Wall clock time and date at job start Tue Mar 31 2020 18:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47342 * 2 1 4 4 O 1.42896 * 109.47060 * 239.99590 * 2 1 3 5 5 C 1.35896 * 117.00307 * 84.96215 * 4 2 1 6 6 C 1.38773 * 120.03962 * 354.55229 * 5 4 2 7 7 C 1.38134 * 119.99410 * 179.97438 * 6 5 4 8 8 C 1.38256 * 120.07715 * 359.97438 * 7 6 5 9 9 C 1.38469 * 120.08827 * 0.02804 * 8 7 6 10 10 F 1.35097 * 119.99848 * 179.97438 * 9 8 7 11 11 C 1.38390 * 120.00600 * 359.69789 * 9 8 7 12 12 C 1.50698 * 109.46743 * 119.99475 * 2 1 3 13 13 O 1.21294 * 120.00176 * 120.00002 * 12 2 1 14 14 N 1.34776 * 120.00423 * 299.99778 * 12 2 1 15 15 C 1.40163 * 120.00268 * 180.02562 * 14 12 2 16 16 C 1.40401 * 125.97244 * 0.02614 * 15 14 12 17 17 C 1.35239 * 107.86852 * 179.75587 * 16 15 14 18 18 N 1.34974 * 107.85757 * 0.38975 * 17 16 15 19 19 C 1.46500 * 125.97424 * 179.87126 * 18 17 16 20 20 C 1.50699 * 109.47273 * 124.71697 * 19 18 17 21 21 H 1.07999 * 119.99362 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00283 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99947 * 359.72184 * 22 20 19 24 24 Si 1.86793 * 120.00274 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47318 * 179.72468 * 24 22 20 26 26 H 1.48510 * 109.46838 * 299.72283 * 24 22 20 27 27 H 1.48504 * 109.47407 * 59.72022 * 24 22 20 28 28 N 1.31221 * 125.97213 * 180.02562 * 15 14 12 29 29 H 1.09001 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47134 * 300.00803 * 1 2 3 31 31 H 1.09000 * 109.47088 * 60.00209 * 1 2 3 32 32 H 1.07998 * 120.00081 * 0.02562 * 6 5 4 33 33 H 1.07993 * 119.95779 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.95405 * 179.97438 * 8 7 6 35 35 H 1.07999 * 120.04428 * 180.30028 * 11 9 8 36 36 H 0.97005 * 119.99493 * 0.02562 * 14 12 2 37 37 H 1.08002 * 126.06428 * 0.02562 * 16 15 14 38 38 H 1.07995 * 126.07027 * 180.23932 * 17 16 15 39 39 H 1.08996 * 109.46908 * 4.71446 * 19 18 17 40 40 H 1.09006 * 109.47011 * 244.71813 * 19 18 17 41 41 H 0.96999 * 119.99420 * 0.27764 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1117 0.0622 -2.3043 6 6 1.6584 1.3735 -2.3279 7 6 1.7665 2.1209 -3.4846 8 6 2.3265 1.5641 -4.6194 9 6 2.7799 0.2559 -4.5996 10 9 3.3264 -0.2865 -5.7097 11 6 2.6785 -0.4942 -3.4410 12 6 2.0322 -0.7103 1.2305 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1743 -0.9101 3.5991 16 6 2.9856 -2.0558 3.6166 17 6 3.2206 -2.3782 4.9088 18 7 2.5773 -1.4792 5.6832 19 6 2.5635 -1.4590 7.1480 20 6 3.0373 -0.1143 7.6364 21 1 3.3200 0.6489 6.9265 22 6 3.1099 0.1415 8.9892 23 7 2.7603 -0.7862 9.8535 24 14 3.6965 1.8084 9.5945 25 1 3.6769 1.8310 11.0792 26 1 5.0808 2.0503 9.1140 27 1 2.7985 2.8692 9.0713 28 7 1.9302 -0.5656 4.8415 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2219 1.8100 -1.4417 33 1 1.4139 3.1414 -3.5022 34 1 2.4097 2.1500 -5.5228 35 1 3.0364 -1.5131 -3.4235 36 1 1.1487 0.5388 2.5435 37 1 3.3597 -2.5833 2.7515 38 1 3.8152 -3.2090 5.2588 39 1 3.2248 -2.2374 7.5284 40 1 1.5490 -1.6381 7.5043 41 1 2.4554 -1.6517 9.5392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117711951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:10 Heat of formation + Delta-G solvation = -25.200133 kcal Electronic energy + Delta-G solvation = -26800.842921 eV Core-core repulsion = 22597.147601 eV Total energy + Delta-G solvation = -4203.695320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.98761 -42.43617 -41.64872 -40.39064 -38.28069 -36.49059 -35.64614 -33.65711 -32.44508 -31.43531 -31.05698 -30.73272 -28.28092 -26.20961 -25.05795 -24.06049 -23.78316 -22.66916 -21.95030 -20.96662 -19.71982 -19.25522 -18.80135 -18.09145 -17.51819 -17.30258 -17.20640 -16.82233 -16.72150 -16.63623 -16.15800 -15.79495 -15.64044 -15.51440 -15.03016 -14.80989 -14.70284 -14.17393 -14.05442 -13.93866 -13.81269 -13.55504 -13.34540 -13.22837 -12.92530 -12.61957 -12.60955 -12.17968 -12.10369 -12.00537 -11.95309 -11.69400 -11.02559 -10.93552 -10.69359 -9.94305 -9.89244 -9.37432 -9.26887 -8.78198 -6.56115 0.08109 0.23960 0.76615 0.97298 1.27889 1.52006 1.58119 1.77776 1.82086 2.07323 2.37642 2.49657 2.56017 3.01224 3.23607 3.33608 3.60087 3.76327 3.78213 3.84373 3.98247 4.06546 4.10294 4.20355 4.39515 4.53805 4.61435 4.64295 4.66677 4.76971 4.78413 4.99058 5.01933 5.05757 5.12396 5.20146 5.32004 5.53959 5.65283 5.75861 5.89449 6.06644 6.23641 6.24936 6.39989 6.81855 6.96180 7.19595 8.58422 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.001967 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.949726 B =14231.267136 C =14732.651416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.141 0.859 4 O -0.307 6.307 5 C 0.145 3.855 6 C -0.217 4.217 7 C -0.041 4.041 8 C -0.190 4.190 9 C 0.121 3.879 10 F -0.144 7.144 11 C -0.209 4.209 12 C 0.522 3.478 13 O -0.535 6.535 14 N -0.613 5.613 15 C 0.269 3.731 16 C -0.294 4.294 17 C 0.057 3.943 18 N -0.341 5.341 19 C 0.259 3.741 20 C -0.621 4.621 21 H 0.047 0.953 22 C -0.020 4.020 23 N -0.923 5.923 24 Si 1.120 2.880 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.337 5.337 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.429 0.571 37 H 0.166 0.834 38 H 0.201 0.799 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 7.235 -27.701 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 H 0.158 0.842 4 O -0.220 6.220 5 C 0.099 3.901 6 C -0.235 4.235 7 C -0.059 4.059 8 C -0.209 4.209 9 C 0.101 3.899 10 F -0.123 7.123 11 C -0.228 4.228 12 C 0.308 3.692 13 O -0.408 6.408 14 N -0.265 5.265 15 C 0.014 3.986 16 C -0.325 4.325 17 C -0.092 4.092 18 N -0.123 5.123 19 C 0.139 3.861 20 C -0.659 4.659 21 H 0.065 0.935 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.941 3.059 25 H -0.202 1.202 26 H -0.197 1.197 27 H -0.198 1.198 28 N -0.168 5.168 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.268 0.732 37 H 0.183 0.817 38 H 0.218 0.782 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.767 7.983 -25.577 27.214 hybrid contribution 0.054 -1.875 -1.715 2.541 sum -4.713 6.108 -27.291 28.361 Atomic orbital electron populations 1.22451 0.89647 1.04741 1.06480 1.22256 0.97463 0.97334 0.80789 0.84197 1.86160 1.81364 1.38121 1.16401 1.18779 0.94717 0.91087 0.85481 1.21745 1.06724 0.92879 1.02166 1.21248 0.93653 1.00974 0.89980 1.21417 1.03870 0.93353 1.02215 1.17511 0.97323 0.92958 0.82062 1.91494 1.83480 1.86481 1.50854 1.20355 1.08073 1.02608 0.91787 1.20869 0.79778 0.84582 0.83936 1.90677 1.37207 1.26724 1.86210 1.42300 1.51778 1.31107 1.01287 1.19354 0.97994 0.94333 0.86932 1.21725 1.11006 1.02427 0.97327 1.23165 0.98458 0.96689 0.90851 1.48592 1.37133 1.19610 1.06989 1.19449 0.97124 0.98989 0.70508 1.22272 1.49342 0.99333 0.94928 0.93485 1.27289 0.94068 1.07668 0.92933 1.70953 1.41786 1.05823 1.37348 0.82876 0.76877 0.70195 0.75975 1.20156 1.19710 1.19819 1.77268 1.24065 1.16756 0.98708 0.91807 0.87660 0.87855 0.81669 0.80807 0.82507 0.84966 0.73151 0.81688 0.78234 0.92897 0.96365 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.07 71.98 0.65 -1.14 16 2 C 0.08 1.30 2.64 29.85 0.08 1.38 16 3 H 0.14 1.29 6.31 -2.39 -0.02 1.27 16 4 O -0.31 -6.67 9.33 -73.34 -0.68 -7.35 16 5 C 0.14 2.57 6.60 22.50 0.15 2.72 16 6 C -0.22 -2.28 8.24 22.37 0.18 -2.09 16 7 C -0.04 -0.33 10.04 22.25 0.22 -0.10 16 8 C -0.19 -2.18 10.02 22.33 0.22 -1.95 16 9 C 0.12 2.09 7.30 22.36 0.16 2.26 16 10 F -0.14 -2.82 17.27 44.97 0.78 -2.05 16 11 C -0.21 -4.09 9.97 22.41 0.22 -3.87 16 12 C 0.52 13.57 7.20 87.66 0.63 14.20 16 13 O -0.53 -18.74 13.63 15.96 0.22 -18.52 16 14 N -0.61 -16.47 5.34 -307.51 -1.64 -18.12 16 15 C 0.27 10.22 8.11 133.32 1.08 11.30 16 16 C -0.29 -11.33 9.60 22.10 0.21 -11.11 16 17 C 0.06 2.20 11.44 83.52 0.96 3.16 16 18 N -0.34 -15.71 3.67 -351.84 -1.29 -17.00 16 19 C 0.26 13.07 5.57 85.63 0.48 13.54 16 20 C -0.62 -34.65 9.24 25.60 0.24 -34.41 16 21 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 22 C -0.02 -1.10 5.46 84.65 0.46 -0.63 16 23 N -0.92 -53.32 13.65 21.45 0.29 -53.03 16 24 Si 1.12 48.70 29.90 68.60 2.05 50.75 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 N -0.34 -15.10 12.42 -54.45 -0.68 -15.78 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.65 7.56 -2.39 -0.02 0.63 16 31 H 0.10 0.61 6.91 -2.39 -0.02 0.60 16 32 H 0.17 0.74 5.43 -2.91 -0.02 0.73 16 33 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.43 8.23 8.24 -92.70 -0.76 7.47 16 37 H 0.17 6.26 5.92 -2.91 -0.02 6.25 16 38 H 0.20 6.15 8.06 -2.91 -0.02 6.13 16 39 H 0.05 2.58 7.94 -2.39 -0.02 2.56 16 40 H 0.02 0.98 8.00 -2.38 -0.02 0.96 16 41 H 0.26 14.89 7.22 -92.71 -0.67 14.22 16 Total: -1.00 -76.99 358.75 5.43 -71.56 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.43 Total: 16.30 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 5.95 Total: -6.76 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -3.32 Total: -103.92 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.47 Total: -25.87 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.05 Total: 50.75 kcal Total: -76.99 5.43 -71.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.360 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds