Wall clock time and date at job start Tue Mar 31 2020 18:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47342 * 2 1 4 4 O 1.42896 * 109.47060 * 239.99590 * 2 1 3 5 5 C 1.35896 * 117.00307 * 84.96215 * 4 2 1 6 6 C 1.38773 * 120.03962 * 354.55229 * 5 4 2 7 7 C 1.38134 * 119.99410 * 179.97438 * 6 5 4 8 8 C 1.38256 * 120.07715 * 359.97438 * 7 6 5 9 9 C 1.38469 * 120.08827 * 0.02804 * 8 7 6 10 10 F 1.35097 * 119.99848 * 179.97438 * 9 8 7 11 11 C 1.38390 * 120.00600 * 359.69789 * 9 8 7 12 12 C 1.50698 * 109.46743 * 119.99475 * 2 1 3 13 13 O 1.21294 * 120.00176 * 120.00002 * 12 2 1 14 14 N 1.34776 * 120.00423 * 299.99778 * 12 2 1 15 15 C 1.40163 * 120.00268 * 180.02562 * 14 12 2 16 16 C 1.40401 * 125.97244 * 0.02614 * 15 14 12 17 17 C 1.35239 * 107.86852 * 179.75587 * 16 15 14 18 18 N 1.34974 * 107.85757 * 0.38975 * 17 16 15 19 19 C 1.46500 * 125.97424 * 179.87126 * 18 17 16 20 20 C 1.50699 * 109.47273 * 124.71697 * 19 18 17 21 21 H 1.07999 * 119.99362 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00283 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99947 * 359.72184 * 22 20 19 24 24 Si 1.86793 * 120.00274 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47318 * 179.72468 * 24 22 20 26 26 H 1.48510 * 109.46838 * 299.72283 * 24 22 20 27 27 H 1.48504 * 109.47407 * 59.72022 * 24 22 20 28 28 N 1.31221 * 125.97213 * 180.02562 * 15 14 12 29 29 H 1.09001 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47134 * 300.00803 * 1 2 3 31 31 H 1.09000 * 109.47088 * 60.00209 * 1 2 3 32 32 H 1.07998 * 120.00081 * 0.02562 * 6 5 4 33 33 H 1.07993 * 119.95779 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.95405 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.04428 * 180.30028 * 11 9 8 36 36 H 0.97005 * 119.99493 * 0.02562 * 14 12 2 37 37 H 1.08002 * 126.06428 * 0.02562 * 16 15 14 38 38 H 1.07995 * 126.07027 * 180.23932 * 17 16 15 39 39 H 1.08996 * 109.46908 * 4.71446 * 19 18 17 40 40 H 1.09006 * 109.47011 * 244.71813 * 19 18 17 41 41 H 0.96999 * 119.99420 * 0.27764 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1117 0.0622 -2.3043 6 6 1.6584 1.3735 -2.3279 7 6 1.7665 2.1209 -3.4846 8 6 2.3265 1.5641 -4.6194 9 6 2.7799 0.2559 -4.5996 10 9 3.3264 -0.2865 -5.7097 11 6 2.6785 -0.4942 -3.4410 12 6 2.0322 -0.7103 1.2305 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1743 -0.9101 3.5991 16 6 2.9856 -2.0558 3.6166 17 6 3.2206 -2.3782 4.9088 18 7 2.5773 -1.4792 5.6832 19 6 2.5635 -1.4590 7.1480 20 6 3.0373 -0.1143 7.6364 21 1 3.3200 0.6489 6.9265 22 6 3.1099 0.1415 8.9892 23 7 2.7603 -0.7862 9.8535 24 14 3.6965 1.8084 9.5945 25 1 3.6769 1.8310 11.0792 26 1 5.0808 2.0503 9.1140 27 1 2.7985 2.8692 9.0713 28 7 1.9302 -0.5656 4.8415 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2219 1.8100 -1.4417 33 1 1.4139 3.1414 -3.5022 34 1 2.4097 2.1500 -5.5228 35 1 3.0364 -1.5131 -3.4235 36 1 1.1487 0.5388 2.5435 37 1 3.3597 -2.5833 2.7515 38 1 3.8152 -3.2090 5.2588 39 1 3.2248 -2.2374 7.5284 40 1 1.5490 -1.6381 7.5043 41 1 2.4554 -1.6517 9.5392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:11 Heat of formation + Delta-G solvation = -4.682838 kcal Electronic energy + Delta-G solvation = -26799.953225 eV Core-core repulsion = 22597.147601 eV Total energy + Delta-G solvation = -4202.805624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.30440 -41.20652 -40.58968 -39.31314 -37.57297 -35.02957 -33.84387 -32.72354 -31.11648 -30.58356 -30.14139 -29.46427 -26.52505 -25.26095 -23.56399 -23.33302 -22.72963 -21.47172 -20.52691 -19.68544 -19.03634 -17.78286 -17.24414 -16.82603 -16.81807 -16.51201 -16.37438 -16.02855 -15.72273 -15.37791 -15.05611 -14.65417 -14.21330 -14.11812 -13.92185 -13.82214 -13.43087 -13.30378 -12.99161 -12.79895 -12.54490 -12.39641 -12.26479 -12.06385 -11.88041 -11.54471 -11.41083 -11.21561 -10.86318 -10.57617 -10.19662 -10.14894 -9.72775 -9.34294 -9.06256 -8.75836 -8.62517 -8.31010 -7.63126 -6.62481 -4.36866 0.66503 0.82446 1.99144 2.08718 2.73142 2.92954 3.12841 3.34722 3.35983 3.51996 3.54713 3.63042 3.92186 4.13128 4.29509 4.33670 4.37481 4.41349 4.52545 4.56987 4.78791 4.92364 5.09280 5.11520 5.13825 5.36857 5.48574 5.58061 5.60917 5.63992 5.75800 5.84402 6.04324 6.21038 6.31879 6.39985 6.51894 6.68708 6.83307 7.18206 7.35987 7.62757 7.75414 7.99653 8.28625 8.44460 8.56286 9.31335 10.75121 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.001967 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.949726 B =14231.267136 C =14732.651416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.107 0.893 4 O -0.278 6.278 5 C 0.164 3.836 6 C -0.224 4.224 7 C -0.049 4.049 8 C -0.194 4.194 9 C 0.140 3.860 10 F -0.134 7.134 11 C -0.187 4.187 12 C 0.523 3.477 13 O -0.491 6.491 14 N -0.624 5.624 15 C 0.258 3.742 16 C -0.285 4.285 17 C 0.053 3.947 18 N -0.315 5.315 19 C 0.249 3.751 20 C -0.609 4.609 21 H 0.063 0.937 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 1.077 2.923 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.298 5.298 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.412 0.588 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 4.587 -26.386 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.013 3.987 3 H 0.124 0.876 4 O -0.190 6.190 5 C 0.117 3.883 6 C -0.242 4.242 7 C -0.067 4.067 8 C -0.213 4.213 9 C 0.120 3.880 10 F -0.112 7.112 11 C -0.206 4.206 12 C 0.306 3.694 13 O -0.362 6.362 14 N -0.274 5.274 15 C 0.005 3.995 16 C -0.316 4.316 17 C -0.097 4.097 18 N -0.097 5.097 19 C 0.131 3.869 20 C -0.647 4.647 21 H 0.082 0.918 22 C -0.182 4.182 23 N -0.539 5.539 24 Si 0.904 3.096 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.211 1.211 28 N -0.129 5.129 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.131 5.329 -24.217 25.138 hybrid contribution -0.130 -1.008 -1.947 2.196 sum -4.261 4.321 -26.164 26.858 Atomic orbital electron populations 1.22406 0.91982 1.05051 1.04311 1.22145 0.96032 0.97055 0.83478 0.87576 1.86211 1.80605 1.36681 1.15508 1.18637 0.93458 0.89945 0.86229 1.21416 1.07883 0.94194 1.00736 1.20797 0.95138 0.99625 0.91110 1.21075 1.05038 0.94306 1.00838 1.17281 0.96234 0.91950 0.82503 1.91526 1.83126 1.86140 1.50436 1.20292 1.06904 1.02679 0.90756 1.19911 0.81087 0.85174 0.83182 1.90703 1.35284 1.24632 1.85621 1.42202 1.51835 1.30847 1.02477 1.19013 0.99421 0.94687 0.86374 1.21540 1.10713 1.02067 0.97291 1.22581 0.99337 0.96775 0.91010 1.48813 1.35198 1.18097 1.07583 1.19790 0.98236 1.00051 0.68864 1.22087 1.49256 0.98454 0.94898 0.91843 1.25933 0.94631 1.05077 0.92562 1.70857 1.40455 1.05556 1.37006 0.83415 0.76370 0.73610 0.76225 1.20497 1.21223 1.21134 1.77350 1.22398 1.15549 0.97641 0.90171 0.89730 0.90202 0.84378 0.84477 0.84533 0.83607 0.75240 0.82117 0.81351 0.93530 0.94684 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.07 37.16 0.34 -0.85 16 2 C 0.07 0.67 2.64 -27.88 -0.07 0.60 16 3 H 0.11 0.70 6.31 -51.93 -0.33 0.37 16 4 O -0.28 -3.13 9.33 -39.32 -0.37 -3.50 16 5 C 0.16 1.55 6.60 -39.22 -0.26 1.29 16 6 C -0.22 -1.57 8.24 -39.42 -0.32 -1.90 16 7 C -0.05 -0.29 10.04 -39.61 -0.40 -0.69 16 8 C -0.19 -1.36 10.02 -39.49 -0.40 -1.75 16 9 C 0.14 1.24 7.30 -39.44 -0.29 0.96 16 10 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 11 C -0.19 -1.80 9.97 -39.37 -0.39 -2.19 16 12 C 0.52 7.09 7.20 -10.99 -0.08 7.01 16 13 O -0.49 -8.60 13.63 -14.36 -0.20 -8.79 16 14 N -0.62 -8.81 5.34 -11.13 -0.06 -8.87 16 15 C 0.26 4.96 8.11 -154.39 -1.25 3.71 16 16 C -0.28 -5.52 9.60 -39.84 -0.38 -5.90 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.18 3.67 -62.56 -0.23 -7.41 16 19 C 0.25 6.16 5.57 -5.19 -0.03 6.14 16 20 C -0.61 -16.81 9.24 -34.44 -0.32 -17.13 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 23 N -0.90 -25.94 13.65 55.43 0.76 -25.19 16 24 Si 1.08 24.50 29.90 -169.99 -5.08 19.41 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 28 N -0.30 -6.66 12.42 31.44 0.39 -6.27 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.42 7.56 -51.93 -0.39 0.03 16 31 H 0.08 0.40 6.91 -51.93 -0.36 0.04 16 32 H 0.14 0.67 5.43 -52.49 -0.28 0.39 16 33 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.41 4.40 8.24 -40.82 -0.34 4.06 16 37 H 0.16 3.04 5.92 -52.49 -0.31 2.73 16 38 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 39 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 40 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 41 H 0.27 7.50 7.22 -40.82 -0.29 7.20 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -34.33 358.75 -7.94 -42.28 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.45 Total: 3.52 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -4.15 Total: -9.34 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.86 Total: -47.74 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.56 Total: -12.29 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.33 -7.94 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.595 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds