15 C 0.485 3.515 16 O -0.538 6.538 17 C 0.114 3.886 18 N -0.600 5.600 19 C 0.128 3.872 20 C -0.266 4.266 21 H 0.022 0.978 22 C -0.027 4.027 23 N -0.951 5.951 24 Si 0.950 3.050 25 H -0.257 1.257 26 H -0.304 1.304 27 H -0.238 1.238 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.116 0.884 37 H 0.419 0.581 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.026 0.974 42 H 0.058 0.942 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 -7.854 24.168 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 H 0.165 0.835 4 C -0.076 4.076 5 N -0.160 5.160 6 C -0.255 4.255 7 S 0.158 5.842 8 C -0.249 4.249 9 C -0.132 4.132 10 C -0.143 4.143 11 C -0.128 4.128 12 C -0.175 4.175 13 C 0.057 3.943 14 N -0.312 5.312 15 C 0.271 3.729 16 O -0.413 6.413 17 C -0.016 4.016 18 N -0.322 5.322 19 C -0.016 4.016 20 C -0.396 4.396 21 H 0.040 0.960 22 C -0.223 4.223 23 N -0.594 5.594 24 Si 0.775 3.225 25 H -0.183 1.183 26 H -0.232 1.232 27 H -0.161 1.161 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.153 0.847 36 H 0.134 0.866 37 H 0.258 0.742 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.395 -8.059 24.882 26.264 hybrid contribution 1.047 -0.259 -0.638 1.253 sum -1.348 -8.318 24.243 25.666 Atomic orbital electron populations 1.21973 0.90157 1.04174 1.04740 1.18648 0.98280 0.99674 0.82465 0.83507 1.29286 0.91869 0.92453 0.94016 1.81304 1.10598 1.10924 1.13144 1.23750 1.06134 1.02842 0.92750 1.85056 1.70386 1.33077 0.95729 1.21535 1.07544 1.01097 0.94704 1.21299 0.97936 0.93019 1.00945 1.21339 1.00538 1.00988 0.91476 1.21327 0.97713 0.95491 0.98293 1.21494 0.99373 0.97259 0.99409 1.17586 0.95452 0.88875 0.92412 1.43905 1.53001 1.18524 1.15771 1.23188 0.77565 0.91818 0.80296 1.90568 1.57419 1.44231 1.49126 1.21606 0.99408 0.91930 0.88648 1.43773 1.11197 1.75816 1.01424 1.21180 0.83622 0.97246 0.99517 1.18531 1.20537 1.05732 0.94781 0.96011 1.26399 0.95923 0.99368 1.00645 1.70019 1.17514 1.29356 1.42532 0.85736 0.80736 0.77353 0.78669 1.18338 1.23167 1.16113 0.89086 0.91368 0.90321 0.87320 0.87339 0.82587 0.82684 0.84679 0.86623 0.74219 0.85771 0.90672 0.94644 0.95556 0.92306 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.97 71.98 0.65 -0.05 16 2 C 0.03 0.17 2.76 -12.60 -0.03 0.13 16 3 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 4 C 0.24 2.84 14.65 89.45 1.31 4.15 16 5 N -0.48 -9.23 18.54 20.01 0.37 -8.86 16 6 C -0.11 -0.76 3.73 71.98 0.27 -0.49 16 7 S -0.09 -1.19 19.41 -56.49 -1.10 -2.28 16 8 C -0.13 -2.96 6.12 22.71 0.14 -2.82 16 9 C -0.11 -1.96 9.36 22.39 0.21 -1.75 16 10 C -0.12 -2.42 10.04 22.28 0.22 -2.20 16 11 C -0.11 -2.84 10.04 22.29 0.22 -2.62 16 12 C -0.15 -5.29 8.76 22.37 0.20 -5.09 16 13 C 0.16 4.82 6.48 38.22 0.25 5.07 16 14 N -0.67 -20.71 5.21 -303.00 -1.58 -22.29 16 15 C 0.48 19.28 7.74 87.65 0.68 19.96 16 16 O -0.54 -26.10 13.44 -3.10 -0.04 -26.14 16 17 C 0.11 4.44 4.92 85.63 0.42 4.86 16 18 N -0.60 -28.46 1.91 -731.31 -1.39 -29.85 16 19 C 0.13 5.07 10.69 127.77 1.37 6.44 16 20 C -0.27 -15.56 9.93 84.03 0.83 -14.72 16 21 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 22 C -0.03 -1.57 5.34 84.86 0.45 -1.12 16 23 N -0.95 -59.93 13.97 21.65 0.30 -59.62 16 24 Si 0.95 42.42 24.96 68.60 1.71 44.13 16 25 H -0.26 -10.30 6.73 99.48 0.67 -9.63 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.24 -9.59 7.11 99.48 0.71 -8.88 16 28 H 0.09 0.44 7.13 -2.39 -0.02 0.42 16 29 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.11 0.66 7.75 -2.39 -0.02 0.65 16 32 H 0.11 0.65 7.75 -2.39 -0.02 0.63 16 33 H 0.16 1.70 5.88 -2.90 -0.02 1.69 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.12 5.02 5.58 -2.91 -0.02 5.00 16 37 H 0.42 10.21 7.58 -92.71 -0.70 9.51 16 38 H 0.12 3.59 8.07 -2.39 -0.02 3.57 16 39 H 0.08 3.07 3.52 -2.39 -0.01 3.06 16 40 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 42 H 0.06 1.97 8.03 -2.39 -0.02 1.95 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -81.60 372.33 5.77 -75.83 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.31 Total: 19.33 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 7.18 Total: 9.75 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -2.30 Total: -120.62 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.04 Total: -26.14 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.71 Total: 44.13 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -1.10 Total: -2.28 kcal Total: -81.60 5.77 -75.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108362469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.309 kcal (2) G-P(sol) polarization free energy of solvation -81.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds